Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
F15C13sing1.40Å1.35Å
C13F14sing1.40Å1.35Å
C13O12sing1.43Å1.45Å
O12C11sing1.36Å1.44Å
C10C11doub1.36Å1.40ÅAromatic
C10C09sing1.41Å1.44ÅAromatic
C11C16sing1.40Å1.42ÅAromatic
C08C09doub1.41Å1.44ÅAromatic
C08C07sing1.36Å1.39ÅAromatic
C09C22sing1.42Å1.38ÅAromatic
O17C16sing1.36Å1.42Å
O17C18sing1.43Å1.41Å
C16C21doub1.36Å1.40ÅAromatic
C07C06doub1.39Å1.42ÅAromatic
C22C21sing1.41Å1.43ÅAromatic
C22C23doub1.40Å1.42ÅAromatic
F19C18sing1.40Å1.34Å
C18F20sing1.40Å1.35Å
C03C02sing1.53Å1.55Å
C06C23sing1.36Å1.40ÅAromatic
C06C04sing1.51Å1.56Å
C02C04sing1.53Å1.55Å
C02C01sing1.53Å1.57Å
C04C24sing1.51Å1.47Å
C04O05sing1.43Å1.38Å
N28C24sing1.34Å1.35ÅAromatic
N28N27doub1.29Å1.37ÅAromatic
C24C25doub1.35Å1.42ÅAromatic
N27N26sing1.29Å1.37ÅAromatic
C25N26sing1.35Å1.35ÅAromatic
C10H101sing1.08Å1.08Å
C13H131sing1.09Å1.10Å
C21H211sing1.08Å1.08Å
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C03H033sing1.09Å1.10Å
C03H031sing1.09Å1.10Å
C03H032sing1.09Å1.10Å
O05H051sing0.97Å0.95Å
C07H071sing1.08Å1.08Å
C08H081sing1.08Å1.08Å
C18H181sing1.09Å1.10Å
C23H231sing1.08Å1.08Å
C25H251sing1.08Å1.08Å
N26H261sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
F15C13F14109.0°109.4°
F15C13O12110.6°109.5°
F15C13H131109.7°109.5°
F14C13O12109.2°109.4°
F14C13H131109.9°109.5°
C13O12C11115.7°117.1°
O12C13H131108.4°109.5°
O12C11C10120.2°119.5°
O12C11C16119.4°119.6°
C11C10C09119.7°119.7°
C10C11C16120.4°120.8°
C11C10H101120.2°120.2°
C10C09C08119.9°121.1°
C10C09C22120.0°119.5°
C09C10H101120.2°120.2°
C11C16O17117.3°119.6°
C11C16C21119.3°120.8°
C09C08C07119.6°119.7°
C08C09C22120.1°119.4°
C09C08H081120.2°120.2°
C08C07C06120.1°121.0°
C08C07H071120.0°119.5°
C07C08H081120.2°120.2°
C09C22C21120.4°119.5°
C09C22C23120.4°119.4°
C16O17C18122.4°117.0°
O17C16C21123.3°119.6°
O17C18F19109.6°109.5°
O17C18F20115.5°109.4°
O17C18H181107.6°109.5°
C16C21C22120.2°119.7°
C16C21H211119.9°120.1°
C07C06C23120.1°121.0°
C07C06C04119.6°119.5°
C06C07H071119.9°119.6°
C21C22C23119.2°121.2°
C22C21H211119.9°120.1°
C22C23C06119.6°119.7°
C22C23H231120.2°120.2°
F19C18F20106.6°109.5°
F19C18H181108.8°109.5°
F20C18H181108.6°109.4°
C03C02C04110.0°109.5°
C03C02C01110.8°109.5°
C03C02H021108.6°109.5°
C02C03H033109.5°109.4°
C02C03H031109.5°109.5°
C02C03H032109.4°109.5°
C23C06C04120.2°119.5°
C06C23H231120.2°120.2°
C06C04C02113.0°109.5°
C06C04C24104.1°109.5°
C06C04O05110.7°109.5°
C04C02C01110.5°109.5°
C02C04C24111.0°109.5°
C02C04O05108.8°109.4°
C04C02H021108.5°109.4°
C02C01H013109.5°109.4°
C02C01H011109.5°109.5°
C02C01H012109.5°109.5°
C01C02H021108.3°109.5°
C24C04O05109.1°109.5°
C04C24N28128.3°126.7°
C04C24C25124.5°126.7°
C04O05H051109.5°114.0°
C24N28N27108.4°108.9°
N28C24C25107.2°106.5°
N28N27N26108.4°110.2°
C24C25N26107.6°106.2°
C24C25H251126.2°126.9°
N27N26C25108.4°108.3°
N27N26H261125.8°125.9°
N26C25H251126.2°126.9°
C25N26H261125.8°125.9°
H013C01H011109.5°109.4°
H013C01H012109.4°109.5°
H011C01H012109.4°109.5°
H033C03H031109.5°109.5°
H033C03H032109.5°109.4°
H031C03H032109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
F15C13F14O12120.9°119.9°
F15C13F14H131120.3°120.1°
F15C13O12H131120.4°120.1°
F15C13O12C1172.4°59.9°
F14C13O12H131119.7°120.0°
F14C13O12C1147.5°60.0°
C13O12C11C1078.1°0.0°
C13O12C11C16103.6°180.0°
O12C11C10C16178.3°180.0°
O12C11C10C09179.2°180.0°
O12C11C16O172.3°0.0°
O12C11C16C21179.9°179.9°
O12C11C10H1010.8°0.3°
C11O12C13H131167.2°180.0°
C11C10C09H101180.0°179.8°
C11C10C09C08179.6°180.0°
C11C10C09C220.3°0.0°
C10C11C16O17179.3°180.0°
C10C11C16C211.6°0.0°
C09C10C11C160.9°0.0°
C10C09C08C22179.8°180.0°
C10C09C08C07179.7°180.0°
C10C09C22C210.4°0.0°
C10C09C22C23180.0°179.9°
C10C09C08H0810.3°0.0°
C11C16O17C21177.6°180.0°
C11C16O17C18144.8°180.0°
C11C16C21C221.7°0.0°
C16C11C10H101179.1°179.8°
C11C16C21H211178.3°180.0°
C09C08C07H081180.0°180.0°
C09C08C07C061.1°0.2°
C08C09C22C21179.5°180.0°
C08C09C22C230.1°0.1°
C08C09C10H1010.4°0.2°
C09C08C07H071178.9°180.0°
C07C08C09C220.4°0.0°
C08C07C06H071180.0°179.8°
C08C07C06C231.5°0.2°
C08C07C06C04179.0°179.9°
C09C22C21C161.1°0.0°
C09C22C21C23179.6°179.9°
C09C22C23C060.5°0.1°
C22C09C10H101179.7°179.8°
C09C22C21H211178.9°180.0°
C22C09C08H081179.6°180.0°
C09C22C23H231179.5°180.0°
O17C16C21C22179.3°180.0°
C16O17C18F19119.9°60.0°
C16O17C18F200.5°60.1°
O17C16C21H2110.7°0.0°
C16O17C18H181122.0°180.0°
C18O17C16C2137.5°0.0°
O17C18F19F20125.6°120.0°
O17C18F19H181117.4°120.0°
O17C18F20H181121.0°120.0°
C16C21C22H211180.0°179.9°
C16C21C22C23179.3°179.9°
C07C06C23C221.2°0.1°
C07C06C23C04177.5°179.9°
C07C06C04C0257.6°55.9°
C07C06C04C2462.9°64.1°
C07C06C04O05179.9°175.9°
C06C07C08H081178.9°179.9°
C07C06C23H231178.9°179.9°
C21C22C23C06179.1°180.0°
C21C22C23H2310.9°0.1°
C22C23C06H231180.0°180.0°
C22C23C06C04178.7°179.9°
C23C22C21H2110.7°0.1°
F19C18F20H181117.1°120.0°
C03C02C04C0657.6°54.3°
C03C02C04C01122.7°120.0°
C03C02C04H021118.7°120.0°
C03C02C01H021119.0°120.0°
C03C02C04C24174.2°174.4°
C03C02C04O0565.8°65.6°
C03C02C01H013180.0°65.1°
C03C02C01H01160.0°54.8°
C03C02C01H01260.0°174.9°
C02C03H033H031120.0°120.0°
C02C03H033H032120.0°120.0°
C02C03H031H032120.0°120.0°
C23C06C04C02124.9°123.9°
C23C06C04C24114.6°116.0°
C23C06C04O052.6°4.0°
C23C06C07H071178.5°180.0°
C06C04C02C24116.6°120.0°
C06C04C02O05123.3°120.0°
C06C04C02C01179.7°174.4°
C06C04C24O05118.2°120.0°
C06C04C24N28110.7°115.4°
C06C04C24C2567.6°65.0°
C06C04C02H02161.1°65.7°
C06C04O05H051180.0°60.0°
C04C06C07H0711.0°0.1°
C04C06C23H2311.4°0.0°
C04C02C01H021118.7°119.9°
C02C04C24O05119.9°120.0°
C02C04C24N2811.2°4.7°
C02C04C24C25170.4°175.0°
C04C02C01H01357.8°55.0°
C04C02C01H01162.3°174.9°
C04C02C01H012177.8°65.0°
C04C02C03H033180.0°60.0°
C04C02C03H03160.0°180.0°
C04C02C03H03260.0°60.0°
C02C04O05H05155.3°179.9°
C01C02C04C2463.2°65.6°
C01C02C04O0556.9°54.4°
C02C01H013H011120.0°120.0°
C02C01H013H012120.0°120.1°
C02C01H011H012120.0°120.1°
C01C02C03H03357.5°180.0°
C01C02C03H03162.5°60.0°
C01C02C03H032177.5°60.1°
C04C24N28C25178.6°179.7°
C04C24N28N27179.4°179.8°
C04C24C25N26179.6°180.0°
C24C04C02H02155.5°54.4°
C24C04O05H05166.0°60.0°
C04C24C25H2510.4°0.0°
O05C04C24N28131.1°124.7°
O05C04C24C2550.6°55.0°
O05C04C02H021175.5°174.4°
C24N28N27N260.4°0.5°
N28C24C25N260.9°0.3°
N28C24C25H251179.1°179.7°
N27N28C24C250.8°0.5°
N28N27N26C250.2°0.3°
N28N27N26H261179.8°179.7°
C24C25N26N270.7°0.0°
C24C25N26H251180.0°180.0°
C24C25N26H261179.3°180.0°
N27N26C25H261180.0°180.0°
N27N26C25H251179.4°180.0°
H013C01H011H012120.0°120.0°
H013C01C02H02161.0°174.9°
H011C01C02H021179.0°65.2°
H012C01C02H02159.0°54.9°
H021C02C03H03361.3°60.0°
H021C02C03H031178.7°60.0°
H021C02C03H03258.7°179.9°
H033C03H031H032120.0°120.0°
H071C07C08H0811.1°0.0°
H251C25N26H2610.7°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon