6HC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.08Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.43Å | 1.44Å | |
| C4' | C3' | sing | 1.53Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C6' | sing | 1.42Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.53Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.53Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C1' | C6' | sing | 1.53Å | 1.53Å | |
| C1' | N1 | sing | 1.47Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| C6' | H6'1 | sing | 1.09Å | 1.09Å | |
| C6' | H6'2 | sing | 1.09Å | 1.09Å | |
| N1 | C2 | sing | 1.35Å | 1.38Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.33Å | 1.36Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| N4 | H41 | sing | 0.97Å | 1.01Å | |
| N4 | H42 | sing | 0.97Å | 1.01Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C5 | H5 | sing | 1.08Å | 1.09Å | |
| C6 | H6 | sing | 1.08Å | 1.09Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 120.1° | 109.4° |
| OP1 | P | OP3 | 108.1° | 109.5° |
| OP1 | P | O5' | 108.6° | 109.5° |
| OP2 | P | OP3 | 108.1° | 109.4° |
| OP2 | P | O5' | 108.3° | 109.5° |
| P | OP2 | HOP2 | 120.2° | 106.9° |
| OP3 | P | O5' | 102.2° | 109.5° |
| P | OP3 | HOP3 | 108.0° | 106.8° |
| P | O5' | C5' | 120.1° | 106.8° |
| O5' | C5' | C4' | 112.3° | 109.5° |
| O5' | C5' | H5' | 109.4° | 109.5° |
| O5' | C5' | H5'' | 108.6° | 109.5° |
| C4' | C5' | H5' | 106.8° | 109.4° |
| C4' | C5' | H5'' | 109.9° | 109.5° |
| C5' | C4' | O4' | 109.8° | 109.4° |
| C5' | C4' | C3' | 109.7° | 109.4° |
| C5' | C4' | H4' | 108.7° | 109.4° |
| H5' | C5' | H5'' | 109.8° | 109.4° |
| O4' | C4' | C3' | 110.7° | 109.8° |
| O4' | C4' | H4' | 109.0° | 109.4° |
| C4' | O4' | C6' | 115.3° | 107.6° |
| C3' | C4' | H4' | 108.8° | 109.4° |
| C4' | C3' | O3' | 110.0° | 109.5° |
| C4' | C3' | C2' | 110.3° | 109.0° |
| C4' | C3' | H3' | 108.7° | 109.5° |
| O4' | C6' | C1' | 111.3° | 109.8° |
| O4' | C6' | H6'1 | 109.2° | 109.4° |
| O4' | C6' | H6'2 | 109.4° | 109.4° |
| O3' | C3' | C2' | 110.2° | 109.6° |
| O3' | C3' | H3' | 108.8° | 109.6° |
| C3' | O3' | HO3' | 110.0° | 106.8° |
| C2' | C3' | H3' | 108.9° | 109.6° |
| C3' | C2' | C1' | 111.7° | 108.6° |
| C3' | C2' | H2' | 108.8° | 109.6° |
| C3' | C2' | H2'' | 108.7° | 109.6° |
| C1' | C2' | H2' | 108.8° | 109.7° |
| C1' | C2' | H2'' | 108.7° | 109.7° |
| C2' | C1' | C6' | 108.8° | 109.1° |
| C2' | C1' | N1 | 110.4° | 109.6° |
| C2' | C1' | H1' | 108.8° | 109.6° |
| H2' | C2' | H2'' | 110.1° | 109.7° |
| C6' | C1' | N1 | 111.3° | 109.6° |
| C6' | C1' | H1' | 108.7° | 109.6° |
| C1' | C6' | H6'1 | 109.2° | 109.4° |
| C1' | C6' | H6'2 | 109.3° | 109.4° |
| N1 | C1' | H1' | 108.8° | 109.5° |
| C1' | N1 | C2 | 117.2° | 119.8° |
| C1' | N1 | C6 | 121.5° | 119.8° |
| H6'1 | C6' | H6'2 | 108.4° | 109.3° |
| C2 | N1 | C6 | 121.3° | 120.4° |
| N1 | C2 | O2 | 120.1° | 119.5° |
| N1 | C2 | N3 | 118.4° | 121.1° |
| N1 | C6 | C5 | 120.7° | 119.3° |
| N1 | C6 | H6 | 119.8° | 120.4° |
| O2 | C2 | N3 | 121.5° | 119.4° |
| C2 | N3 | C4 | 121.0° | 120.7° |
| N3 | C4 | N4 | 119.1° | 120.2° |
| N3 | C4 | C5 | 121.0° | 119.7° |
| N4 | C4 | C5 | 119.9° | 120.1° |
| C4 | N4 | H41 | 120.0° | 119.9° |
| C4 | N4 | H42 | 119.9° | 120.1° |
| C4 | C5 | C6 | 117.6° | 118.9° |
| C4 | C5 | H5 | 121.3° | 120.5° |
| H41 | N4 | H42 | 120.1° | 120.0° |
| C6 | C5 | H5 | 121.1° | 120.5° |
| C5 | C6 | H6 | 119.5° | 120.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 124.6° | 119.9° |
| OP1 | P | OP2 | O5' | 125.4° | 120.0° |
| OP1 | P | OP3 | O5' | 114.4° | 120.0° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
| OP1 | P | O5' | C5' | 172.5° | 60.0° |
| OP2 | P | OP3 | O5' | 114.1° | 120.1° |
| OP2 | P | OP3 | HOP3 | 48.5° | 60.0° |
| OP2 | P | O5' | C5' | 55.5° | 180.0° |
| OP3 | P | OP2 | HOP2 | 55.5° | 60.0° |
| OP3 | P | O5' | C5' | 58.5° | 60.0° |
| O5' | P | OP2 | HOP2 | 54.5° | 180.0° |
| O5' | P | OP3 | HOP3 | 65.6° | 60.0° |
| P | O5' | C5' | C4' | 150.0° | 180.0° |
| P | O5' | C5' | H5' | 91.6° | 60.0° |
| P | O5' | C5' | H5'' | 28.2° | 60.0° |
| O5' | C5' | C4' | H5' | 119.9° | 120.0° |
| O5' | C5' | C4' | H5'' | 121.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| O5' | C5' | C4' | O4' | 58.3° | 60.0° |
| O5' | C5' | C4' | C3' | 63.6° | 179.7° |
| O5' | C5' | C4' | H4' | 177.6° | 59.9° |
| C4' | C5' | H5' | H5'' | 119.2° | 120.0° |
| C5' | C4' | O4' | C3' | 121.3° | 120.1° |
| C5' | C4' | O4' | H4' | 119.1° | 119.9° |
| C5' | C4' | C3' | H4' | 118.8° | 119.9° |
| C5' | C4' | O4' | C6' | 177.2° | 172.3° |
| C5' | C4' | C3' | O3' | 63.9° | 58.8° |
| C5' | C4' | C3' | C2' | 174.3° | 178.7° |
| C5' | C4' | C3' | H3' | 55.1° | 61.4° |
| H5' | C5' | C4' | O4' | 178.3° | 180.0° |
| H5' | C5' | C4' | C3' | 56.4° | 59.7° |
| H5' | C5' | C4' | H4' | 62.5° | 60.2° |
| H5'' | C5' | C4' | O4' | 62.7° | 60.0° |
| H5'' | C5' | C4' | C3' | 175.4° | 60.3° |
| H5'' | C5' | C4' | H4' | 56.6° | 179.9° |
| O4' | C4' | C3' | H4' | 119.8° | 120.1° |
| O4' | C4' | C3' | O3' | 174.7° | 178.8° |
| O4' | C4' | C3' | C2' | 53.0° | 61.2° |
| O4' | C4' | C3' | H3' | 66.3° | 58.6° |
| C4' | O4' | C6' | C1' | 57.3° | 67.6° |
| C4' | O4' | C6' | H6'1 | 178.0° | 172.3° |
| C4' | O4' | C6' | H6'2 | 63.5° | 52.5° |
| C3' | C4' | O4' | C6' | 55.9° | 67.6° |
| C4' | C3' | O3' | C2' | 121.8° | 119.6° |
| C4' | C3' | O3' | H3' | 119.0° | 120.2° |
| C4' | C3' | C2' | H3' | 119.2° | 119.9° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | C1' | 54.7° | 53.7° |
| C4' | C3' | C2' | H2' | 174.9° | 66.1° |
| C4' | C3' | C2' | H2'' | 65.2° | 173.5° |
| H4' | C4' | O4' | C6' | 63.8° | 52.5° |
| H4' | C4' | C3' | O3' | 54.9° | 61.1° |
| H4' | C4' | C3' | C2' | 66.8° | 58.8° |
| H4' | C4' | C3' | H3' | 173.9° | 178.7° |
| O4' | C6' | C1' | C2' | 54.8° | 61.3° |
