6C6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C2 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.33Å | Aromatic |
| O2' | C2' | sing | 1.43Å | 1.45Å | |
| N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.35Å | Aromatic |
| O3' | C3' | sing | 1.43Å | 1.45Å | |
| C2' | C3' | sing | 1.54Å | 1.53Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C3' | C4' | sing | 1.54Å | 1.54Å | |
| C6 | N6 | sing | 1.38Å | 1.35Å | |
| C6 | C5 | doub | 1.40Å | 1.39Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.39Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.33Å | Aromatic |
| N6 | C61 | sing | 1.47Å | 1.48Å | |
| C63 | C62 | sing | 1.55Å | 1.53Å | |
| C63 | C64 | sing | 1.54Å | 1.53Å | |
| C5 | N7 | sing | 1.35Å | 1.33Å | Aromatic |
| C1' | N9 | sing | 1.46Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.45Å | |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| C62 | C61 | sing | 1.55Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C64 | C65 | sing | 1.54Å | 1.54Å | |
| C61 | C65 | sing | 1.54Å | 1.54Å | |
| N7 | C8 | doub | 1.30Å | 1.33Å | Aromatic |
| C5' | O5' | sing | 1.43Å | 1.40Å | |
| O5' | PA | sing | 1.61Å | 1.64Å | |
| OA3 | PA | doub | 1.48Å | 1.58Å | |
| OA1 | PA | sing | 1.61Å | 1.50Å | |
| PA | OA2 | sing | 1.61Å | 1.56Å | |
| C65 | H1 | sing | 1.09Å | 1.10Å | |
| C65 | H2 | sing | 1.09Å | 1.10Å | |
| C64 | H3 | sing | 1.09Å | 1.10Å | |
| C64 | H4 | sing | 1.09Å | 1.10Å | |
| C63 | H5 | sing | 1.09Å | 1.10Å | |
| C63 | H6 | sing | 1.09Å | 1.10Å | |
| C62 | H7 | sing | 1.09Å | 1.10Å | |
| C62 | H8 | sing | 1.09Å | 1.10Å | |
| C61 | H9 | sing | 1.09Å | 1.10Å | |
| N6 | H10 | sing | 0.97Å | 1.00Å | |
| C2 | H11 | sing | 1.08Å | 1.08Å | |
| C8 | H12 | sing | 1.08Å | 1.08Å | |
| C1' | H13 | sing | 1.09Å | 1.10Å | |
| C2' | H14 | sing | 1.09Å | 1.10Å | |
| O2' | H15 | sing | 0.97Å | 0.95Å | |
| C3' | H16 | sing | 1.09Å | 1.10Å | |
| O3' | H17 | sing | 0.97Å | 0.95Å | |
| C4' | H18 | sing | 1.09Å | 1.10Å | |
| C5' | H19 | sing | 1.09Å | 1.10Å | |
| C5' | H20 | sing | 1.09Å | 1.10Å | |
| OA2 | H21 | sing | 0.97Å | 0.95Å | |
| OA1 | H22 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N1 | C2 | N3 | 121.3° | 122.5° |
| C2 | N1 | C6 | 122.0° | 121.2° |
| N1 | C2 | H11 | 119.3° | 118.8° |
| C2 | N3 | C4 | 119.9° | 120.6° |
| N3 | C2 | H11 | 119.3° | 118.8° |
