6HT
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.08Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.43Å | 1.44Å | |
| C4' | C3' | sing | 1.53Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C6' | sing | 1.43Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.53Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.53Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C1' | C6' | sing | 1.53Å | 1.53Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| C6' | H6'1 | sing | 1.09Å | 1.09Å | |
| C6' | H6'2 | sing | 1.09Å | 1.09Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.34Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | H3 | sing | 0.97Å | 1.01Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.41Å | 1.44Å | |
| C5 | C5M | sing | 1.51Å | 1.53Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C5M | H71 | sing | 1.09Å | 1.09Å | |
| C5M | H72 | sing | 1.09Å | 1.09Å | |
| C5M | H73 | sing | 1.09Å | 1.09Å | |
| C6 | H6 | sing | 1.08Å | 1.09Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 120.0° | 109.5° |
| OP1 | P | OP3 | 108.4° | 109.4° |
| OP1 | P | O5' | 108.5° | 109.4° |
| OP2 | P | OP3 | 108.3° | 109.5° |
| OP2 | P | O5' | 108.2° | 109.5° |
| P | OP2 | HOP2 | 120.1° | 106.9° |
| OP3 | P | O5' | 102.1° | 109.5° |
| P | OP3 | HOP3 | 108.3° | 106.8° |
| P | O5' | C5' | 120.5° | 106.9° |
| O5' | C5' | C4' | 112.1° | 109.5° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| O5' | C5' | H5'' | 108.5° | 109.5° |
| C4' | C5' | H5' | 106.9° | 109.5° |
| C4' | C5' | H5'' | 110.0° | 109.4° |
| C5' | C4' | O4' | 109.2° | 109.4° |
| C5' | C4' | C3' | 109.5° | 109.4° |
| C5' | C4' | H4' | 108.8° | 109.4° |
| H5' | C5' | H5'' | 109.8° | 109.5° |
| O4' | C4' | C3' | 111.5° | 109.8° |
| O4' | C4' | H4' | 109.1° | 109.4° |
| C4' | O4' | C6' | 115.9° | 107.6° |
| C3' | C4' | H4' | 108.8° | 109.4° |
| C4' | C3' | O3' | 110.0° | 109.5° |
| C4' | C3' | C2' | 110.7° | 109.1° |
| C4' | C3' | H3' | 108.6° | 109.5° |
| O4' | C6' | C1' | 110.8° | 109.8° |
| O4' | C6' | H6'1 | 109.2° | 109.4° |
| O4' | C6' | H6'2 | 109.4° | 109.5° |
| O3' | C3' | C2' | 110.0° | 109.6° |
| O3' | C3' | H3' | 108.9° | 109.6° |
| C3' | O3' | HO3' | 110.0° | 106.8° |
| C2' | C3' | H3' | 108.7° | 109.5° |
| C3' | C2' | C1' | 111.7° | 108.6° |
| C3' | C2' | H2' | 108.9° | 109.6° |
| C3' | C2' | H2'' | 108.5° | 109.7° |
| C1' | C2' | H2' | 108.9° | 109.6° |
| C1' | C2' | H2'' | 108.7° | 109.7° |
| C2' | C1' | C6' | 107.8° | 109.1° |
| C2' | C1' | N1 | 110.9° | 109.5° |
| C2' | C1' | H1' | 109.0° | 109.6° |
| H2' | C2' | H2'' | 110.1° | 109.7° |
| C6' | C1' | N1 | 111.0° | 109.5° |
| C6' | C1' | H1' | 109.1° | 109.5° |
| C1' | C6' | H6'1 | 109.5° | 109.4° |
| C1' | C6' | H6'2 | 109.4° | 109.4° |
| N1 | C1' | H1' | 109.1° | 109.5° |
| C1' | N1 | C2 | 117.6° | 119.7° |
| C1' | N1 | C6 | 121.4° | 119.7° |
| H6'1 | C6' | H6'2 | 108.4° | 109.4° |
| C2 | N1 | C6 | 121.0° | 120.6° |
| N1 | C2 | O2 | 122.4° | 119.5° |
| N1 | C2 | N3 | 116.1° | 121.0° |
| N1 | C6 | C5 | 121.5° | 119.6° |
| N1 | C6 | H6 | 119.4° | 120.2° |
| O2 | C2 | N3 | 121.6° | 119.5° |
| C2 | N3 | C4 | 126.4° | 120.2° |
| C2 | N3 | H3 | 116.8° | 120.0° |
