6AZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3P | P | doub | 1.48Å | 1.51Å | |
| P | O1P | sing | 1.61Å | 1.54Å | |
| P | O2P | sing | 1.61Å | 1.53Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.54Å | 1.54Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.39Å | |
| C2' | C1' | sing | 1.54Å | 1.48Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| C1' | N1 | sing | 1.47Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C6 | sing | 1.39Å | 1.45Å | |
| N1 | C2 | sing | 1.34Å | 1.43Å | |
| C6 | C5 | doub | 1.41Å | 1.36Å | |
| C6 | N7 | sing | 1.31Å | 1.42Å | |
| C5 | C4 | sing | 1.42Å | 1.41Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C4 | N3 | sing | 1.35Å | 1.42Å | |
| N3 | C2 | sing | 1.34Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C2 | O2 | doub | 1.22Å | 1.19Å | |
| N7 | N8 | doub | 1.12Å | 1.24Å | |
| N8 | N9 | doub | 1.12Å | 1.24Å | |
| O1P | H11 | sing | 0.97Å | 0.95Å | |
| O2P | H12 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3P | P | O1P | 111.0° | 109.4° |
| O3P | P | O2P | 111.7° | 109.4° |
| O3P | P | O5' | 107.9° | 109.5° |
| O1P | P | O2P | 109.5° | 109.5° |
| O1P | P | O5' | 110.3° | 109.5° |
| P | O1P | H11 | 109.5° | 114.0° |
| O2P | P | O5' | 106.3° | 109.5° |
| P | O2P | H12 | 109.5° | 114.0° |
| P | O5' | C5' | 120.7° | 123.0° |
| O5' | C5' | C4' | 104.7° | 109.4° |
| O5' | C5' | H5' | 111.1° | 109.5° |
| O5' | C5' | H5'A | 112.1° | 109.5° |
| C4' | C5' | H5' | 111.1° | 109.5° |
| C4' | C5' | H5'A | 112.1° | 109.5° |
| C5' | C4' | C3' | 116.9° | 110.3° |
| C5' | C4' | O4' | 110.1° | 110.4° |
| C5' | C4' | H4' | 102.0° | 110.3° |
| H5' | C5' | H5'A | 105.8° | 109.5° |
| C3' | C4' | O4' | 102.9° | 104.8° |
| C3' | C4' | H4' | 109.3° | 110.3° |
| C4' | C3' | O3' | 110.1° | 110.5° |
| C4' | C3' | C2' | 103.2° | 104.1° |
| C4' | C3' | H3' | 113.8° | 110.5° |
| O4' | C4' | H4' | 116.2° | 110.5° |
| C4' | O4' | C1' | 111.0° | 105.3° |
| O3' | C3' | C2' | 111.5° | 110.5° |
| O3' | C3' | H3' | 105.9° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 112.5° | 110.6° |
| C3' | C2' | O2' | 112.1° | 110.5° |
| C3' | C2' | C1' | 102.3° | 104.0° |
| C3' | C2' | H2' | 113.7° | 110.5° |
| O2' | C2' | C1' | 112.8° | 110.5° |
| O2' | C2' | H2' | 103.4° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 113.0° | 110.6° |
| C2' | C1' | O4' | 104.9° | 104.8° |
| C2' | C1' | N1 | 120.5° | 110.4° |
| C2' | C1' | H1' | 104.4° | 110.4° |
| O4' | C1' | N1 | 106.9° | 110.4° |
| O4' | C1' | H1' | 118.6° | 110.4° |
| N1 | C1' | H1' | 102.3° | 110.4° |
| C1' | N1 | C6 | 121.5° | 119.9° |
| C1' | N1 | C2 | 117.2° | 119.8° |
| C6 | N1 | C2 | 120.9° | 120.3° |
| N1 | C6 | C5 | 119.3° | 118.6° |
| N1 | C6 | N7 | 114.4° | 120.7° |
| N1 | C2 | N3 | 115.4° | 121.8° |
| N1 | C2 | O2 | 121.2° | 119.1° |
| C5 | C6 | N7 | 124.8° | 120.7° |