| O2' | C2' | C3' | 112.2° | 110.5° |
| O2' | C2' | C1' | 111.0° | 110.5° |
| O2' | C2' | H14 | 110.1° | 110.6° |
| C2' | O2' | H15 | 109.5° | 114.0° |
| N1 | C6 | N6 | 118.0° | 120.8° |
| N1 | C6 | C5 | 118.0° | 118.4° |
| N3 | C4 | C5 | 120.3° | 119.1° |
| N3 | C4 | N9 | 132.1° | 134.9° |
| O3' | C3' | C2' | 112.5° | 110.5° |
| O3' | C3' | C4' | 109.3° | 110.5° |
| O3' | C3' | H16 | 110.5° | 110.5° |
| C3' | O3' | H17 | 109.5° | 114.1° |
| C3' | C2' | C1' | 105.6° | 104.1° |
| C2' | C3' | C4' | 105.8° | 104.1° |
| C3' | C2' | H14 | 108.9° | 110.5° |
| C2' | C3' | H16 | 109.3° | 110.5° |
| C2' | C1' | N9 | 108.8° | 110.3° |
| C2' | C1' | O4' | 107.4° | 104.8° |
| C2' | C1' | H13 | 108.6° | 110.5° |
| C1' | C2' | H14 | 108.8° | 110.5° |
| C3' | C4' | O4' | 108.2° | 104.8° |
| C3' | C4' | C5' | 108.5° | 110.4° |
| C4' | C3' | H16 | 109.3° | 110.5° |
| C3' | C4' | H18 | 109.5° | 110.4° |
| N6 | C6 | C5 | 124.0° | 120.8° |
| C6 | N6 | C61 | 126.0° | 120.0° |
| C6 | N6 | H10 | 105.2° | 120.0° |
| C6 | C5 | C4 | 118.4° | 118.2° |
| C6 | C5 | N7 | 134.6° | 134.7° |
| C5 | C4 | N9 | 107.6° | 106.0° |
| C4 | C5 | N7 | 107.0° | 107.1° |
| C4 | N9 | C1' | 124.8° | 126.3° |
| C4 | N9 | C8 | 107.6° | 107.4° |
| N6 | C61 | C62 | 110.5° | 110.5° |
| N6 | C61 | C65 | 108.5° | 110.5° |
| N6 | C61 | H9 | 111.6° | 110.5° |
| C61 | N6 | H10 | 105.2° | 120.0° |
| C62 | C63 | C64 | 104.3° | 104.2° |
| C63 | C62 | C61 | 105.0° | 102.7° |
| C62 | C63 | H5 | 110.7° | 110.5° |
| C62 | C63 | H6 | 110.8° | 110.4° |
| C63 | C62 | H7 | 110.6° | 110.8° |
| C63 | C62 | H8 | 110.6° | 110.8° |
| C63 | C64 | C65 | 106.3° | 106.6° |
| C63 | C64 | H3 | 110.3° | 110.0° |
| C63 | C64 | H4 | 110.3° | 110.1° |
| C64 | C63 | H5 | 110.7° | 110.5° |
| C64 | C63 | H6 | 110.8° | 110.5° |
| C5 | N7 | C8 | 108.3° | 109.5° |
| N9 | C1' | O4' | 112.9° | 110.3° |
| C1' | N9 | C8 | 127.6° | 126.3° |
| N9 | C1' | H13 | 109.2° | 110.3° |
| C1' | O4' | C4' | 109.6° | 105.2° |
| O4' | C1' | H13 | 109.9° | 110.4° |
| N9 | C8 | N7 | 109.5° | 110.0° |
| N9 | C8 | H12 | 125.3° | 125.0° |
| C62 | C61 | C65 | 104.6° | 104.2° |
| C61 | C62 | H7 | 110.6° | 110.7° |
| C61 | C62 | H8 | 110.6° | 110.8° |
| C62 | C61 | H9 | 110.8° | 110.5° |
| O4' | C4' | C5' | 110.5° | 110.3° |
| O4' | C4' | H18 | 110.7° | 110.4° |
| C4' | C5' | O5' | 111.8° | 109.4° |