| C4 | N3 | H3 | 116.7° | 119.8° |
| N3 | C4 | O4 | 120.7° | 120.4° |
| N3 | C4 | C5 | 113.9° | 119.4° |
| O4 | C4 | C5 | 125.4° | 120.2° |
| C4 | C5 | C5M | 119.4° | 120.5° |
| C4 | C5 | C6 | 121.0° | 119.1° |
| C5M | C5 | C6 | 119.6° | 120.4° |
| C5 | C5M | H71 | 109.5° | 109.5° |
| C5 | C5M | H72 | 109.5° | 109.5° |
| C5 | C5M | H73 | 109.5° | 109.5° |
| C5 | C6 | H6 | 119.1° | 120.2° |
| H71 | C5M | H72 | 109.5° | 109.4° |
| H71 | C5M | H73 | 109.4° | 109.5° |
| H72 | C5M | H73 | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 125.0° | 120.0° |
| OP1 | P | OP2 | O5' | 125.1° | 120.0° |
| OP1 | P | OP3 | O5' | 114.3° | 119.9° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 172.6° | 60.0° |
| OP2 | P | OP3 | O5' | 114.0° | 120.1° |
| OP2 | P | OP3 | HOP3 | 48.3° | 60.0° |
| OP2 | P | O5' | C5' | 55.7° | 180.0° |
| OP3 | P | OP2 | HOP2 | 55.0° | 59.9° |
| OP3 | P | O5' | C5' | 58.3° | 60.0° |
| O5' | P | OP2 | HOP2 | 55.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 65.7° | 60.0° |
| P | O5' | C5' | C4' | 158.8° | 180.0° |
| P | O5' | C5' | H5' | 82.7° | 59.9° |
| P | O5' | C5' | H5'' | 37.1° | 60.1° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.9° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| O5' | C5' | C4' | O4' | 60.4° | 60.0° |
| O5' | C5' | C4' | C3' | 61.9° | 179.7° |
| O5' | C5' | C4' | H4' | 179.4° | 59.8° |
| C4' | C5' | H5' | H5'' | 119.3° | 120.0° |
| C5' | C4' | O4' | C3' | 121.1° | 120.1° |
| C5' | C4' | O4' | H4' | 118.8° | 119.8° |
| C5' | C4' | C3' | H4' | 118.8° | 119.8° |
| C5' | C4' | O4' | C6' | 174.0° | 172.3° |
| C5' | C4' | C3' | O3' | 68.2° | 58.7° |
| C5' | C4' | C3' | C2' | 170.2° | 178.7° |
| C5' | C4' | C3' | H3' | 50.9° | 61.5° |
| H5' | C5' | C4' | O4' | 179.6° | 180.0° |
| H5' | C5' | C4' | C3' | 58.1° | 59.7° |
| H5' | C5' | C4' | H4' | 60.7° | 60.2° |
| H5'' | C5' | C4' | O4' | 60.5° | 60.0° |
| H5'' | C5' | C4' | C3' | 177.2° | 60.3° |
| H5'' | C5' | C4' | H4' | 58.5° | 179.8° |
| O4' | C4' | C3' | H4' | 120.3° | 120.1° |
| O4' | C4' | C3' | O3' | 170.9° | 178.8° |
| O4' | C4' | C3' | C2' | 49.2° | 61.2° |
| O4' | C4' | C3' | H3' | 70.0° | 58.6° |
| C4' | O4' | C6' | C1' | 57.8° | 67.6° |
| C4' | O4' | C6' | H6'1 | 178.5° | 172.4° |
| C4' | O4' | C6' | H6'2 | 62.9° | 52.5° |
| C3' | C4' | O4' | C6' | 52.9° | 67.6° |
| C4' | C3' | O3' | C2' | 122.1° | 119.6° |
| C4' | C3' | O3' | H3' | 118.9° | 120.2° |
| C4' | C3' | C2' | H3' | 119.2° | 119.8° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | C1' | 53.9° | 53.6° |
| C4' | C3' | C2' | H2' | 174.2° | 66.0° |
| C4' | C3' | C2' | H2'' | 66.0° | 173.5° |
| H4' | C4' | O4' | C6' | 67.2° | 52.5° |
| H4' | C4' | C3' | O3' | 50.6° | 61.1° |
| H4' | C4' | C3' | C2' | 71.0° | 58.9° |
| H4' | C4' | C3' | H3' | 169.7° | 178.7° |
| O4' | C6' | C1' | C2' | 57.7° | 61.3° |
| O4' | C6' | C1' | H6'1 | 120.6° | 120.1° |
| O4' | C6' | C1' | H6'2 | 120.8° | 120.1° |
| O4' | C6' | C1' | N1 | 63.9° | 58.6° |
| O4' | C6' | C1' | H1' | 175.9° | 178.8° |
| O4' | C6' | H6'1 | H6'2 | 119.2° | 119.9° |
| O3' | C3' | C2' | H3' | 119.1° | 120.2° |
| O3' | C3' | C2' | C1' | 175.6° | 173.5° |
