6HA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.48Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
P | O5' | sing | 1.61Å | 1.61Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.44Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C5' | H5' | sing | 1.09Å | 1.08Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.43Å | 1.45Å | |
C4' | C3' | sing | 1.53Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.09Å | |
O4' | C6' | sing | 1.43Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C2' | sing | 1.53Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.09Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.53Å | 1.51Å | |
C2' | H2' | sing | 1.09Å | 1.09Å | |
C2' | H2'' | sing | 1.09Å | 1.10Å | |
C1' | C6' | sing | 1.53Å | 1.52Å | |
C1' | N9 | sing | 1.47Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.09Å | |
C6' | H6'1 | sing | 1.09Å | 1.09Å | |
C6' | H6'2 | sing | 1.09Å | 1.09Å | |
N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.29Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.09Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.39Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
C6 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
N6 | H61 | sing | 0.97Å | 1.01Å | |
N6 | H62 | sing | 0.97Å | 1.01Å | |
N1 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.09Å | |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 120.0° | 109.5° |
OP1 | P | OP3 | 108.2° | 109.5° |
OP1 | P | O5' | 108.3° | 109.4° |
OP2 | P | OP3 | 108.2° | 109.4° |
OP2 | P | O5' | 108.4° | 109.5° |
P | OP2 | HOP2 | 120.0° | 106.8° |
OP3 | P | O5' | 102.3° | 109.5° |
P | OP3 | HOP3 | 108.2° | 106.8° |
P | O5' | C5' | 121.3° | 106.8° |
O5' | C5' | C4' | 111.5° | 109.5° |
O5' | C5' | H5' | 109.6° | 109.5° |
O5' | C5' | H5'' | 108.7° | 109.5° |
C4' | C5' | H5' | 107.0° | 109.4° |
C4' | C5' | H5'' | 110.2° | 109.4° |
C5' | C4' | O4' | 109.1° | 109.4° |
C5' | C4' | C3' | 109.1° | 109.4° |
C5' | C4' | H4' | 109.0° | 109.4° |
H5' | C5' | H5'' | 109.9° | 109.5° |
O4' | C4' | C3' | 111.5° | 109.8° |
O4' | C4' | H4' | 109.2° | 109.4° |
C4' | O4' | C6' | 116.3° | 107.6° |
C3' | C4' | H4' | 108.9° | 109.4° |
C4' | C3' | O3' | 110.5° | 109.5° |
C4' | C3' | C2' | 110.8° | 109.1° |
C4' | C3' | H3' | 108.4° | 109.5° |
O4' | C6' | C1' | 110.8° | 109.8° |
O4' | C6' | H6'1 | 109.3° | 109.4° |