| O4' | C6' | C1' | H6'1 | 120.7° | 120.1° |
| O4' | C6' | C1' | H6'2 | 120.9° | 120.1° |
| O4' | C6' | C1' | N1 | 67.1° | 58.6° |
| O4' | C6' | C1' | H1' | 173.0° | 178.7° |
| O4' | C6' | H6'1 | H6'2 | 119.1° | 119.8° |
| O3' | C3' | C2' | H3' | 119.2° | 120.2° |
| O3' | C3' | C2' | C1' | 176.3° | 173.6° |
| O3' | C3' | C2' | H2' | 63.5° | 53.8° |
| O3' | C3' | C2' | H2'' | 56.4° | 66.6° |
| C2' | C3' | O3' | HO3' | 58.3° | 60.5° |
| C3' | C2' | C1' | H2' | 120.1° | 119.8° |
| C3' | C2' | C1' | H2'' | 119.9° | 119.7° |
| C3' | C2' | H2' | H2'' | 119.0° | 120.4° |
| C3' | C2' | C1' | C6' | 55.0° | 53.7° |
| C3' | C2' | C1' | N1 | 67.4° | 66.2° |
| C3' | C2' | C1' | H1' | 173.2° | 173.6° |
| H3' | C3' | O3' | HO3' | 61.0° | 59.8° |
| H3' | C3' | C2' | C1' | 64.4° | 66.2° |
| H3' | C3' | C2' | H2' | 55.7° | 174.0° |
| H3' | C3' | C2' | H2'' | 175.6° | 53.6° |
| C1' | C2' | H2' | H2'' | 119.1° | 120.5° |
| C2' | C1' | C6' | N1 | 121.9° | 119.9° |
| C2' | C1' | C6' | H1' | 118.3° | 119.9° |
| C2' | C1' | N1 | H1' | 119.3° | 120.2° |
| C2' | C1' | C6' | H6'1 | 175.5° | 178.5° |
| C2' | C1' | C6' | H6'2 | 66.1° | 58.8° |
| C2' | C1' | N1 | C2 | 102.9° | 63.1° |
| C2' | C1' | N1 | C6 | 77.5° | 117.0° |
| H2' | C2' | C1' | C6' | 175.1° | 66.0° |
| H2' | C2' | C1' | N1 | 52.6° | 174.0° |
| H2' | C2' | C1' | H1' | 66.7° | 53.9° |
| H2'' | C2' | C1' | C6' | 64.9° | 173.4° |
| H2'' | C2' | C1' | N1 | 172.6° | 53.5° |
| H2'' | C2' | C1' | H1' | 53.3° | 66.7° |
| C6' | C1' | N1 | H1' | 119.7° | 120.2° |
| C1' | C6' | H6'1 | H6'2 | 119.0° | 119.8° |
| C6' | C1' | N1 | C2 | 136.2° | 177.3° |
| C6' | C1' | N1 | C6 | 43.4° | 2.6° |
| N1 | C1' | C6' | H6'1 | 53.6° | 61.5° |
| N1 | C1' | C6' | H6'2 | 172.0° | 178.7° |
| C1' | N1 | C2 | C6 | 179.6° | 179.9° |
| C1' | N1 | C2 | O2 | 0.0° | 0.1° |
| C1' | N1 | C2 | N3 | 179.6° | 180.0° |
| C1' | N1 | C6 | C5 | 179.7° | 179.7° |
| C1' | N1 | C6 | H6 | 0.3° | 0.0° |
| H1' | C1' | C6' | H6'1 | 66.3° | 58.6° |
| H1' | C1' | C6' | H6'2 | 52.1° | 61.1° |
| H1' | C1' | N1 | C2 | 16.5° | 57.1° |
| H1' | C1' | N1 | C6 | 163.2° | 122.8° |
| N1 | C2 | O2 | N3 | 179.6° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.4° |
| C2 | N1 | C6 | H6 | 179.9° | 180.0° |
| C6 | N1 | C2 | O2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| O2 | C2 | N3 | C4 | 179.6° | 179.9° |
| C2 | N3 | C4 | N4 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.2° |
| N3 | C4 | N4 | C5 | 179.7° | 179.8° |
| N3 | C4 | N4 | H41 | 179.9° | 0.1° |
| N3 | C4 | N4 | H42 | 0.9° | 179.7° |
| N3 | C4 | C5 | C6 | 0.2° | 0.5° |
| N3 | C4 | C5 | H5 | 179.9° | 180.0° |
| C4 | N4 | H41 | H42 | 179.2° | 179.8° |
| N4 | C4 | C5 | C6 | 179.9° | 179.7° |
| N4 | C4 | C5 | H5 | 0.4° | 0.2° |
| C5 | C4 | N4 | H41 | 0.2° | 179.7° |
| C5 | C4 | N4 | H42 | 179.4° | 0.5° |
| C4 | C5 | C6 | H5 | 179.7° | 179.5° |
| C4 | C5 | C6 | H6 | 179.7° | 179.7° |
| H5 | C5 | C6 | H6 | 0.1° | 0.3° |
