Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C16C15doub1.38Å1.39ÅAromatic
C16C17sing1.38Å1.39ÅAromatic
C15C14sing1.38Å1.41ÅAromatic
C10C09sing1.53Å1.52Å
C10C11sing1.53Å1.52Å
C09N08sing1.47Å1.54Å
C17C18doub1.38Å1.41ÅAromatic
C14C11sing1.51Å1.52Å
C14C19doub1.38Å1.41ÅAromatic
C11C12sing1.53Å1.57Å
C07N08sing1.47Å1.50Å
C07C06sing1.53Å1.53Å
N08C13sing1.47Å1.55Å
C18C19sing1.38Å1.40ÅAromatic
C12C13sing1.53Å1.53Å
C06N05sing1.47Å1.39Å
N05C04sing1.38Å1.36Å
C04N20doub1.32Å1.31ÅAromatic
C04N03sing1.34Å1.41ÅAromatic
N20C21sing1.34Å1.34ÅAromatic
N03C02doub1.32Å1.36ÅAromatic
C21N22doub1.32Å1.31ÅAromatic
C21N25sing1.37Å1.46ÅAromatic
N22C23sing1.34Å1.40ÅAromatic
C02N25sing1.37Å1.36ÅAromatic
C02N01sing1.37Å1.38Å
N25N24sing1.40Å1.34ÅAromatic
C23N24doub1.32Å1.35ÅAromatic
C23C26sing1.48Å1.41Å
C26C27doub1.36Å1.37ÅAromatic
C26O30sing1.35Å1.38ÅAromatic
C27C28sing1.41Å1.48ÅAromatic
O30C29sing1.34Å1.40ÅAromatic
C28C29doub1.35Å1.42ÅAromatic
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C13H3sing1.09Å1.10Å
C13H4sing1.09Å1.10Å
C15H5sing1.08Å1.08Å
C17H6sing1.08Å1.08Å
C18H7sing1.08Å1.08Å
C19H8sing1.08Å1.08Å
C16H9sing1.08Å1.08Å
C12H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C11H12sing1.09Å1.10Å
N01H13sing0.97Å1.00Å
N01H14sing0.97Å1.00Å
N05H15sing0.97Å1.00Å
C06H16sing1.09Å1.10Å
C06H17sing1.09Å1.10Å
C07H18sing1.09Å1.10Å
C07H19sing1.09Å1.10Å
C09H21sing1.09Å1.10Å
C09H22sing1.09Å1.10Å
C27H23sing1.08Å1.08Å
C28H24sing1.08Å1.08Å
C29H25sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C15C16C17120.7°120.0°
C16C15C14125.0°120.0°
C16C15H5117.5°120.0°
C15C16H9119.7°120.0°
C16C17C18116.8°120.0°
C16C17H6121.6°120.0°
C17C16H9119.6°120.0°
C15C14C11122.4°120.0°
C15C14C19112.9°120.0°
C14C15H5117.5°120.0°
C09C10C11115.8°109.3°
C10C09N08107.5°109.5°
C09C10H1107.9°109.5°
C09C10H2107.9°109.5°
C10C09H21110.0°109.4°
C10C09H22110.0°109.5°
C10C11C14115.5°109.5°
C10C11C12106.3°109.1°
C11C10H1107.9°109.5°
C11C10H2107.9°109.5°
C10C11H12106.4°109.5°
C09N08C07102.9°110.9°
C09N08C13108.1°111.2°
N08C09H21110.0°109.4°
N08C09H22109.9°109.5°
C17C18C19121.4°120.1°
C18C17H6121.6°120.0°
C17C18H7119.3°120.0°
C11C14C19124.7°120.0°
C14C11C12115.7°109.5°
C14C11H12106.4°109.6°
C14C19C18123.2°119.9°
C14C19H8118.4°120.0°
C11C12C13110.3°109.3°
C11C12H10109.2°109.5°
C11C12H11109.2°109.5°
C12C11H12105.9°109.6°
N08C07C06105.7°109.5°
C07N08C13107.3°111.0°
N08C07H18110.4°109.4°
N08C07H19110.4°109.5°
C07C06N05109.9°109.5°
C07C06H16109.4°109.5°
C07C06H17109.4°109.5°
C06C07H18110.4°109.5°
C06C07H19110.4°109.5°
N08C13C12111.2°109.5°
N08C13H3109.0°109.5°
N08C13H4109.1°109.5°
C19C18H7119.3°119.9°
C18C19H8118.4°120.1°
C12C13H3109.1°109.4°
C12C13H4109.0°109.4°
C13C12H10109.3°109.5°
C13C12H11109.3°109.5°
C06N05C04124.8°120.0°
C06N05H15105.5°120.0°
N05C06H16109.4°109.5°
N05C06H17109.4°109.4°
N05C04N20122.5°119.4°