| C5' | C4' | H18 | 109.5° | 110.4° |
| C4' | C5' | H19 | 108.9° | 109.4° |
| C4' | C5' | H20 | 108.9° | 109.4° |
| C64 | C65 | C61 | 107.5° | 106.6° |
| C64 | C65 | H1 | 110.0° | 110.0° |
| C64 | C65 | H2 | 110.0° | 110.0° |
| C65 | C64 | H3 | 110.3° | 110.0° |
| C65 | C64 | H4 | 110.3° | 110.0° |
| C61 | C65 | H1 | 110.0° | 110.1° |
| C61 | C65 | H2 | 110.0° | 110.0° |
| C65 | C61 | H9 | 110.7° | 110.5° |
| N7 | C8 | H12 | 125.3° | 125.0° |
| C5' | O5' | PA | 121.5° | 122.9° |
| O5' | C5' | H19 | 108.9° | 109.5° |
| O5' | C5' | H20 | 108.9° | 109.5° |
| O5' | PA | OA3 | 104.0° | 109.5° |
| O5' | PA | OA1 | 109.7° | 109.4° |
| O5' | PA | OA2 | 104.7° | 109.5° |
| OA3 | PA | OA1 | 115.3° | 109.5° |
| OA3 | PA | OA2 | 108.7° | 109.5° |
| OA1 | PA | OA2 | 113.5° | 109.4° |
| PA | OA1 | H22 | 109.5° | 114.0° |
| PA | OA2 | H21 | 109.5° | 114.1° |
| H1 | C65 | H2 | 109.5° | 110.1° |
| H3 | C64 | H4 | 109.4° | 110.0° |
| H5 | C63 | H6 | 109.5° | 110.5° |
| H7 | C62 | H8 | 109.5° | 110.8° |
| H19 | C5' | H20 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C2 | N3 | H11 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.6° | 0.0° |
| C2 | N1 | C6 | N6 | 180.0° | 180.0° |
| C2 | N1 | C6 | C5 | 0.8° | 0.3° |
| N3 | C2 | N1 | C6 | 0.8° | 0.0° |
| C2 | N3 | C4 | C5 | 0.5° | 0.3° |
| C2 | N3 | C4 | N9 | 179.9° | 180.0° |
| O2' | C2' | C3' | O3' | 4.2° | 0.0° |
| O2' | C2' | C3' | C1' | 121.1° | 118.6° |
| O2' | C2' | C3' | H14 | 122.2° | 122.7° |
| O2' | C2' | C1' | H14 | 121.3° | 122.7° |
| O2' | C2' | C3' | C4' | 115.0° | 118.6° |
| O2' | C2' | C1' | N9 | 131.2° | 98.5° |
| O2' | C2' | C1' | O4' | 106.3° | 142.7° |
| O2' | C2' | C1' | H13 | 12.4° | 23.7° |
| O2' | C2' | C3' | H16 | 127.4° | 122.7° |
| N1 | C6 | N6 | C5 | 179.2° | 179.7° |
| N1 | C6 | C5 | C4 | 0.6° | 0.6° |
| N1 | C6 | N6 | C61 | 176.7° | 0.3° |
| N1 | C6 | C5 | N7 | 179.7° | 179.8° |
| N1 | C6 | N6 | H10 | 61.1° | 179.7° |
| C6 | N1 | C2 | H11 | 179.2° | 180.0° |
| N3 | C4 | C5 | C6 | 0.5° | 0.6° |
| N3 | C4 | C5 | N9 | 179.7° | 179.8° |
| N3 | C4 | C5 | N7 | 179.8° | 179.7° |
| N3 | C4 | N9 | C1' | 0.9° | 0.0° |
| N3 | C4 | N9 | C8 | 179.7° | 179.3° |
| C4 | N3 | C2 | H11 | 179.4° | 180.0° |
| O3' | C3' | C2' | C4' | 119.2° | 118.7° |
| O3' | C3' | C2' | H16 | 123.2° | 122.7° |
| O3' | C3' | C2' | C1' | 125.3° | 118.6° |
| O3' | C3' | C4' | H16 | 121.1° | 122.7° |
