6FN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N6 | C6 | sing | 1.38Å | 1.45Å | |
N1 | C6 | doub | 1.33Å | 1.33Å | Aromatic |
N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
C6 | C5 | sing | 1.41Å | 1.38Å | Aromatic |
F32 | C2 | sing | 1.35Å | 1.37Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
C5 | N7 | sing | 1.36Å | 1.44Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.36Å | Aromatic |
N3 | C4 | sing | 1.33Å | 1.31Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.22Å | Aromatic |
C8 | N9 | sing | 1.36Å | 1.23Å | Aromatic |
N9 | C1' | sing | 1.47Å | 1.42Å | |
O2A | PA | doub | 1.48Å | 1.46Å | |
O3G | PG | doub | 1.48Å | 1.46Å | |
O3A | PA | sing | 1.61Å | 1.64Å | |
O3A | PB | sing | 1.61Å | 1.64Å | |
C1' | C2' | sing | 1.55Å | 1.50Å | |
C1' | O4' | sing | 1.44Å | 1.50Å | |
C2' | C3' | sing | 1.55Å | 1.45Å | |
PA | O5' | sing | 1.61Å | 1.65Å | |
PA | O1A | sing | 1.61Å | 1.46Å | |
O5' | C5' | sing | 1.43Å | 1.39Å | |
O3B | PG | sing | 1.61Å | 1.64Å | |
O3B | PB | sing | 1.61Å | 1.64Å | |
O4' | C4' | sing | 1.44Å | 1.46Å | |
PG | O1G | sing | 1.61Å | 1.46Å | |
PG | O2G | sing | 1.61Å | 1.65Å | |
C3' | C4' | sing | 1.54Å | 1.49Å | |
C3' | O3' | sing | 1.43Å | 1.46Å | |
PB | O1B | doub | 1.48Å | 1.46Å | |
PB | O2B | sing | 1.61Å | 1.46Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C4' | C33 | sing | 1.47Å | 1.51Å | |
C33 | C34 | trip | 1.17Å | 1.18Å | |
N6 | H1 | sing | 0.97Å | 1.00Å | |
N6 | H2 | sing | 0.97Å | 1.00Å | |
C8 | H3 | sing | 1.08Å | 1.08Å | |
C1' | H4 | sing | 1.09Å | 1.10Å | |
C2' | H5 | sing | 1.09Å | 1.10Å | |
C2' | H6 | sing | 1.09Å | 1.10Å | |
C3' | H7 | sing | 1.09Å | 1.10Å | |
O3' | H8 | sing | 0.97Å | 0.95Å | |
C34 | H9 | sing | 1.05Å | 1.06Å | |
C5' | H10 | sing | 1.09Å | 1.10Å | |
C5' | H11 | sing | 1.09Å | 1.10Å | |
O2G | H12 | sing | 0.97Å | 0.95Å | |
O1G | H13 | sing | 0.97Å | 0.95Å | |
O2B | H14 | sing | 0.97Å | 0.95Å | |
O1A | H15 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N6 | C6 | N1 | 121.3° | 120.7° |
N6 | C6 | C5 | 120.9° | 120.8° |
C6 | N6 | H1 | 109.5° | 120.0° |
C6 | N6 | H2 | 109.5° | 119.9° |
C6 | N1 | C2 | 121.5° | 121.1° |
N1 | C6 | C5 | 117.8° | 118.5° |
N1 | C2 | F32 | 119.6° | 118.7° |
N1 | C2 | N3 | 121.1° | 122.5° |
C6 | C5 | N7 | 136.1° | 134.6° |
C6 | C5 | C4 | 119.6° | 118.2° |
F32 | C2 | N3 | 119.3° | 118.8° |
C2 | N3 | C4 | 120.1° | 120.6° |
N7 | C5 | C4 | 104.3° | 107.1° |
C5 | N7 | C8 | 104.6° | 109.4° |
C5 | C4 | N3 | 120.0° | 119.1° |
C5 | C4 | N9 | 104.2° | 106.0° |
N7 | C8 | N9 | 105.8° | 110.0° |
N7 | C8 | H3 | 127.1° | 125.0° |
N3 | C4 | N9 | 135.8° | 134.8° |
C4 | N9 | C8 | 121.1° | 107.4° |
C4 | N9 | C1' | 119.6° | 126.3° |
C8 | N9 | C1' | 119.3° | 126.3° |
N9 | C8 | H3 | 127.1° | 125.0° |
N9 | C1' | C2' | 109.8° | 110.6° |
N9 | C1' | O4' | 110.0° | 110.6° |
N9 | C1' | H4 | 110.4° | 110.5° |
O2A | PA | O3A | 110.7° | 109.4° |
O2A | PA | O5' | 111.4° | 109.4° |
O2A | PA | O1A | 102.5° | 109.5° |
O3G | PG | O3B | 111.0° | 109.5° |
O3G | PG | O1G | 101.8° | 109.5° |
O3G | PG | O2G | 111.8° | 109.4° |
PA | O3A | PB | 122.8° | 134.0° |
O3A | PA | O5' | 109.6° | 109.5° |
O3A | PA | O1A | 111.3° | 109.5° |
O3A | PB | O3B | 108.7° | 109.5° |
O3A | PB | O1B | 111.1° | 109.5° |
O3A | PB | O2B | 112.0° | 109.5° |
C2' | C1' | O4' | 108.2° | 103.5° |
C1' | C2' | C3' | 104.2° | 102.1° |
C2' | C1' | H4 | 109.2° | 110.7° |
C1' | C2' | H5 | 110.7° | 110.9° |
C1' | C2' | H6 | 110.8° | 111.0° |
C1' | O4' | C4' | 105.0° | 107.0° |
O4' | C1' | H4 | 109.3° | 110.8° |
C2' | C3' | C4' | 106.0° | 104.2° |
C2' | C3' | O3' | 110.8° | 110.5° |
C3' | C2' | H5 | 110.8° | 110.9° |
C3' | C2' | H6 | 110.8° | 110.9° |
C2' | C3' | H7 | 109.6° | 110.5° |
O5' | PA | O1A | 111.3° | 109.5° |
PA | O5' | C5' | 117.6° | 123.0° |
PA | O1A | H15 | 109.5° | 114.0° |
O5' | C5' | C4' | 110.0° | 109.5° |
O5' | C5' | H10 | 109.3° | 109.5° |
O5' | C5' | H11 | 109.3° | 109.5° |
PG | O3B | PB | 121.6° | 134.0° |
O3B | PG | O1G | 111.6° | 109.5° |
O3B | PG | O2G | 109.0° | 109.4° |
O3B | PB | O1B | 112.4° | 109.5° |
O3B | PB | O2B | 110.4° | 109.5° |
O4' | C4' | C3' | 107.6° | 107.2° |
O4' | C4' | C5' | 110.7° | 109.9° |
O4' | C4' | C33 | 109.0° | 110.0° |
O1G | PG | O2G | 111.6° | 109.5° |
PG | O1G | H13 | 109.5° | 114.0° |
PG | O2G | H12 | 109.5° | 114.0° |
C4' | C3' | O3' | 111.7° | 110.4° |
C3' | C4' | C5' | 109.9° | 109.9° |
C3' | C4' | C33 | 110.9° | 109.9° |
C4' | C3' | H7 | 109.1° | 110.5° |
O3' | C3' | H7 | 109.5° | 110.5° |
C3' | O3' | H8 | 109.5° | 114.0° |
O1B | PB | O2B | 102.1° | 109.5° |
PB | O2B | H14 | 109.5° | 114.0° |
C5' | C4' | C33 | 108.7° | 109.9° |
C4' | C5' | H10 | 109.3° | 109.4° |
C4' | C5' | H11 | 109.3° | 109.5° |
C4' | C33 | C34 | 179.4° | 180.0° |
C33 | C34 | H9 | 180.0° | 180.0° |
H1 | N6 | H2 | 109.5° | 120.0° |
H5 | C2' | H6 | 109.5° | 110.9° |
H10 | C5' | H11 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N6 | C6 | N1 | C5 | 179.9° | 179.7° |
N6 | C6 | N1 | C2 | 179.9° | 180.0° |
N6 | C6 | C5 | N7 | 0.1° | 0.3° |
N6 | C6 | C5 | C4 | 179.9° | 179.7° |
C6 | N6 | H1 | H2 | 120.0° | 179.9° |
C6 | N1 | C2 | F32 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 0.0° | 0.1° |
N1 | C6 | C5 | N7 | 179.9° | 180.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.6° |
N1 | C6 | N6 | H1 | 0.0° | 0.0° |
N1 | C6 | N6 | H2 | 120.0° | 179.9° |
C2 | N1 | C6 | C5 | 0.0° | 0.3° |
N1 | C2 | F32 | N3 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 0.0° |
C6 | C5 | N7 | C4 | 180.0° | 179.5° |
C6 | C5 | N7 | C8 | 180.0° | 179.9° |
C6 | C5 | C4 | N3 | 0.0° | 0.6° |
C6 | C5 | C4 | N9 | 179.9° | 179.6° |
C5 | C6 | N6 | H1 | 179.9° | 179.7° |
C5 | C6 | N6 | H2 | 60.1° | 0.3° |
F32 | C2 | N3 | C4 | 179.9° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.3° |
C2 | N3 | C4 | N9 | 179.9° | 180.0° |
N7 | C5 | C4 | N3 | 180.0° | 179.9° |
N7 | C5 | C4 | N9 | 0.1° | 0.0° |
C5 | N7 | C8 | N9 | 0.0° | 0.9° |
C5 | N7 | C8 | H3 | 180.0° | 180.0° |
C4 | C5 | N7 | C8 | 0.0° | 0.6° |
C5 | C4 | N3 | N9 | 179.9° | 179.8° |
C5 | C4 | N9 | C8 | 0.1° | 0.5° |
C5 | C4 | N9 | C1' | 179.8° | 179.7° |
N7 | C8 | N9 | C4 | 0.0° | 0.9° |
N7 | C8 | N9 | H3 | 180.0° | 179.1° |
N7 | C8 | N9 | C1' | 179.8° | 179.9° |
N3 | C4 | N9 | C8 | 180.0° | 179.3° |
N3 | C4 | N9 | C1' | 0.3° | 0.0° |
C4 | N9 | C8 | C1' | 179.8° | 179.2° |
C4 | N9 | C1' | C2' | 80.6° | 85.0° |
C4 | N9 | C1' | O4' | 160.5° | 161.0° |
C4 | N9 | C8 | H3 | 180.0° | 179.9° |
C4 | N9 | C1' | H4 | 39.9° | 37.9° |
C8 | N9 | C1' | C2' | 99.2° | 94.1° |
C8 | N9 | C1' | O4' | 19.7° | 19.9° |
C8 | N9 | C1' | H4 | 140.4° | 143.0° |
N9 | C1' | C2' | O4' | 120.0° | 118.5° |
N9 | C1' | C2' | H4 | 121.2° | 122.8° |
N9 | C1' | O4' | H4 | 121.3° | 122.9° |
N9 | C1' | C2' | C3' | 99.8° | 155.5° |
N9 | C1' | O4' | C4' | 117.1° | 158.6° |
C1' | N9 | C8 | H3 | 0.2° | 0.8° |
N9 | C1' | C2' | H5 | 141.0° | 86.4° |
N9 | C1' | C2' | H6 | 19.3° | 37.3° |
O2A | PA | O3A | O5' | 123.2° | 119.9° |
O2A | PA | O3A | O1A | 113.3° | 120.0° |
O2A | PA | O3A | PB | 147.6° | 45.0° |
O2A | PA | O5' | O1A | 113.7° | 120.0° |
O2A | PA | O5' | C5' | 155.1° | 55.1° |
O2A | PA | O1A | H15 | 0.0° | 180.0° |
O3G | PG | O3B | O1G | 112.8° | 120.1° |
O3G | PG | O3B | O2G | 123.5° | 119.9° |
O3G | PG | O3B | PB | 103.3° | 39.9° |
O3G | PG | O1G | O2G | 119.4° | 120.0° |
O3G | PG | O2G | H12 | 0.0° | 180.0° |
O3G | PG | O1G | H13 | 0.0° | 59.9° |
O3A | PA | O5' | O1A | 123.5° | 120.0° |
O3A | PA | O5' | C5' | 82.1° | 175.0° |
PA | O3A | PB | O3B | 121.4° | 165.0° |
PA | O3A | PB | O1B | 114.3° | 45.0° |
PA | O3A | PB | O2B | 0.8° | 75.0° |
O3A | PA | O1A | H15 | 118.3° | 60.0° |
PB | O3A | PA | O5' | 89.2° | 165.0° |
PB | O3A | PA | O1A | 34.3° | 75.0° |
O3A | PB | O3B | PG | 71.3° | 160.0° |
O3A | PB | O3B | O1B | 123.5° | 120.0° |
O3A | PB | O3B | O2B | 123.2° | 120.0° |
O3A | PB | O1B | O2B | 119.6° | 120.0° |
O3A | PB | O2B | H14 | 119.0° | 60.0° |
C2' | C1' | O4' | H4 | 118.8° | 118.6° |
C1' | C2' | C3' | H5 | 119.1° | 118.1° |
C1' | C2' | C3' | H6 | 119.1° | 118.3° |
C2' | C1' | O4' | C4' | 2.8° | 40.1° |
C1' | C2' | C3' | C4' | 29.4° | 20.9° |
C1' | C2' | C3' | O3' | 150.8° | 97.8° |
C1' | C2' | H5 | H6 | 122.4° | 123.8° |
C1' | C2' | C3' | H7 | 88.3° | 139.6° |
O4' | C1' | C2' | C3' | 20.2° | 37.1° |
C1' | O4' | C4' | C3' | 15.5° | 26.6° |