| C6 | C5 | C4 | 121.7° | 118.4° |
| C6 | C5 | H5 | 119.1° | 120.8° |
| C6 | N7 | N8 | 104.3° | 120.0° |
| C4 | C5 | H5 | 119.2° | 120.8° |
| C5 | C4 | O4 | 127.0° | 120.3° |
| C5 | C4 | N3 | 116.1° | 119.5° |
| O4 | C4 | N3 | 116.9° | 120.2° |
| C4 | N3 | C2 | 126.5° | 121.3° |
| C4 | N3 | HN3 | 116.7° | 119.3° |
| C2 | N3 | HN3 | 116.8° | 119.3° |
| N3 | C2 | O2 | 123.4° | 119.1° |
| N7 | N8 | N9 | 180.0° | 179.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3P | P | O1P | O2P | 123.8° | 119.9° |
| O3P | P | O1P | O5' | 119.6° | 120.0° |
| O3P | P | O2P | O5' | 117.4° | 120.0° |
| O3P | P | O5' | C5' | 94.7° | 55.0° |
| O3P | P | O1P | H11 | 31.7° | 60.0° |
| O3P | P | O2P | H12 | 149.0° | 180.0° |
| O1P | P | O2P | O5' | 119.1° | 120.0° |
| O1P | P | O5' | C5' | 26.8° | 175.0° |
| O1P | P | O2P | H12 | 87.6° | 60.0° |
| O2P | P | O5' | C5' | 145.3° | 65.0° |
| O2P | P | O1P | H11 | 92.2° | 60.0° |
| P | O5' | C5' | C4' | 171.3° | 180.0° |
| P | O5' | C5' | H5' | 68.7° | 60.0° |
| P | O5' | C5' | H5'A | 49.5° | 60.0° |
| O5' | P | O1P | H11 | 151.3° | 180.0° |
| O5' | P | O2P | H12 | 31.6° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 119.9° |
| O5' | C5' | C4' | H5'A | 121.8° | 120.0° |
| O5' | C5' | H5' | H5'A | 122.0° | 120.0° |
| O5' | C5' | C4' | C3' | 71.4° | 175.0° |
| O5' | C5' | C4' | O4' | 171.7° | 69.6° |
| O5' | C5' | C4' | H4' | 47.7° | 52.8° |
| C4' | C5' | H5' | H5'A | 121.9° | 120.1° |
| C5' | C4' | C3' | O4' | 120.8° | 118.8° |
| C5' | C4' | C3' | H4' | 115.2° | 122.2° |
| C5' | C4' | O4' | H4' | 115.3° | 122.3° |
| C5' | C4' | C3' | O3' | 152.9° | 98.5° |
| C5' | C4' | C3' | C2' | 88.0° | 142.8° |
| C5' | C4' | C3' | H3' | 34.2° | 24.0° |
| C5' | C4' | O4' | C1' | 111.2° | 159.3° |
| H5' | C5' | C4' | C3' | 168.5° | 65.1° |
| H5' | C5' | C4' | O4' | 51.6° | 50.3° |
| H5' | C5' | C4' | H4' | 72.3° | 172.7° |
| H5'A | C5' | C4' | C3' | 50.4° | 55.0° |
| H5'A | C5' | C4' | O4' | 66.5° | 170.3° |
| H5'A | C5' | C4' | H4' | 169.5° | 67.2° |
| C3' | C4' | O4' | H4' | 119.4° | 118.9° |
| C4' | C3' | O3' | C2' | 113.9° | 114.7° |
| C4' | C3' | O3' | H3' | 123.4° | 122.6° |
| C4' | C3' | C2' | H3' | 123.1° | 118.7° |
| C4' | C3' | O3' | HO3' | 109.3° | 179.9° |
| C4' | C3' | C2' | O2' | 161.0° | 118.7° |
| C4' | C3' | C2' | C1' | 39.9° | 0.0° |
| C4' | C3' | C2' | H2' | 82.2° | 118.8° |
| C3' | C4' | O4' | C1' | 14.1° | 40.5° |
| O4' | C4' | C3' | O3' | 86.3° | 142.6° |
| O4' | C4' | C3' | C2' | 32.7° | 24.0° |
| O4' | C4' | C3' | H3' | 155.0° | 94.8° |
| C4' | O4' | C1' | C2' | 11.2° | 40.6° |
| C4' | O4' | C1' | N1 | 140.3° | 159.4° |
| C4' | O4' | C1' | H1' | 104.8° | 78.3° |
| H4' | C4' | C3' | O3' | 37.7° | 23.7° |
| H4' | C4' | C3' | C2' | 156.8° | 95.0° |
| H4' | C4' | C3' | H3' | 81.0° | 146.2° |
