6GS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2B | PB | sing | 1.61Å | 1.52Å | |
| O1B | PB | doub | 1.48Å | 1.53Å | |
| PB | O3B | sing | 1.61Å | 1.51Å | |
| PB | O3A | sing | 1.61Å | 1.64Å | |
| O2A | PA | sing | 1.61Å | 1.52Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| O3A | PA | sing | 1.61Å | 1.63Å | |
| PA | O5' | sing | 1.61Å | 1.61Å | |
| PA | O1A | doub | 1.48Å | 1.50Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| F | C2' | sing | 1.40Å | 1.33Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C2' | C2M | sing | 1.53Å | 1.53Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| N1 | C6 | sing | 1.37Å | 1.36Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C2 | O2 | doub | 1.22Å | 1.36Å | |
| C2 | N3 | sing | 1.35Å | 1.35Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| C4 | O4 | doub | 1.22Å | 1.35Å | |
| N3 | H1 | sing | 0.97Å | 1.00Å | |
| C5 | H2 | sing | 1.08Å | 1.08Å | |
| C2M | H3 | sing | 1.09Å | 1.10Å | |
| C2M | H4 | sing | 1.09Å | 1.10Å | |
| C2M | H5 | sing | 1.09Å | 1.10Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H7 | sing | 1.08Å | 1.08Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C4' | H10 | sing | 1.09Å | 1.10Å | |
| C5' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| O2A | H14 | sing | 0.97Å | 0.95Å | |
| O3B | H15 | sing | 0.97Å | 0.95Å | |
| O2B | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2B | PB | O1B | 117.8° | 109.5° |
| O2B | PB | O3B | 112.6° | 109.5° |
| O2B | PB | O3A | 106.3° | 109.5° |
| PB | O2B | H17 | 109.5° | 114.0° |
| O1B | PB | O3B | 108.8° | 109.4° |
| O1B | PB | O3A | 105.3° | 109.5° |
| O3B | PB | O3A | 105.0° | 109.5° |
| PB | O3B | H15 | 109.5° | 114.0° |
| PB | O3A | PA | 127.9° | 134.0° |
| O2A | PA | O3A | 111.1° | 109.5° |
| O2A | PA | O5' | 112.1° | 109.5° |
| O2A | PA | O1A | 119.4° | 109.5° |
| PA | O2A | H14 | 109.5° | 114.0° |
| O3' | C3' | C4' | 113.6° | 110.6° |
| O3' | C3' | C2' | 114.4° | 110.5° |
| O3' | C3' | H8 | 109.9° | 110.5° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| C4' | C5' | O5' | 112.9° | 109.4° |
| C5' | C4' | C3' | 114.5° | 110.4° |
| C5' | C4' | O4' | 115.4° | 110.4° |
| C5' | C4' | H10 | 106.8° | 110.4° |
| C4' | C5' | H11 | 108.6° | 109.5° |
| C4' | C5' | H12 | 108.6° | 109.4° |
| C5' | O5' | PA | 125.5° | 123.0° |
| O5' | C5' | H11 | 108.6° | 109.5° |
| O5' | C5' | H12 | 108.6° | 109.5° |
| O3A | PA | O5' | 105.5° | 109.4° |
| O3A | PA | O1A | 109.4° | 109.5° |
| O5' | PA | O1A | 97.8° | 109.4° |
| C3' | C4' | O4' | 104.6° | 104.8° |
| C4' | C3' | C2' | 101.0° | 104.0° |
| C4' | C3' | H8 | 108.8° | 110.5° |
| C3' | C4' | H10 | 107.1° | 110.4° |
| C4' | O4' | C1' | 110.1° | 105.3° |
| O4' | C4' | H10 | 107.9° | 110.3° |
| C3' | C2' | F | 110.3° | 110.5° |
| C3' | C2' | C1' | 102.6° | 104.1° |
| C3' | C2' | C2M | 111.7° | 110.6° |
| C2' | C3' | H8 | 108.7° | 110.5° |
| F | C2' | C1' | 108.6° | 110.5° |
| F | C2' | C2M | 106.0° | 110.4° |
| O4' | C1' | C2' | 105.5° | 104.8° |
| O4' | C1' | N1 | 112.7° | 110.4° |
| O4' | C1' | H6 | 110.2° | 110.4° |
| C1' | C2' | C2M | 117.7° | 110.5° |
| C2' | C1' | N1 | 110.1° | 110.4° |
| C2' | C1' | H6 | 108.7° | 110.4° |
| C2' | C2M | H3 | 109.5° | 109.5° |
| C2' | C2M | H4 | 109.4° | 109.5° |
| C2' | C2M | H5 | 109.5° | 109.4° |
| C1' | N1 | C6 | 119.4° | 119.7° |
| C1' | N1 | C2 | 120.8° | 119.7° |
| N1 | C1' | H6 | 109.6° | 110.4° |
| C6 | N1 | C2 | 119.8° | 120.6° |
| N1 | C6 | C5 | 120.2° | 119.7° |
| N1 | C6 | H7 | 119.9° | 120.1° |
| N1 | C2 | O2 | 122.1° | 119.5° |
| N1 | C2 | N3 | 121.4° | 121.0° |
| C6 | C5 | C4 | 118.4° | 119.1° |
| C6 | C5 | H2 | 120.8° | 120.5° |
| C5 | C6 | H7 | 119.9° | 120.2° |
| O2 | C2 | N3 | 116.6° | 119.5° |
| C2 | N3 | C4 | 119.9° | 120.3° |
| C2 | N3 | H1 | 120.0° | 119.9° |
| C5 | C4 | N3 | 120.4° | 119.4° |
| C5 | C4 | O4 | 120.2° | 120.3° |
| C4 | C5 | H2 | 120.8° | 120.4° |
| N3 | C4 | O4 | 119.4° | 120.3° |
| C4 | N3 | H1 | 120.0° | 119.8° |
| H3 | C2M | H4 | 109.5° | 109.5° |
| H3 | C2M | H5 | 109.5° | 109.5° |
| H4 | C2M | H5 | 109.5° | 109.5° |
| H11 | C5' | H12 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2B | PB | O1B | O3B | 129.7° | 120.0° |
| O2B | PB | O1B | O3A | 118.2° | 120.0° |
| O2B | PB | O3B | O3A | 115.2° | 120.1° |
| O2B | PB | O3A | PA | 1.4° | 80.0° |
| O2B | PB | O3B | H15 | 132.5° | 59.9° |
| O1B | PB | O3B | O3A | 112.3° | 120.0° |
| O1B | PB | O3A | PA | 127.1° | 40.0° |
| O1B | PB | O3B | H15 | 0.0° | 60.0° |
| O1B | PB | O2B | H17 | 0.0° | 180.0° |
| O3B | PB | O3A | PA | 118.1° | 160.0° |
| O3B | PB | O2B | H17 | 127.9° | 60.0° |
| PB | O3A | PA | O2A | 40.5° | 75.0° |
| PB | O3A | PA | O5' | 81.2° | 165.0° |
| PB | O3A | PA | O1A | 174.5° | 45.1° |
| O3A | PB | O3B | H15 | 112.3° | 180.0° |
| O3A | PB | O2B | H17 | 117.7° | 60.0° |
| O2A | PA | O5' | C5' | 49.0° | 65.0° |
| O2A | PA | O3A | O5' | 121.7° | 120.0° |
| O2A | PA | O3A | O1A | 134.0° | 120.0° |
| O2A | PA | O5' | O1A | 126.2° | 120.0° |
| O3' | C3' | C4' | C5' | 71.8° | 98.5° |
| O3' | C3' | C4' | C2' | 123.0° | 118.7° |
| O3' | C3' | C4' | H8 | 122.8° | 122.7° |
| O3' | C3' | C4' | O4' | 160.8° | 142.6° |
| O3' | C3' | C2' | H8 | 123.2° | 122.6° |
| O3' | C3' | C2' | F | 44.9° | 0.1° |
| O3' | C3' | C2' | C1' | 160.4° | 118.7° |
| O3' | C3' | C2' | C2M | 72.7° | 122.5° |
| O3' | C3' | C4' | H10 | 46.4° | 23.8° |
| C4' | C5' | O5' | H11 | 120.5° | 120.0° |
| C4' | C5' | O5' | H12 | 120.5° | 119.9° |
| C4' | C5' | O5' | PA | 138.5° | 180.0° |
| C5' | C4' | C3' | O4' | 127.4° | 118.9° |
| C5' | C4' | C3' | H10 | 118.2° | 122.3° |
| C5' | C4' | O4' | H10 | 119.4° | 122.4° |
| C5' | C4' | C3' | C2' | 165.2° | 142.8° |
| C5' | C4' | O4' | C1' | 149.9° | 159.3° |
| C5' | C4' | C3' | H8 | 51.0° | 24.2° |
| C4' | C5' | H11 | H12 | 118.4° | 120.0° |
| C5' | O5' | PA | O3A | 72.0° | 175.0° |
| C5' | O5' | PA | O1A | 175.2° | 55.0° |
| O5' | C5' | C4' | C3' | 70.9° | 175.0° |
| O5' | C5' | C4' | O4' | 50.8° | 69.6° |
| O5' | C5' | C4' | H10 | 170.8° | 52.7° |
| O5' | C5' | H11 | H12 | 118.5° | 120.0° |
| O3A | PA | O5' | O1A | 112.7° | 120.0° |
| O3A | PA | O2A | H14 | 128.8° | 60.0° |
| PA | O5' | C5' | H11 | 101.0° | 60.0° |
| PA | O5' | C5' | H12 | 18.0° | 60.1° |
| O5' | PA | O2A | H14 | 113.4° | 59.9° |
| O1A | PA | O2A | H14 | 0.0° | 179.9° |
| C3' | C4' | O4' | H10 | 113.8° | 118.8° |
| C4' | C3' | C2' | H8 | 114.3° | 118.7° |
| C4' | C3' | C2' | F | 77.6° | 118.7° |
| C3' | C4' | O4' | C1' | 23.1° | 40.5° |
| C4' | C3' | C2' | C1' | 37.9° | 0.0° |
| C4' | C3' | C2' | C2M | 164.9° | 118.7° |
| C4' | C3' | O3' | H9 | 180.0° | 65.3° |
| C3' | C4' | C5' | H11 | 168.6° | 55.0° |
| C3' | C4' | C5' | H12 | 49.6° | 65.1° |
| O4' | C4' | C3' | C2' | 37.8° | 24.0° |
| C4' | O4' | C1' | C2' | 1.5° | 40.5° |
| C4' | O4' | C1' | N1 | 118.7° | 159.3° |
| C4' | O4' | C1' | H6 | 118.6° | 78.4° |
| O4' | C4' | C3' | H8 | 76.4° | 94.7° |
| O4' | C4' | C5' | H11 | 69.7° | 170.4° |
| O4' | C4' | C5' | H12 | 171.3° | 50.3° |
| C3' | C2' | F | C1' | 111.7° | 114.7° |
| C3' | C2' | F | C2M | 121.0° | 122.7° |
| C3' | C2' | C1' | O4' | 25.2° | 24.0° |
| C3' | C2' | C1' | C2M | 123.1° | 118.8° |
| C3' | C2' | C1' | N1 | 96.6° | 142.8° |
| C3' | C2' | C2M | H3 | 180.0° | 179.1° |
| C3' | C2' | C2M | H4 | 60.0° | 60.9° |
| C3' | C2' | C2M | H5 | 60.0° | 59.1° |
| C3' | C2' | C1' | H6 | 143.3° | 94.9° |
| C2' | C3' | O3' | H9 | 64.7° | 180.0° |
| C2' | C3' | C4' | H10 | 76.6° | 94.8° |
| F | C2' | C1' | O4' | 91.5° | 142.7° |
| F | C2' | C1' | C2M | 120.2° | 122.5° |
| F | C2' | C1' | N1 | 146.6° | 98.6° |
| F | C2' | C2M | H3 | 59.9° | 56.4° |
| F | C2' | C2M | H4 | 179.9° | 176.4° |
| F | C2' | C2M | H5 | 60.1° | 63.6° |
| F | C2' | C1' | H6 | 26.6° | 23.8° |
| F | C2' | C3' | H8 | 168.1° | 122.7° |
| O4' | C1' | C2' | N1 | 121.9° | 118.8° |
| O4' | C1' | C2' | H6 | 118.1° | 118.9° |
| O4' | C1' | C2' | C2M | 148.3° | 94.8° |
| O4' | C1' | N1 | H6 | 123.0° | 122.4° |
| O4' | C1' | N1 | C6 | 36.3° | 20.8° |
| O4' | C1' | N1 | C2 | 145.5° | 159.7° |
| C1' | O4' | C4' | H10 | 90.7° | 78.3° |
| C2' | C1' | N1 | H6 | 119.5° | 122.3° |
| C2' | C1' | N1 | C6 | 81.2° | 94.6° |
| C2' | C1' | N1 | C2 | 97.0° | 85.0° |
| C1' | C2' | C2M | H3 | 61.7° | 66.2° |
| C1' | C2' | C2M | H4 | 58.3° | 53.9° |
| C1' | C2' | C2M | H5 | 178.3° | 173.8° |
| C1' | C2' | C3' | H8 | 76.4° | 118.7° |
| C2M | C2' | C1' | N1 | 26.4° | 24.0° |
| C2' | C2M | H3 | H4 | 120.0° | 120.0° |
| C2' | C2M | H3 | H5 | 120.0° | 120.0° |
| C2' | C2M | H4 | H5 | 120.0° | 120.0° |
| C2M | C2' | C1' | H6 | 93.6° | 146.3° |
| C2M | C2' | C3' | H8 | 50.6° | 0.1° |
| C1' | N1 | C6 | C2 | 178.3° | 179.6° |
| C1' | N1 | C6 | C5 | 178.7° | 180.0° |
| C1' | N1 | C2 | O2 | 1.7° | 0.2° |
| C1' | N1 | C2 | N3 | 178.3° | 180.0° |
| C1' | N1 | C6 | H7 | 1.3° | 0.1° |
| N1 | C6 | C5 | H7 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 179.9° | 179.7° |
| C6 | N1 | C2 | N3 | 0.1° | 0.5° |
| N1 | C6 | C5 | C4 | 0.5° | 0.2° |
| N1 | C6 | C5 | H2 | 179.5° | 179.8° |
| C6 | N1 | C1' | H6 | 159.3° | 143.1° |
| C2 | N1 | C6 | C5 | 0.4° | 0.5° |
| N1 | C2 | O2 | N3 | 180.0° | 179.8° |
| N1 | C2 | N3 | C4 | 0.3° | 0.2° |
| N1 | C2 | N3 | H1 | 179.8° | 179.7° |
| C2 | N1 | C1' | H6 | 22.5° | 37.3° |
| C2 | N1 | C6 | H7 | 179.6° | 179.5° |
| C6 | C5 | C4 | H2 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.2° | 0.0° |
| C6 | C5 | C4 | O4 | 179.7° | 180.0° |
| O2 | C2 | N3 | C4 | 179.8° | 180.0° |
| O2 | C2 | N3 | H1 | 0.2° | 0.1° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| C2 | N3 | C4 | H1 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.9° | 180.0° |
| C5 | C4 | N3 | O4 | 179.9° | 179.9° |
| C5 | C4 | N3 | H1 | 179.8° | 180.0° |
| C4 | C5 | C6 | H7 | 179.5° | 179.7° |
| N3 | C4 | C5 | H2 | 179.8° | 179.9° |
| O4 | C4 | N3 | H1 | 0.1° | 0.1° |
| O4 | C4 | C5 | H2 | 0.3° | 0.0° |
| H2 | C5 | C6 | H7 | 0.5° | 0.2° |
| H3 | C2M | H4 | H5 | 120.0° | 120.0° |
| H8 | C3' | O3' | H9 | 57.9° | 57.4° |
| H8 | C3' | C4' | H10 | 169.2° | 146.5° |
| H10 | C4' | C5' | H11 | 50.3° | 67.3° |
| H10 | C4' | C5' | H12 | 68.7° | 172.6° |