C1' | O4' | C4' | C5' | 135.6° | 145.9° |
C1' | O4' | C4' | C33 | 104.9° | 93.0° |
O4' | C1' | C2' | H5 | 99.0° | 155.2° |
O4' | C1' | C2' | H6 | 139.3° | 81.1° |
C2' | C3' | C4' | O4' | 28.9° | 2.1° |
C2' | C3' | C4' | O3' | 120.8° | 118.7° |
C2' | C3' | C4' | H7 | 118.0° | 118.7° |
C2' | C3' | O3' | H7 | 121.0° | 122.6° |
C2' | C3' | C4' | C5' | 149.5° | 121.4° |
C2' | C3' | C4' | C33 | 90.3° | 117.5° |
C3' | C2' | C1' | H4 | 139.0° | 81.7° |
C3' | C2' | H5 | H6 | 122.5° | 123.6° |
C2' | C3' | O3' | H8 | 130.5° | 61.4° |
PA | O5' | C5' | C4' | 139.4° | 180.0° |
PA | O5' | C5' | H10 | 19.3° | 60.0° |
PA | O5' | C5' | H11 | 100.5° | 59.9° |
O5' | PA | O1A | H15 | 119.2° | 60.0° |
O1A | PA | O5' | C5' | 41.4° | 64.9° |
O5' | C5' | C4' | O4' | 55.9° | 67.2° |
O5' | C5' | C4' | C3' | 62.8° | 175.0° |
O5' | C5' | C4' | H10 | 120.1° | 120.0° |
O5' | C5' | C4' | H11 | 120.1° | 120.1° |
O5' | C5' | C4' | C33 | 175.7° | 54.0° |
O5' | C5' | H10 | H11 | 119.8° | 120.0° |
O3B | PG | O1G | O2G | 122.2° | 120.0° |
PG | O3B | PB | O1B | 165.2° | 40.0° |
PG | O3B | PB | O2B | 51.9° | 80.0° |
O3B | PG | O2G | H12 | 123.1° | 60.0° |
O3B | PG | O1G | H13 | 118.5° | 180.0° |
PB | O3B | PG | O1G | 9.5° | 160.0° |
PB | O3B | PG | O2G | 133.2° | 80.0° |
O3B | PB | O1B | O2B | 118.3° | 120.0° |
O3B | PB | O2B | H14 | 119.8° | 60.0° |
O4' | C4' | C3' | C5' | 120.6° | 119.4° |
O4' | C4' | C3' | C33 | 119.2° | 119.6° |
O4' | C4' | C3' | O3' | 149.6° | 120.7° |
O4' | C4' | C5' | C33 | 119.7° | 121.2° |
O4' | C4' | C33 | C34 | 101.7° | 4.2° |
C4' | O4' | C1' | H4 | 121.6° | 78.5° |
O4' | C4' | C3' | H7 | 89.2° | 116.6° |
O4' | C4' | C5' | H10 | 176.0° | 172.8° |
O4' | C4' | C5' | H11 | 64.2° | 52.9° |
O1G | PG | O2G | H12 | 113.3° | 60.0° |
O2G | PG | O1G | H13 | 119.3° | 60.1° |
C4' | C3' | O3' | H7 | 121.0° | 122.6° |
C3' | C4' | C5' | C33 | 121.5° | 121.0° |
C3' | C4' | C33 | C34 | 140.0° | 113.7° |
C4' | C3' | C2' | H5 | 89.7° | 139.0° |
C4' | C3' | C2' | H6 | 148.6° | 97.4° |
C4' | C3' | O3' | H8 | 111.5° | 176.2° |
C3' | C4' | C5' | H10 | 57.3° | 55.0° |
C3' | C4' | C5' | H11 | 177.1° | 64.9° |
O3' | C3' | C4' | C5' | 89.8° | 119.9° |
O3' | C3' | C4' | C33 | 30.5° | 1.1° |
O3' | C3' | C2' | H5 | 31.7° | 20.4° |
O3' | C3' | C2' | H6 | 90.1° | 144.0° |
O1B | PB | O2B | H14 | 0.0° | 180.0° |
C5' | C4' | C33 | C34 | 19.1° | 125.3° |
C5' | C4' | C3' | H7 | 31.5° | 2.7° |
C4' | C5' | H10 | H11 | 119.7° | 120.0° |
C33 | C4' | C3' | H7 | 151.7° | 123.8° |
C4' | C33 | C34 | H9 | 133.2° | 146.5° |
C33 | C4' | C5' | H10 | 64.2° | 66.0° |
C33 | C4' | C5' | H11 | 55.6° | 174.1° |
H4 | C1' | C2' | H5 | 19.8° | 36.5° |
H4 | C1' | C2' | H6 | 101.9° | 160.2° |
H5 | C2' | C3' | H7 | 152.6° | 102.3° |
H6 | C2' | C3' | H7 | 30.9° | 21.3° |
H7 | C3' | O3' | H8 | 9.5° | 61.2° |