| O3' | C3' | C2' | H2' | 64.1° | 53.9° |
| O3' | C3' | C2' | H2'' | 55.7° | 66.6° |
| C2' | C3' | O3' | HO3' | 58.0° | 60.4° |
| C3' | C2' | C1' | H2' | 120.3° | 119.7° |
| C3' | C2' | C1' | H2'' | 119.7° | 119.8° |
| C3' | C2' | H2' | H2'' | 118.8° | 120.5° |
| C3' | C2' | C1' | C6' | 57.4° | 53.6° |
| C3' | C2' | C1' | N1 | 64.3° | 66.3° |
| C3' | C2' | C1' | H1' | 175.6° | 173.6° |
| H3' | C3' | O3' | HO3' | 61.0° | 59.8° |
| H3' | C3' | C2' | C1' | 65.3° | 66.2° |
| H3' | C3' | C2' | H2' | 54.9° | 174.1° |
| H3' | C3' | C2' | H2'' | 174.8° | 53.6° |
| C1' | C2' | H2' | H2'' | 119.1° | 120.5° |
| C2' | C1' | C6' | N1 | 121.6° | 119.9° |
| C2' | C1' | C6' | H1' | 118.2° | 119.9° |
| C2' | C1' | N1 | H1' | 120.0° | 120.2° |
| C2' | C1' | C6' | H6'1 | 178.3° | 178.6° |
| C2' | C1' | C6' | H6'2 | 63.1° | 58.8° |
| C2' | C1' | N1 | C2 | 103.4° | 63.0° |
| C2' | C1' | N1 | C6 | 75.7° | 117.0° |
| H2' | C2' | C1' | C6' | 177.6° | 66.0° |
| H2' | C2' | C1' | N1 | 56.0° | 174.1° |
| H2' | C2' | C1' | H1' | 64.1° | 53.9° |
| H2'' | C2' | C1' | C6' | 62.4° | 173.5° |
| H2'' | C2' | C1' | N1 | 176.0° | 53.6° |
| H2'' | C2' | C1' | H1' | 55.9° | 66.6° |
| C6' | C1' | N1 | H1' | 120.2° | 120.2° |
| C1' | C6' | H6'1 | H6'2 | 119.2° | 119.8° |
| C6' | C1' | N1 | C2 | 136.8° | 177.4° |
| C6' | C1' | N1 | C6 | 44.1° | 2.6° |
| N1 | C1' | C6' | H6'1 | 56.7° | 61.5° |
| N1 | C1' | C6' | H6'2 | 175.3° | 178.7° |
| C1' | N1 | C2 | C6 | 179.1° | 180.0° |
| C1' | N1 | C2 | O2 | 1.2° | 0.0° |
| C1' | N1 | C2 | N3 | 179.0° | 180.0° |
| C1' | N1 | C6 | C5 | 178.9° | 180.0° |
| C1' | N1 | C6 | H6 | 1.5° | 0.0° |
| H1' | C1' | C6' | H6'1 | 63.5° | 58.7° |
| H1' | C1' | C6' | H6'2 | 55.1° | 61.1° |
| H1' | C1' | N1 | C2 | 16.6° | 57.2° |
| H1' | C1' | N1 | C6 | 164.3° | 122.8° |
| N1 | C2 | O2 | N3 | 179.8° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.2° |
| N1 | C2 | N3 | H3 | 179.7° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C6 | H6 | 179.4° | 180.0° |
| C6 | N1 | C2 | O2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.3° |
| N1 | C6 | C5 | C5M | 179.8° | 180.0° |
| N1 | C6 | C5 | H6 | 179.5° | 180.0° |
| O2 | C2 | N3 | C4 | 179.9° | 179.7° |
| O2 | C2 | N3 | H3 | 0.1° | 0.1° |
| C2 | N3 | C4 | H3 | 179.8° | 179.8° |
| C2 | N3 | C4 | O4 | 179.5° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.5° |
| N3 | C4 | O4 | C5 | 179.7° | 179.5° |
| N3 | C4 | C5 | C5M | 179.9° | 179.8° |
| N3 | C4 | C5 | C6 | 0.2° | 0.5° |
| H3 | N3 | C4 | O4 | 0.7° | 0.2° |
| H3 | N3 | C4 | C5 | 179.6° | 179.7° |
| O4 | C4 | C5 | C5M | 0.2° | 0.3° |
| O4 | C4 | C5 | C6 | 179.5° | 180.0° |
| C4 | C5 | C5M | C6 | 179.8° | 179.7° |
| C4 | C5 | C5M | H71 | 120.2° | 0.3° |
| C4 | C5 | C5M | H72 | 0.2° | 119.7° |
| C4 | C5 | C5M | H73 | 119.8° | 120.3° |
| C4 | C5 | C6 | H6 | 179.6° | 179.7° |
| C5 | C5M | H71 | H72 | 120.1° | 120.0° |
| C5 | C5M | H71 | H73 | 120.0° | 120.1° |
| C5 | C5M | H72 | H73 | 120.0° | 120.0° |
| C5M | C5 | C6 | H6 | 0.7° | 0.0° |
| C6 | C5 | C5M | H71 | 60.0° | 180.0° |
| C6 | C5 | C5M | H72 | 179.9° | 60.0° |
| C6 | C5 | C5M | H73 | 59.9° | 60.0° |
| H71 | C5M | H72 | H73 | 119.9° | 120.0° |