| O3' | C3' | C4' | O4' | 116.0° | 142.7° |
| O3' | C3' | C4' | C5' | 124.1° | 98.5° |
| O3' | C3' | C2' | H14 | 117.9° | 122.7° |
| O3' | C3' | C4' | H18 | 4.7° | 23.8° |
| C3' | C2' | C1' | H14 | 116.8° | 118.7° |
| C2' | C3' | C4' | H16 | 117.6° | 118.7° |
| C3' | C2' | C1' | N9 | 107.0° | 142.8° |
| C3' | C2' | C1' | O4' | 15.6° | 24.0° |
| C2' | C3' | C4' | O4' | 5.3° | 24.0° |
| C2' | C3' | C4' | C5' | 114.6° | 142.8° |
| C3' | C2' | C1' | H13 | 134.3° | 94.9° |
| C3' | C2' | O2' | H15 | 180.0° | 61.4° |
| C2' | C3' | O3' | H17 | 180.0° | 61.4° |
| C2' | C3' | C4' | H18 | 126.0° | 94.9° |
| C1' | C2' | C3' | C4' | 6.1° | 0.0° |
| C2' | C1' | N9 | C4 | 60.5° | 88.2° |
| C2' | C1' | N9 | O4' | 119.1° | 115.4° |
| C2' | C1' | N9 | H13 | 118.4° | 122.4° |
| C2' | C1' | O4' | H13 | 117.9° | 119.0° |
| C2' | C1' | N9 | C8 | 118.8° | 91.0° |
| C2' | C1' | O4' | C4' | 19.6° | 40.5° |
| C1' | C2' | O2' | H15 | 62.1° | 176.1° |
| C1' | C2' | C3' | H16 | 111.5° | 118.7° |
| C3' | C4' | O4' | C1' | 15.7° | 40.5° |
| C3' | C4' | O4' | C5' | 118.6° | 118.8° |
| C3' | C4' | O4' | H18 | 119.9° | 118.9° |
| C3' | C4' | C5' | H18 | 119.4° | 122.3° |
| C3' | C4' | C5' | O5' | 171.8° | 175.0° |
| C4' | C3' | C2' | H14 | 122.9° | 118.6° |
| C4' | C3' | O3' | H17 | 62.9° | 176.1° |
| C3' | C4' | C5' | H19 | 67.9° | 55.0° |
| C3' | C4' | C5' | H20 | 51.4° | 65.0° |
| N6 | C6 | C5 | C4 | 179.8° | 179.7° |
| C6 | N6 | C61 | H10 | 122.2° | 180.0° |
| N6 | C6 | C5 | N7 | 0.5° | 0.1° |
| C6 | N6 | C61 | C62 | 89.8° | 155.0° |
| C6 | N6 | C61 | C65 | 156.1° | 90.2° |
| C6 | N6 | C61 | H9 | 34.0° | 32.4° |
| C6 | C5 | C4 | N7 | 179.7° | 179.7° |
| C6 | C5 | C4 | N9 | 179.8° | 179.6° |
| C5 | C6 | N6 | C61 | 2.5° | 180.0° |
| C6 | C5 | N7 | C8 | 179.7° | 179.9° |
| C5 | C6 | N6 | H10 | 119.7° | 0.0° |
| C5 | C4 | N9 | C1' | 179.5° | 179.7° |
| C5 | C4 | N9 | C8 | 0.1° | 0.4° |
| C4 | C5 | N7 | C8 | 0.1° | 0.3° |
| N9 | C4 | C5 | N7 | 0.1° | 0.1° |
| C4 | N9 | C1' | C8 | 179.3° | 179.2° |
| C4 | N9 | C1' | O4' | 179.6° | 156.4° |
| C4 | N9 | C8 | N7 | 0.0° | 0.6° |
| C4 | N9 | C8 | H12 | 180.0° | 179.9° |
| C4 | N9 | C1' | H13 | 57.9° | 34.2° |
| N6 | C61 | C62 | C63 | 85.2° | 156.6° |
| N6 | C61 | C62 | C65 | 116.5° | 118.8° |
| N6 | C61 | C62 | H9 | 124.2° | 122.6° |
| N6 | C61 | C65 | C64 | 102.7° | 142.3° |
| N6 | C61 | C65 | H9 | 122.8° | 122.6° |
| N6 | C61 | C65 | H1 | 137.6° | 98.4° |
| N6 | C61 | C65 | H2 | 17.0° | 23.0° |
| N6 | C61 | C62 | H7 | 34.1° | 38.3° |
| N6 | C61 | C62 | H8 | 155.5° | 85.0° |
| C62 | C63 | C64 | H5 | 119.1° | 118.7° |
| C62 | C63 | C64 | H6 | 119.2° | 118.7° |
| C63 | C62 | C61 | H7 | 119.3° | 118.3° |
| C63 | C62 | C61 | H8 | 119.3° | 118.4° |
| C62 | C63 | C64 | C65 | 25.9° | 23.6° |
| C63 | C62 | C61 | C65 | 31.4° | 37.9° |
| C62 | C63 | C64 | H3 | 93.6° | 95.7° |
| C62 | C63 | C64 | H4 | 145.4° | 142.9° |
| C62 | C63 | H5 | H6 | 122.4° | 122.5° |
| C63 | C62 | H7 | H8 | 122.1° | 123.4° |
| C63 | C62 | C61 | H9 | 150.6° | 80.8° |
| C64 | C63 | C62 | C61 | 35.7° | 37.9° |
| C63 | C64 | C65 | H3 | 119.5° | 119.3° |
| C63 | C64 | C65 | H4 | 119.5° | 119.4° |
| C63 | C64 | C65 | C61 | 6.6° | 0.0° |
| C63 | C64 | C65 | H1 | 126.3° | 119.3° |
| C63 | C64 | C65 | H2 | 113.1° | 119.3° |
| C63 | C64 | H3 | H4 | 121.5° | 121.4° |
| C64 | C63 | H5 | H6 | 122.4° | 122.7° |
| C64 | C63 | C62 | H7 | 154.9° | 80.3° |
| C64 | C63 | C62 | H8 | 83.7° | 156.3° |
| C5 | N7 | C8 | N9 | 0.0° | 0.5° |
| C5 | N7 | C8 | H12 | 180.0° | 179.9° |
| N9 | C1' | O4' | H13 | 122.2° | 122.2° |
| N9 | C1' | O4' | C4' | 100.3° | 159.3° |
| C1' | N9 | C8 | N7 | 179.4° | 179.9° |
| C1' | N9 | C8 | H12 | 0.6° | 0.6° |
| N9 | C1' | C2' | H14 | 9.8° | 24.2° |
| O4' | C1' | N9 | C8 | 0.3° | 24.4° |
| C1' | O4' | C4' | C5' | 103.0° | 159.4° |
| O4' | C1' | C2' | H14 | 132.4° | 94.6° |
| C1' | O4' | C4' | H18 | 135.6° | 78.3° |
| N9 | C8 | N7 | H12 | 180.0° | 179.5° |
| C8 | N9 | C1' | H13 | 122.8° | 146.6° |
| C62 | C61 | C65 | C64 | 15.2° | 23.5° |
| C62 | C61 | C65 | H9 | 119.3° | 118.7° |
| C62 | C61 | C65 | H1 | 104.5° | 142.8° |
| C62 | C61 | C65 | H2 | 134.9° | 95.7° |
| C61 | C62 | C63 | H5 | 154.8° | 156.6° |
| C61 | C62 | C63 | H6 | 83.5° | 80.8° |
| C61 | C62 | H7 | H8 | 122.1° | 123.3° |
| C62 | C61 | N6 | H10 | 32.4° | 25.0° |
| O4' | C4' | C5' | H18 | 122.1° | 122.3° |
| O4' | C4' | C5' | O5' | 53.3° | 69.6° |
| C4' | O4' | C1' | H13 | 137.5° | 78.4° |
| O4' | C4' | C3' | H16 | 122.9° | 94.7° |
| O4' | C4' | C5' | H19 | 173.7° | 170.4° |
| O4' | C4' | C5' | H20 | 67.0° | 50.4° |
| C4' | C5' | O5' | H19 | 120.4° | 120.0° |
| C4' | C5' | O5' | H20 | 120.4° | 120.0° |
| C4' | C5' | O5' | PA | 176.6° | 180.0° |
| C5' | C4' | C3' | H16 | 3.0° | 24.1° |
| C4' | C5' | H19 | H20 | 118.9° | 120.0° |
| C64 | C65 | C61 | H1 | 119.7° | 119.3° |
| C64 | C65 | C61 | H2 | 119.7° | 119.2° |
| C64 | C65 | H1 | H2 | 120.9° | 121.4° |
| C65 | C64 | H3 | H4 | 121.5° | 121.4° |
| C65 | C64 | C63 | H5 | 145.0° | 142.3° |
| C65 | C64 | C63 | H6 | 93.3° | 95.0° |
| C64 | C65 | C61 | H9 | 134.5° | 95.1° |
| C61 | C65 | H1 | H2 | 120.9° | 121.4° |
| C61 | C65 | C64 | H3 | 112.9° | 119.2° |
| C61 | C65 | C64 | H4 | 126.1° | 119.4° |
| C65 | C61 | C62 | H7 | 150.7° | 80.4° |
| C65 | C61 | C62 | H8 | 87.9° | 156.3° |
| C65 | C61 | N6 | H10 | 81.6° | 89.8° |
| C5' | O5' | PA | OA3 | 69.0° | 55.0° |
| C5' | O5' | PA | OA1 | 54.8° | 175.0° |
| C5' | O5' | PA | OA2 | 177.0° | 65.1° |
| O5' | C5' | C4' | H18 | 68.8° | 52.7° |
| O5' | C5' | H19 | H20 | 118.9° | 120.1° |
| O5' | PA | OA3 | OA1 | 120.1° | 120.0° |
| O5' | PA | OA3 | OA2 | 111.1° | 120.0° |
| O5' | PA | OA1 | OA2 | 116.7° | 119.9° |
| PA | O5' | C5' | H19 | 63.0° | 60.1° |
| PA | O5' | C5' | H20 | 56.3° | 60.0° |
| O5' | PA | OA2 | H21 | 110.7° | 60.0° |
| O5' | PA | OA1 | H22 | 117.0° | 179.9° |
| OA3 | PA | OA1 | OA2 | 126.3° | 120.0° |
| OA3 | PA | OA2 | H21 | 0.0° | 180.0° |
| OA3 | PA | OA1 | H22 | 0.0° | 60.0° |
| OA1 | PA | OA2 | H21 | 129.7° | 60.0° |
| OA2 | PA | OA1 | H22 | 126.3° | 60.0° |
| H1 | C65 | C64 | H3 | 6.8° | 121.4° |
| H1 | C65 | C64 | H4 | 114.2° | 0.1° |
| H1 | C65 | C61 | H9 | 14.9° | 24.2° |
| H2 | C65 | C64 | H3 | 127.4° | 0.0° |
| H2 | C65 | C64 | H4 | 6.4° | 121.3° |
| H2 | C65 | C61 | H9 | 105.8° | 145.6° |
| H3 | C64 | C63 | H5 | 25.5° | 23.0° |
| H3 | C64 | C63 | H6 | 147.2° | 145.7° |
| H4 | C64 | C63 | H5 | 95.4° | 98.4° |
| H4 | C64 | C63 | H6 | 26.2° | 24.3° |
| H5 | C63 | C62 | H7 | 85.9° | 38.4° |
| H5 | C63 | C62 | H8 | 35.5° | 85.0° |
| H6 | C63 | C62 | H7 | 35.8° | 161.0° |
| H6 | C63 | C62 | H8 | 157.2° | 37.6° |
| H7 | C62 | C61 | H9 | 90.1° | 160.9° |
| H8 | C62 | C61 | H9 | 31.3° | 37.6° |
| H9 | C61 | N6 | H10 | 156.2° | 147.6° |
| H13 | C1' | C2' | H14 | 108.9° | 146.4° |
| H14 | C2' | O2' | H15 | 58.5° | 61.2° |
| H14 | C2' | C3' | H16 | 5.3° | 0.0° |
| H16 | C3' | O3' | H17 | 57.5° | 61.3° |
| H16 | C3' | C4' | H18 | 116.4° | 146.4° |
| H18 | C4' | C5' | H19 | 51.5° | 67.3° |
| H18 | C4' | C5' | H20 | 170.8° | 172.7° |