N05C04N03114.6°119.4°
C04N05H15105.5°120.0°
N20C04N03122.9°121.2°
C04N20C21118.4°120.1°
C04N03C02119.6°120.7°
N20C21N22131.4°133.3°
N20C21N25121.5°119.2°
N03C02N25119.5°119.4°
N03C02N01121.2°120.4°
N22C21N25107.0°107.5°
C21N22C23106.3°109.7°
C21N25C02118.0°119.5°
C21N25N24109.2°106.6°
N22C23N24112.5°109.3°
N22C23C26123.9°125.4°
N25C02N01119.3°120.3°
C02N25N24132.7°133.9°
C02N01H13109.5°120.1°
C02N01H14109.5°120.0°
N25N24C23104.9°107.0°
N24C23C26123.6°125.3°
C23C26C27133.7°125.9°
C23C26O30116.8°125.9°
C27C26O30109.5°108.1°
C26C27C28108.0°106.8°
C26C27H23126.0°126.6°
C26O30C29109.4°109.4°
C27C28C29105.0°107.0°
C28C27H23126.0°126.6°
C27C28H24127.5°126.5°
O30C29C28108.1°108.7°
O30C29H25126.0°125.7°
C29C28H24127.5°126.5°
C28C29H25125.9°125.6°
H1C10H2109.4°109.6°
H3C13H4109.5°109.5°
H10C12H11109.5°109.5°
H13N01H14109.4°120.0°
H16C06H17109.5°109.4°
H18C07H19109.5°109.4°
H21C09H22109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C15C16C17H9180.0°180.0°
C16C15C14H5180.0°179.7°
C15C16C17C180.1°0.0°
C16C15C14C11178.5°179.7°
C16C15C14C191.7°0.3°
C15C16C17H6179.9°179.7°
C17C16C15C140.7°0.0°
C16C17C18H6180.0°179.7°
C16C17C18C190.6°0.3°
C17C16C15H5179.2°179.7°
C16C17C18H7179.4°179.8°
C15C14C11C1072.6°120.0°
C15C14C11C19176.5°180.0°
C15C14C11C12162.4°120.3°
C15C14C19C182.1°0.5°
C15C14C19H8177.9°180.0°
C14C15C16H9179.3°180.0°
C15C14C11H1245.2°0.1°
C09C10C11H1120.9°119.9°
C09C10C11H2120.9°119.9°
C10C09N08H21119.7°120.0°
C10C09N08H22119.7°120.0°
C09C10C11C14172.1°177.5°
C09C10C11C1258.2°57.7°
C10C09N08C07171.5°174.1°
C10C09N08C1358.2°61.8°
C09C10H1H2117.1°120.1°
C09C10C11H1254.3°62.3°
C10C09H21H22120.9°120.0°
C11C10C09N0860.9°59.2°
C10C11C14C12125.1°119.7°
C10C11C14H12117.7°120.1°
C10C11C14C19104.0°59.9°
C10C11C12H12112.9°119.9°
C10C11C12C1355.4°57.7°
C11C10H1H2117.1°120.1°
C10C11C12H10175.6°62.3°
C10C11C12H1164.7°177.6°
C11C10C09H21179.4°179.2°
C11C10C09H2258.8°60.8°
C09N08C07C13113.9°124.2°
C09N08C07C06167.4°65.8°
C09N08C13C1261.2°61.8°
N08C09C10H1178.2°60.7°
N08C09C10H260.0°179.1°
C09N08C13H3178.6°58.2°
C09N08C13H459.1°178.2°
C09N08C07H1848.0°174.2°
C09N08C07H1973.1°54.3°
N08C09H21H22120.9°120.0°
C17C18C19C141.7°0.5°
C17C18C19H7180.0°180.0°
C17C18C19H8178.3°180.0°
C18C17C16H9179.9°180.0°
C14C11C12H12117.5°120.2°
C11C14C19C18178.9°179.4°
C14C11C12C13174.9°177.6°
C14C11C10H151.1°57.6°
C14C11C10H267.0°62.5°
C11C14C15H51.4°0.0°
C11C14C19H81.1°0.0°
C14C11C12H1054.8°57.6°
C14C11C12H1164.9°62.5°
C19C14C11C1221.1°59.7°
C14C19C18H8180.0°179.4°
C19C14C15H5178.3°180.0°
C14C19C18H7178.3°179.5°
C19C14C11H12138.3°179.9°
C11C12C13N0860.3°59.2°
C11C12C13H10120.1°120.0°
C11C12C13H11120.1°120.0°
C12C11C10H1179.1°62.3°
C12C11C10H262.7°177.6°
C11C12C13H3179.5°60.8°
C11C12C13H460.0°179.2°
C11C12H10H11119.6°120.1°
N08C07C06H18119.4°119.9°
N08C07C06H19119.4°120.0°
C07N08C13C12171.5°174.2°
