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SummaryGeometryRelated PDB entries

6DZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C04C03sing1.53Å1.52Å
C04N05sing1.47Å1.35Å
C03N02sing1.47Å1.36Å
N02C01sing1.47Å1.28Å
N02C25sing1.47Å1.36Å
C06N05sing1.47Å1.28Å
C06C07sing1.53Å1.52Å
N05C24sing1.47Å1.35Å
C24C25sing1.53Å1.52Å
N08C07sing1.46Å1.42Å
N08C09sing1.38Å1.42Å
C09N10doub1.32Å1.35ÅAromatic
C09N18sing1.34Å1.35ÅAromatic
N10C11sing1.34Å1.38ÅAromatic
N18C16doub1.32Å1.34ÅAromatic
C11N12doub1.32Å1.39ÅAromatic
C11N15sing1.37Å1.32ÅAromatic
N12C13sing1.34Å1.36ÅAromatic
C16N15sing1.36Å1.38ÅAromatic
C16N17sing1.37Å1.42Å
N15N14sing1.40Å1.37ÅAromatic
C13N14doub1.32Å1.34ÅAromatic
C13C19sing1.48Å1.51Å
C19C20doub1.36Å1.39ÅAromatic
C19O23sing1.35Å1.35ÅAromatic
C20C21sing1.41Å1.39ÅAromatic
O23C22sing1.34Å1.35ÅAromatic
C21C22doub1.35Å1.39ÅAromatic
C20H1sing1.08Å1.08Å
C21H2sing1.08Å1.08Å
C22H3sing1.08Å1.08Å
C24H4sing1.09Å1.10Å
C24H5sing1.09Å1.10Å
C01H6sing1.09Å1.10Å
C01H7sing1.09Å1.10Å
C01H8sing1.09Å1.10Å
C03H10sing1.09Å1.10Å
C03H11sing1.09Å1.10Å
C04H12sing1.09Å1.10Å
C04H13sing1.09Å1.10Å
C06H15sing1.09Å1.10Å
C06H16sing1.09Å1.10Å
C07H17sing1.09Å1.10Å
C07H18sing1.09Å1.10Å
N08H19sing0.97Å1.00Å
N17H20sing0.97Å1.00Å
N17H21sing0.97Å1.00Å
C25H22sing1.09Å1.10Å
C25H23sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C03C04N05111.1°109.4°
C04C03N02112.6°109.4°
C04C03H10108.7°109.5°
C04C03H11108.7°109.5°
C03C04H12109.1°109.5°
C03C04H13109.1°109.5°
C04N05C06110.5°111.0°
C04N05C24111.8°110.9°
N05C04H12109.1°109.5°
N05C04H13109.1°109.5°
C03N02C01109.4°111.0°
C03N02C25113.9°110.9°
N02C03H10108.7°109.4°
N02C03H11108.7°109.5°
C01N02C25109.5°111.0°
N02C01H6109.5°109.5°
N02C01H7109.4°109.4°
N02C01H8109.5°109.4°
N02C25C24112.9°109.4°
N02C25H22108.6°109.5°
N02C25H23108.6°109.5°
N05C06C07110.3°109.5°
C06N05C24110.9°111.0°
N05C06H15109.3°109.5°
N05C06H16109.3°109.5°
C06C07N08110.5°109.5°
C07C06H15109.3°109.5°
C07C06H16109.2°109.4°
C06C07H17109.2°109.5°
C06C07H18109.2°109.4°
N05C24C25111.4°109.4°
N05C24H4109.0°109.5°
N05C24H5109.0°109.5°
C25C24H4109.0°109.5°
C25C24H5109.0°109.5°
C24C25H22108.6°109.5°
C24C25H23108.6°109.5°
C07N08C09118.2°120.0°
N08C07H17109.2°109.5°
N08C07H18109.2°109.5°
C07N08H19107.3°120.0°
N08C09N10120.6°119.4°
N08C09N18118.9°119.4°
C09N08H19107.2°120.0°
N10C09N18120.5°121.2°
C09N10C11119.3°120.1°
C09N18C16120.3°120.6°
N10C11N12132.3°133.4°
N10C11N15119.9°119.1°
N18C16N15119.4°119.4°
N18C16N17120.5°120.3°
N12C11N15107.8°107.5°
C11N12C13107.1°109.6°
C11N15C16120.6°119.5°
C11N15N14108.9°106.6°
N12C13N14108.5°109.3°
N12C13C19127.0°125.3°
N15C16N17120.1°120.3°
C16N15N14130.4°133.9°
C16N17H20109.5°120.0°
C16N17H21109.5°120.0°
N15N14C13107.6°107.0°
N14C13C19124.5°125.4°
C13C19C20127.1°125.9°
C13C19O23124.8°125.9°
C20C19O23108.0°108.2°
C19C20C21106.8°106.7°
C19C20H1126.6°126.7°
C19O23C22109.9°109.4°
C20C21C22107.7°107.0°
C21C20H1126.6°126.6°
C20C21H2126.2°126.4°
O23C22C21107.5°108.7°
O23C22H3126.2°125.7°
C22C21H2126.1°126.5°
C21C22H3126.3°125.7°
H4C24H5109.4°109.5°
H6C01H7109.5°109.5°
H6C01H8109.5°109.5°
H7C01H8109.5°109.5°
H10C03H11109.4°109.4°
H12C04H13109.5°109.5°
H15C06H16109.4°109.4°
H17C07H18109.5°109.5°
H20N17H21109.5°120.0°
H22C25H23109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C03C04N05H12120.3°120.0°
C03C04N05H13120.2°119.9°
C04C03N02H10120.5°120.0°
C04C03N02H11120.5°120.1°
C04C03N02C01171.5°176.8°
C04C03N02C2548.6°59.3°
C03C04N05C06179.3°176.8°
C03C04N05C2456.8°59.3°
C04C03H10H11118.6°120.1°
C03C04H12H13119.2°120.0°
N05C04C03N0252.6°58.4°
C04N05C06C24124.5°123.8°
C04N05C06C07159.0°170.0°
C04N05C24C2556.1°59.3°
C04N05C24H4176.4°179.3°
C04N05C24H564.2°60.6°
N05C04C03H10173.1°61.6°
N05C04C03H1167.9°178.4°
N05C04H12H13119.3°120.1°
C04N05C06H1538.8°50.0°
C04N05C06H1680.9°70.0°
C03N02C01C25125.5°123.8°
C03N02C25C2447.9°59.3°
C03N02C01H6180.0°176.2°
C03N02C01H760.0°56.2°
C03N02C01H860.0°63.8°
N02C03H10H11118.5°120.0°
N02C03C04H12172.9°178.3°
N02C03C04H1367.6°61.6°
C03N02C25H22168.4°60.7°
C03N02C25H2372.7°179.3°
C01N02C25C24170.7°176.8°
N02C01H6H7120.0°120.0°
N02C01H6H8120.0°120.0°
N02C01H7H8120.0°119.9°
C01N02C03H1068.0°63.2°
C01N02C03H1151.0°56.7°
C01N02C25H2268.8°63.2°
C01N02C25H2350.2°56.8°
N02C25C24N0551.1°58.4°
N02C25C24H22120.5°120.0°
N02C25C24H23120.5°120.0°
N02C25C24H4171.4°178.4°
N02C25C24H569.2°61.6°
C25N02C01H654.5°60.0°
C25N02C01H7174.5°180.0°
C25N02C01H865.5°60.0°
C25N02C03H10169.1°60.7°
C25N02C03H1171.9°179.3°
N02C25H22H23118.5°120.0°
N05C06C07H15120.2°120.1°
N05C06C07H16120.1°120.0°
C06N05C24C25179.8°176.8°
N05C06C07N08178.6°180.0°
C06N05C24H459.9°56.8°
C06N05C24H559.5°63.3°
C06N05C04H1259.0°56.8°
C06N05C04H1360.5°63.3°
N05C06H15H16119.6°120.0°
N05C06C07H1758.4°59.9°
N05C06C07H1861.3°60.0°
C07C06N05C2476.6°66.1°
C06C07N08H17120.2°120.0°
C06C07N08H18120.2°119.9°
C06C07N08C09103.1°179.9°
C07C06H15H16119.6°119.9°
C06C07H17H18119.6°119.9°
C06C07N08H19135.7°0.0°
N05C24C25H4120.3°120.0°
N05C24C25H5120.3°119.9°
N05C24H4H5119.1°120.1°
C24N05C04H12177.0°179.3°
C24N05C04H1363.5°60.6°
C24N05C06H15163.3°173.8°
C24N05C06H1643.6°53.8°
N05C24C25H22171.6°61.6°
N05C24C25H2369.4°178.3°
C25C24H4H5119.1°120.0°
C24C25H22H23118.4°120.1°
C07N08C09H19121.3°180.0°
C07N08C09N10167.3°180.0°
C07N08C09N1812.6°0.1°
N08C07C06H1561.3°59.9°
N08C07C06H1658.4°60.0°
N08C07H17H18119.5°120.1°
N08C09N10N18179.9°179.9°
N08C09N10C11179.9°180.0°
N08C09N18C16180.0°179.9°
C09N08C07H1717.1°60.0°
C09N08C07H18136.7°60.0°
N10C09N18C160.1°0.1°
C09N10C11N12180.0°180.0°
C09N10C11N150.0°0.1°
N10C09N08H1946.1°0.1°
N18C09N10C110.1°0.1°
C09N18C16N150.0°0.0°
C09N18C16N17179.8°180.0°
N18C09N08H19133.9°179.9°
N10C11N12N15180.0°179.9°
N10C11N12C13179.8°179.9°
N10C11N15C160.1°0.1°
N10C11N15N14180.0°179.9°
N18C16N15C110.1°0.0°
N18C16N15N17179.8°180.0°
N18C16N15N14180.0°180.0°
N18C16N17H200.0°179.9°
N18C16N17H21120.0°0.1°
N12C11N15C16179.8°180.0°
N12C11N15N140.0°0.0°
C11N12C13N140.3°0.0°
C11N12C13C19179.3°179.9°
N15C11N12C130.2°0.0°
C11N15C16N14179.9°180.0°
C11N15C16N17180.0°180.0°
C11N15N14C130.2°0.0°
N12C13N14N150.4°0.0°
N12C13N14C19179.0°179.9°
N12C13C19C2020.1°0.0°
N12C13C19O23159.1°179.5°
C16N15N14C13179.6°180.0°
N15C16N17H20179.8°0.1°
N15C16N17H2160.2°180.0°
N17C16N15N140.2°0.0°
C16N17H20H21120.0°179.9°
N15N14C13C19179.4°180.0°
N14C13C19C20161.0°180.0°
N14C13C19O2319.7°0.4°
C13C19C20O23179.3°179.6°
C13C19C20C21179.6°180.0°
C13C19O23C22179.6°180.0°
C13C19C20H10.4°0.3°
C19C20C21H1180.0°179.7°
C20C19O23C220.2°0.4°
C19C20C21C220.1°0.3°
C19C20C21H2179.9°179.7°
O23C19C20C210.2°0.4°
C19O23C22C210.1°0.2°
O23C19C20H1179.8°179.9°
C19O23C22H3179.9°179.8°
C20C21C22O230.0°0.0°
C20C21C22H2180.0°180.0°
C20C21C22H3179.9°180.0°
O23C22C21H3180.0°180.0°
O23C22C21H2180.0°180.0°
C22C21C20H1179.9°179.9°
H1C20C21H20.1°0.0°
H2C21C22H30.0°0.0°
H4C24C25H2268.1°58.4°
H4C24C25H2350.9°61.7°
H5C24C25H2251.3°178.5°
H5C24C25H23170.3°58.4°
H6C01H7H8120.0°120.0°
H10C03C04H1266.6°58.4°
H10C03C04H1352.9°178.5°
H11C03C04H1252.4°61.6°
H11C03C04H13171.9°58.4°
H15C06C07H17178.6°180.0°
H15C06C07H1858.9°60.1°
H16C06C07H1761.7°60.0°
H16C06C07H18178.6°180.0°
H17C07N08H19104.2°120.0°
H18C07N08H1915.5°119.9°

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PDB entries from 2024-07-17

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