O4' | C6' | H6'2 | 109.4° | 109.5° |
O3' | C3' | C2' | 110.2° | 109.6° |
O3' | C3' | H3' | 108.5° | 109.5° |
C3' | O3' | HO3' | 110.5° | 106.8° |
C2' | C3' | H3' | 108.6° | 109.5° |
C3' | C2' | C1' | 110.6° | 108.6° |
C3' | C2' | H2' | 108.9° | 109.6° |
C3' | C2' | H2'' | 108.9° | 109.6° |
C1' | C2' | H2' | 109.0° | 109.6° |
C1' | C2' | H2'' | 109.1° | 109.7° |
C2' | C1' | C6' | 107.6° | 109.1° |
C2' | C1' | N9 | 110.0° | 109.6° |
C2' | C1' | H1' | 109.5° | 109.5° |
H2' | C2' | H2'' | 110.3° | 109.7° |
C6' | C1' | N9 | 110.6° | 109.5° |
C6' | C1' | H1' | 109.6° | 109.6° |
C1' | C6' | H6'1 | 109.4° | 109.4° |
C1' | C6' | H6'2 | 109.4° | 109.4° |
N9 | C1' | H1' | 109.5° | 109.5° |
C1' | N9 | C8 | 129.6° | 126.3° |
C1' | N9 | C4 | 127.0° | 126.3° |
H6'1 | C6' | H6'2 | 108.5° | 109.3° |
C8 | N9 | C4 | 103.4° | 107.5° |
N9 | C8 | N7 | 117.7° | 110.0° |
N9 | C8 | H8 | 121.2° | 125.0° |
N9 | C4 | C5 | 106.4° | 106.0° |
N9 | C4 | N3 | 126.5° | 134.9° |
N7 | C8 | H8 | 121.1° | 125.0° |
C8 | N7 | C5 | 101.5° | 109.4° |
N7 | C5 | C6 | 132.4° | 134.7° |
N7 | C5 | C4 | 111.0° | 107.2° |
C6 | C5 | C4 | 116.6° | 118.2° |
C5 | C6 | N6 | 123.2° | 120.7° |
C5 | C6 | N1 | 117.4° | 118.4° |
C5 | C4 | N3 | 127.1° | 119.1° |
N6 | C6 | N1 | 119.4° | 120.8° |
C6 | N6 | H61 | 119.9° | 120.0° |
C6 | N6 | H62 | 120.1° | 120.0° |
C6 | N1 | C2 | 120.6° | 121.2° |
H61 | N6 | H62 | 120.0° | 120.0° |
N1 | C2 | N3 | 127.1° | 122.5° |
N1 | C2 | H2 | 116.5° | 118.7° |
N3 | C2 | H2 | 116.4° | 118.8° |
C2 | N3 | C4 | 111.2° | 120.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 124.7° | 120.1° |
OP1 | P | OP2 | O5' | 125.1° | 119.9° |
OP1 | P | OP3 | O5' | 114.2° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 178.6° | 60.0° |
OP2 | P | OP3 | O5' | 114.3° | 120.0° |
OP2 | P | OP3 | HOP3 | 48.5° | 59.9° |
OP2 | P | O5' | C5' | 46.9° | 180.0° |
OP3 | P | OP2 | HOP2 | 55.3° | 60.1° |
OP3 | P | O5' | C5' | 67.3° | 60.0° |
O5' | P | OP2 | HOP2 | 54.9° | 180.0° |
O5' | P | OP3 | HOP3 | 65.8° | 60.1° |
P | O5' | C5' | C4' | 164.4° | 180.0° |
P | O5' | C5' | H5' | 77.3° | 60.0° |
P | O5' | C5' | H5'' | 42.7° | 60.0° |
O5' | C5' | C4' | H5' | 119.8° | 120.0° |
O5' | C5' | C4' | H5'' | 120.8° | 120.1° |
O5' | C5' | H5' | H5'' | 119.3° | 120.1° |
O5' | C5' | C4' | O4' | 63.7° | 60.0° |
O5' | C5' | C4' | C3' | 58.3° | 179.7° |
O5' | C5' | C4' | H4' | 177.1° | 59.8° |
C4' | C5' | H5' | H5'' | 119.6° | 119.9° |
C5' | C4' | O4' | C3' | 120.6° | 120.1° |
C5' | C4' | O4' | H4' | 119.1° | 119.8° |
C5' | C4' | C3' | H4' | 118.8° | 119.9° |
C5' | C4' | O4' | C6' | 171.1° | 172.3° |
C5' | C4' | C3' | O3' | 68.0° | 58.7° |
C5' | C4' | C3' | C2' | 169.6° | 178.7° |
C5' | C4' | C3' | H3' | 50.7° | 61.4° |
H5' | C5' | C4' | O4' | 176.5° | 180.0° |
H5' | C5' | C4' | C3' | 61.5° | 59.7° |
H5' | C5' | C4' | H4' | 57.3° | 60.2° |
H5'' | C5' | C4' | O4' | 57.1° | 60.1° |
H5'' | C5' | C4' | C3' | 179.1° | 60.2° |
H5'' | C5' | C4' | H4' | 62.1° | 179.9° |
O4' | C4' | C3' | H4' | 120.6° | 120.1° |
O4' | C4' | C3' | O3' | 171.4° | 178.8° |
O4' | C4' | C3' | C2' | 49.1° | 61.2° |
O4' | C4' | C3' | H3' | 69.9° | 58.7° |
C4' | O4' | C6' | C1' | 55.9° | 67.6° |
C4' | O4' | C6' | H6'1 | 176.5° | 172.3° |
C4' | O4' | C6' | H6'2 | 64.8° | 52.5° |
C3' | C4' | O4' | C6' | 50.5° | 67.6° |
C4' | C3' | O3' | C2' | 122.7° | 119.7° |
C4' | C3' | O3' | H3' | 118.6° | 120.1° |
C4' | C3' | C2' | H3' | 118.8° | 119.9° |
C4' | C3' | O3' | HO3' | 179.9° | 180.0° |
C4' | C3' | C2' | C1' | 56.0° | 53.7° |
C4' | C3' | C2' | H2' | 175.8° | 66.0° |
C4' | C3' | C2' | H2'' | 63.9° | 173.5° |
H4' | C4' | O4' | C6' | 69.9° | 52.5° |
H4' | C4' | C3' | O3' | 50.8° | 61.2° |
H4' | C4' | C3' | C2' | 71.5° | 58.8° |
H4' | C4' | C3' | H3' | 169.5° | 178.7° |
O4' | C6' | C1' | C2' | 58.6° | 61.3° |
O4' | C6' | C1' | H6'1 | 120.5° | 120.1° |
O4' | C6' | C1' | H6'2 | 120.7° | 120.1° |
O4' | C6' | C1' | N9 | 61.6° | 58.6° |
O4' | C6' | C1' | H1' | 177.6° | 178.8° |
O4' | C6' | H6'1 | H6'2 | 119.3° | 119.9° |
O3' | C3' | C2' | H3' | 118.6° | 120.2° |
O3' | C3' | C2' | C1' | 178.6° | 173.6° |
O3' | C3' | C2' | H2' | 61.7° | 53.9° |
O3' | C3' | C2' | H2'' | 58.7° | 66.6° |
C2' | C3' | O3' | HO3' | 57.4° | 60.4° |
C3' | C2' | C1' | H2' | 119.7° | 119.7° |
C3' | C2' | C1' | H2'' | 119.8° | 119.8° |
C3' | C2' | H2' | H2'' | 119.4° | 120.4° |
C3' | C2' | C1' | C6' | 60.0° | 53.7° |
C3' | C2' | C1' | N9 | 60.6° | 66.2° |
C3' | C2' | C1' | H1' | 179.1° | 173.6° |
H3' | C3' | O3' | HO3' | 61.3° | 59.8° |
H3' | C3' | C2' | C1' | 62.8° | 66.2° |
H3' | C3' | C2' | H2' | 56.9° | 174.1° |
H3' | C3' | C2' | H2'' | 177.3° | 53.6° |
C1' | C2' | H2' | H2'' | 119.8° | 120.5° |
C2' | C1' | C6' | N9 | 120.2° | 119.9° |
C2' | C1' | C6' | H1' | 119.0° | 119.9° |
C2' | C1' | N9 | H1' | 120.4° | 120.2° |
C2' | C1' | C6' | H6'1 | 179.1° | 178.6° |
C2' | C1' | C6' | H6'2 | 62.1° | 58.8° |
C2' | C1' | N9 | C8 | 75.5° | 66.3° |
C2' | C1' | N9 | C4 | 102.3° | 113.7° |
H2' | C2' | C1' | C6' | 179.7° | 66.0° |
H2' | C2' | C1' | N9 | 59.1° | 174.1° |
H2' | C2' | C1' | H1' | 61.3° | 53.9° |
H2'' | C2' | C1' | C6' | 59.8° | 173.4° |
H2'' | C2' | C1' | N9 | 179.7° | 53.5° |
H2'' | C2' | C1' | H1' | 59.3° | 66.6° |
C6' | C1' | N9 | H1' | 120.8° | 120.2° |
C1' | C6' | H6'1 | H6'2 | 119.3° | 119.8° |
C6' | C1' | N9 | C8 | 43.2° | 53.3° |
C6' | C1' | N9 | C4 | 138.9° | 126.7° |
N9 | C1' | C6' | H6'1 | 58.9° | 61.5° |
N9 | C1' | C6' | H6'2 | 177.7° | 178.7° |
C1' | N9 | C8 | C4 | 178.2° | 180.0° |
C1' | N9 | C8 | N7 | 178.2° | 180.0° |
C1' | N9 | C8 | H8 | 1.0° | 0.1° |
C1' | N9 | C4 | C5 | 178.2° | 179.8° |
C1' | N9 | C4 | N3 | 1.7° | 0.0° |
H1' | C1' | C6' | H6'1 | 61.9° | 58.7° |
H1' | C1' | C6' | H6'2 | 56.9° | 61.1° |
H1' | C1' | N9 | C8 | 164.1° | 173.5° |
H1' | C1' | N9 | C4 | 18.1° | 6.5° |
N9 | C8 | N7 | H8 | 179.3° | 179.9° |
N9 | C8 | N7 | C5 | 0.1° | 0.2° |
C8 | N9 | C4 | C5 | 0.1° | 0.2° |
C8 | N9 | C4 | N3 | 180.0° | 180.0° |
C4 | N9 | C8 | N7 | 0.0° | 0.0° |
C4 | N9 | C8 | H8 | 179.2° | 179.9° |
N9 | C4 | C5 | N7 | 0.2° | 0.3° |
N9 | C4 | C5 | C6 | 179.9° | 179.6° |
N9 | C4 | C5 | N3 | 179.9° | 179.8° |
N9 | C4 | N3 | C2 | 179.8° | 180.0° |
C8 | N7 | C5 | C6 | 180.0° | 179.5° |
C8 | N7 | C5 | C4 | 0.1° | 0.4° |
H8 | C8 | N7 | C5 | 179.2° | 179.8° |
N7 | C5 | C6 | C4 | 179.9° | 179.1° |
N7 | C5 | C6 | N6 | 0.4° | 0.7° |
N7 | C5 | C6 | N1 | 179.9° | 179.6° |
N7 | C5 | C4 | N3 | 180.0° | 179.8° |
C5 | C6 | N6 | N1 | 179.7° | 179.6° |
C5 | C6 | N6 | H61 | 0.0° | 179.7° |
C5 | C6 | N6 | H62 | 179.7° | 0.6° |
C5 | C6 | N1 | C2 | 0.1° | 0.4° |
C6 | C5 | C4 | N3 | 0.1° | 0.5° |
C4 | C5 | C6 | N6 | 179.7° | 179.8° |
C4 | C5 | C6 | N1 | 0.0° | 0.6° |
C5 | C4 | N3 | C2 | 0.0° | 0.2° |
C6 | N6 | H61 | H62 | 179.7° | 179.7° |
N6 | C6 | N1 | C2 | 179.6° | 180.0° |
N1 | C6 | N6 | H61 | 179.7° | 0.1° |
N1 | C6 | N6 | H62 | 0.6° | 179.8° |
C6 | N1 | C2 | N3 | 0.2° | 0.1° |
C6 | N1 | C2 | H2 | 180.0° | 179.9° |
N1 | C2 | N3 | H2 | 179.8° | 180.0° |
N1 | C2 | N3 | C4 | 0.1° | 0.0° |
H2 | C2 | N3 | C4 | 179.9° | 180.0° |