N08C07C06N05174.8°180.0°
C07N08C13H368.2°65.9°
C07N08C13H451.3°54.2°
N08C07C06H1654.8°60.0°
N08C07C06H1765.1°60.0°
N08C07H18H19121.7°119.9°
C07N08C09H2168.8°54.2°
C07N08C09H2251.8°65.8°
C06C07N08C1378.6°170.0°
C07C06N05H16120.0°120.0°
C07C06N05H17120.1°120.0°
C07C06N05C0485.6°180.0°
C07C06N05H15152.3°0.0°
C07C06H16H17119.8°120.0°
C06C07H18H19121.7°120.0°
N08C13C12H3120.2°120.0°
N08C13C12H4120.3°120.0°
N08C13H3H4119.2°120.0°
N08C13C12H10179.6°60.8°
N08C13C12H1159.8°179.1°
C13N08C07H18162.0°50.0°
C13N08C07H1940.8°70.0°
C13N08C09H21177.9°178.3°
C13N08C09H2261.5°58.3°
C19C18C17H6179.5°180.0°
C12C13H3H4119.2°120.0°
C13C12H10H11119.6°120.1°
C13C12C11H1257.4°62.3°
C06N05C04H15122.1°180.0°
C06N05C04N20177.4°180.0°
C06N05C04N030.9°0.1°
N05C06H16H17119.9°119.9°
N05C06C07H1865.8°60.0°
N05C06C07H1955.4°60.0°
N05C04N20N03178.2°179.9°
N05C04N20C21178.5°180.0°
N05C04N03C02179.1°179.7°
C04N05C06H1634.4°60.0°
C04N05C06H17154.3°60.0°
N20C04N03C020.7°0.1°
C04N20C21N22179.3°180.0°
C04N20C21N250.5°0.3°
N20C04N05H1555.3°0.0°
N03C04N20C210.3°0.2°
C04N03C02N251.3°0.2°
C04N03C02N01179.2°179.8°
N03C04N05H15123.0°179.8°
N20C21N22N25179.0°179.7°
N20C21N22C23179.9°179.7°
N20C21N25C021.0°0.2°
N20C21N25N24177.8°179.7°
N03C02N25C211.5°0.1°
N03C02N25N01179.5°180.0°
N03C02N25N24177.2°180.0°
N03C02N01H130.0°180.0°
N03C02N01H14120.0°0.0°
N22C21N25C02179.9°179.9°
N22C21N25N243.2°0.0°
C21N22C23N241.6°0.0°
C21N22C23C26178.6°179.9°
N25C21N22C230.9°0.0°
C21N25C02N24175.8°179.9°
C21N25C02N01179.1°180.0°
C21N25N24C234.0°0.0°
N22C23N24N253.6°0.0°
N22C23N24C26177.0°179.9°
N22C23C26C2718.8°0.1°
N22C23C26O30160.8°179.8°
C02N25N24C23180.0°179.9°
N25C02N01H13179.4°0.1°
N25C02N01H1459.5°180.0°
N01C02N25N243.3°0.1°
C02N01H13H14120.0°180.0°
N25N24C23C26179.4°179.9°
N24C23C26C27164.5°180.0°
N24C23C26O3015.8°0.3°
C23C26C27O30179.6°179.7°
C23C26C27C28178.3°180.0°
C23C26O30C29178.5°179.9°
C23C26C27H231.8°0.1°
C26C27C28H23180.0°180.0°
C27C26O30C291.2°0.4°
C26C27C28C291.1°0.0°
C26C27C28H24179.0°180.0°
O30C26C27C281.4°0.2°
C26O30C29C280.5°0.4°
O30C26C27H23178.6°179.8°
C26O30C29H25179.5°179.9°
C27C28C29O300.4°0.2°
C27C28C29H24180.0°180.0°
C27C28C29H25179.7°180.0°
O30C29C28H25180.0°179.8°
O30C29C28H24179.7°179.8°
C29C28C27H23178.9°180.0°
H1C10C11H1266.6°177.8°
H1C10C09H2158.5°59.3°
H1C10C09H2262.2°179.3°
H2C10C11H12175.3°57.7°
H2C10C09H2159.7°60.9°
H2C10C09H22179.7°59.1°
H3C13C12H1059.3°179.3°
H3C13C12H1160.4°59.2°
H4C13C12H1060.1°59.3°
H4C13C12H11179.9°60.8°
H5C15C16H90.8°0.3°
H6C17C18H70.5°0.1°
H6C17C16H90.1°0.3°
H7C18C19H81.7°0.1°
H10C12C11H1262.7°177.8°
H11C12C11H12177.6°57.7°
H15N05C06H1687.7°120.0°
H15N05C06H1732.2°120.0°
H16C06C07H18174.2°179.9°
H16C06C07H1964.6°60.1°
H17C06C07H1854.3°60.0°
H17C06C07H19175.5°180.0°
H23C27C28H241.1°0.0°
H24C28C29H250.3°0.0°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon