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Summary Geometry Related PDB entries

6B6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	PT1	sing	2.00Å	2.10Å
PT1	O2	sing	2.00Å	2.28Å
PT1	O1	sing	2.00Å	2.03Å
PT1	O4	sing	2.00Å	16.61Å
O3	H1	sing	0.97Å	0.95Å
O4	H2	sing	0.97Å	0.00Å
O2	H4	sing	0.97Å	0.95Å
O1	H3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	PT1	O2	177.1°	109.5°
O3	PT1	O1	89.4°	109.5°
O3	PT1	O4	108.4°	109.5°
PT1	O3	H1	109.5°	114.0°
O2	PT1	O1	92.2°	109.5°
O2	PT1	O4	73.0°	109.5°
PT1	O2	H4	109.5°	114.0°
O1	PT1	O4	114.8°	109.5°
PT1	O1	H3	109.5°	114.0°
PT1	O4	H2	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	PT1	O2	O1	123.6°	120.0°
O3	PT1	O2	O4	121.1°	120.0°
O3	PT1	O1	O4	110.1°	120.0°
O3	PT1	O4	H2	90.0°	60.0°
O3	PT1	O2	H4	180.0°	60.0°
O3	PT1	O1	H3	180.0°	180.0°
O2	PT1	O1	O4	72.3°	120.0°
O2	PT1	O3	H1	180.0°	60.0°
O2	PT1	O4	H2	90.0°	60.0°
O2	PT1	O1	H3	2.4°	60.1°
O1	PT1	O3	H1	56.4°	60.0°
O1	PT1	O4	H2	90.0°	180.0°
O1	PT1	O2	H4	56.4°	60.0°
O4	PT1	O3	H1	59.7°	180.0°
O4	PT1	O2	H4	58.9°	180.0°
O4	PT1	O1	H3	69.9°	60.0°

250359

PDB entries from 2026-03-11

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