| H4' | C4' | O4' | C1' | 133.5° | 78.3° |
| O3' | C3' | C2' | H3' | 118.8° | 122.6° |
| O3' | C3' | C2' | O2' | 42.8° | 0.0° |
| O3' | C3' | C2' | C1' | 78.2° | 118.7° |
| O3' | C3' | C2' | H2' | 159.6° | 122.6° |
| C2' | C3' | O3' | HO3' | 4.6° | 65.4° |
| C3' | C2' | O2' | C1' | 114.8° | 114.6° |
| C3' | C2' | O2' | H2' | 122.8° | 122.6° |
| C3' | C2' | C1' | H2' | 122.6° | 118.7° |
| C3' | C2' | O2' | HO2' | 92.8° | 61.4° |
| C3' | C2' | C1' | O4' | 31.0° | 24.0° |
| C3' | C2' | C1' | N1 | 151.5° | 142.9° |
| C3' | C2' | C1' | H1' | 94.5° | 94.9° |
| H3' | C3' | O3' | HO3' | 127.3° | 57.3° |
| H3' | C3' | C2' | O2' | 76.0° | 122.7° |
| H3' | C3' | C2' | C1' | 163.0° | 118.7° |
| H3' | C3' | C2' | H2' | 40.8° | 0.1° |
| O2' | C2' | C1' | H2' | 116.8° | 122.7° |
| O2' | C2' | C1' | O4' | 151.6° | 142.6° |
| O2' | C2' | C1' | N1 | 87.9° | 98.5° |
| O2' | C2' | C1' | H1' | 26.1° | 23.7° |
| C1' | C2' | O2' | HO2' | 22.0° | 176.1° |
| C2' | C1' | O4' | N1 | 129.1° | 118.8° |
| C2' | C1' | O4' | H1' | 116.0° | 118.9° |
| C2' | C1' | N1 | H1' | 115.1° | 122.3° |
| C2' | C1' | N1 | C6 | 122.9° | 115.0° |
| C2' | C1' | N1 | C2 | 64.8° | 65.3° |
| H2' | C2' | O2' | HO2' | 144.4° | 61.2° |
| H2' | C2' | C1' | O4' | 91.6° | 94.7° |
| H2' | C2' | C1' | N1 | 28.9° | 24.2° |
| H2' | C2' | C1' | H1' | 142.9° | 146.4° |
| O4' | C1' | N1 | H1' | 125.4° | 122.3° |
| O4' | C1' | N1 | C6 | 117.6° | 129.6° |
| O4' | C1' | N1 | C2 | 54.6° | 50.1° |
| C1' | N1 | C6 | C2 | 171.9° | 179.7° |
| C1' | N1 | C6 | C5 | 168.7° | 180.0° |
| C1' | N1 | C6 | N7 | 25.0° | 0.1° |
| C1' | N1 | C2 | N3 | 168.0° | 179.8° |
| C1' | N1 | C2 | O2 | 11.1° | 0.0° |
| H1' | C1' | N1 | C6 | 7.8° | 7.3° |
| H1' | C1' | N1 | C2 | 180.0° | 172.5° |
| N1 | C6 | C5 | N7 | 164.8° | 179.9° |
| N1 | C6 | C5 | C4 | 0.8° | 0.1° |
| N1 | C6 | C5 | H5 | 179.2° | 180.0° |
| C6 | N1 | C2 | N3 | 4.3° | 0.5° |
| C6 | N1 | C2 | O2 | 176.7° | 179.7° |
| N1 | C6 | N7 | N8 | 107.6° | 180.0° |
| C2 | N1 | C6 | C5 | 3.2° | 0.3° |
| C2 | N1 | C6 | N7 | 163.1° | 179.8° |
| N1 | C2 | N3 | C4 | 1.7° | 0.5° |
| N1 | C2 | N3 | O2 | 179.0° | 179.8° |
| N1 | C2 | N3 | HN3 | 178.3° | 179.7° |
| C6 | C5 | C4 | H5 | 180.0° | 180.0° |
| C6 | C5 | C4 | O4 | 176.0° | 180.0° |
| C6 | C5 | C4 | N3 | 3.3° | 0.1° |
| C5 | C6 | N7 | N8 | 87.0° | 0.1° |
| N7 | C6 | C5 | C4 | 165.6° | 180.0° |
| N7 | C6 | C5 | H5 | 14.4° | 0.0° |
| C6 | N7 | N8 | N9 | 90.0° | 169.5° |
| C5 | C4 | O4 | N3 | 179.3° | 180.0° |
| C5 | C4 | N3 | C2 | 2.1° | 0.3° |
| C5 | C4 | N3 | HN3 | 177.9° | 179.9° |
| H5 | C5 | C4 | O4 | 4.0° | 0.0° |
| H5 | C5 | C4 | N3 | 176.7° | 180.0° |
| O4 | C4 | N3 | C2 | 177.3° | 179.8° |
| O4 | C4 | N3 | HN3 | 2.7° | 0.0° |
| C4 | N3 | C2 | HN3 | 180.0° | 179.8° |
| C4 | N3 | C2 | O2 | 179.3° | 179.7° |
| HN3 | N3 | C2 | O2 | 0.7° | 0.1° |
