674
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5 | C4' | sing | 1.36Å | 1.36Å | |
C4' | C5' | doub | 1.39Å | 1.42Å | Aromatic |
C4' | C3' | sing | 1.39Å | 1.43Å | Aromatic |
C5' | C6' | sing | 1.38Å | 1.42Å | Aromatic |
C3' | C2' | doub | 1.38Å | 1.42Å | Aromatic |
C6' | C1' | doub | 1.39Å | 1.44Å | Aromatic |
C2' | C1' | sing | 1.39Å | 1.44Å | Aromatic |
C1' | C3 | sing | 1.48Å | 1.51Å | |
O2 | C4 | doub | 1.22Å | 1.24Å | |
C3 | C4 | sing | 1.48Å | 1.53Å | |
C3 | C2 | doub | 1.36Å | 1.38Å | |
C4 | C4A | sing | 1.47Å | 1.50Å | |
C2 | O1 | sing | 1.33Å | 1.39Å | |
C4A | C5 | doub | 1.39Å | 1.43Å | Aromatic |
C4A | C8A | sing | 1.41Å | 1.43Å | Aromatic |
C5 | C6 | sing | 1.38Å | 1.42Å | Aromatic |
O1 | C8A | sing | 1.35Å | 1.39Å | |
C8A | C8 | doub | 1.39Å | 1.43Å | Aromatic |
C6 | O3 | sing | 1.36Å | 1.37Å | |
C6 | C7 | doub | 1.40Å | 1.43Å | Aromatic |
C8 | C7 | sing | 1.38Å | 1.43Å | Aromatic |
C7 | O4 | sing | 1.36Å | 1.37Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C2' | H2' | sing | 1.08Å | 1.08Å | |
C3' | H3' | sing | 1.08Å | 1.08Å | |
C5' | H5' | sing | 1.08Å | 1.08Å | |
C6' | H6' | sing | 1.08Å | 1.08Å | |
O5 | HO5 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O5 | C4' | C5' | 120.3° | 119.9° |
O5 | C4' | C3' | 121.9° | 119.9° |
C4' | O5 | HO5 | 109.5° | 114.0° |
C5' | C4' | C3' | 117.8° | 120.1° |
C4' | C5' | C6' | 121.3° | 120.1° |
C4' | C5' | H5' | 119.3° | 120.0° |
C4' | C3' | C2' | 121.0° | 120.1° |
C4' | C3' | H3' | 119.5° | 120.0° |
C5' | C6' | C1' | 121.7° | 119.9° |
C6' | C5' | H5' | 119.3° | 120.0° |
C5' | C6' | H6' | 119.2° | 120.0° |
C3' | C2' | C1' | 121.5° | 120.0° |
C3' | C2' | H2' | 119.2° | 120.0° |
C2' | C3' | H3' | 119.5° | 119.9° |
C6' | C1' | C2' | 116.7° | 119.8° |
C6' | C1' | C3 | 121.4° | 120.1° |
C1' | C6' | H6' | 119.2° | 120.0° |
C2' | C1' | C3 | 122.0° | 120.1° |
C1' | C2' | H2' | 119.3° | 120.0° |
C1' | C3 | C4 | 121.0° | 121.0° |
C1' | C3 | C2 | 122.1° | 121.0° |
O2 | C4 | C3 | 123.4° | 122.1° |
O2 | C4 | C4A | 120.2° | 122.1° |
C4 | C3 | C2 | 116.9° | 118.0° |
C3 | C4 | C4A | 116.4° | 115.8° |
C3 | C2 | O1 | 126.8° | 123.1° |
C3 | C2 | H2 | 116.6° | 118.5° |
C4 | C4A | C5 | 120.7° | 121.4° |
C4 | C4A | C8A | 118.6° | 118.0° |
C2 | O1 | C8A | 118.4° | 121.3° |
O1 | C2 | H2 | 116.6° | 118.4° |
C5 | C4A | C8A | 120.7° | 120.6° |
C4A | C5 | C6 | 121.5° | 119.6° |
C4A | C5 | H5 | 119.2° | 120.2° |
C4A | C8A | O1 | 122.9° | 120.5° |
C4A | C8A | C8 | 116.7° | 119.1° |
C5 | C6 | O3 | 119.9° | 120.0° |
C5 | C6 | C7 | 119.1° | 120.0° |
C6 | C5 | H5 | 119.2° | 120.2° |
O1 | C8A | C8 | 120.4° | 120.4° |
C8A | C8 | C7 | 123.5° | 120.0° |
C8A | C8 | H8 | 118.2° | 120.0° |
O3 | C6 | C7 | 121.0° | 120.0° |
C6 | O3 | HO3 | 109.5° | 114.0° |
C6 | C7 | C8 | 118.5° | 120.6° |
C6 | C7 | O4 | 121.0° | 119.7° |
C8 | C7 | O4 | 120.6° | 119.7° |
C7 | C8 | H8 | 118.2° | 120.0° |
C7 | O4 | HO4 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5 | C4' | C5' | C3' | 179.7° | 179.7° |
O5 | C4' | C5' | C6' | 179.3° | 180.0° |
O5 | C4' | C3' | C2' | 179.2° | 179.7° |
O5 | C4' | C3' | H3' | 0.8° | 0.2° |
O5 | C4' | C5' | H5' | 0.7° | 0.3° |
C4' | C5' | C6' | H5' | 180.0° | 179.7° |
C5' | C4' | C3' | C2' | 0.5° | 0.1° |
C4' | C5' | C6' | C1' | 0.0° | 0.5° |
C5' | C4' | C3' | H3' | 179.5° | 180.0° |
C4' | C5' | C6' | H6' | 180.0° | 180.0° |
C5' | C4' | O5 | HO5 | 47.3° | 90.0° |
C3' | C4' | C5' | C6' | 0.4° | 0.2° |
C4' | C3' | C2' | H3' | 180.0° | 179.9° |
C4' | C3' | C2' | C1' | 0.1° | 0.1° |
C4' | C3' | C2' | H2' | 179.9° | 179.9° |
C3' | C4' | C5' | H5' | 179.5° | 180.0° |
C3' | C4' | O5 | HO5 | 132.4° | 89.7° |
C5' | C6' | C1' | H6' | 180.0° | 179.5° |
C5' | C6' | C1' | C2' | 0.4° | 0.5° |
C5' | C6' | C1' | C3 | 178.7° | 179.7° |
C3' | C2' | C1' | C6' | 0.4° | 0.2° |
C3' | C2' | C1' | H2' | 180.0° | 180.0° |
C3' | C2' | C1' | C3 | 178.8° | 180.0° |
C6' | C1' | C2' | C3 | 179.1° | 179.8° |
C6' | C1' | C3 | C4 | 24.1° | 64.7° |
C6' | C1' | C3 | C2 | 156.4° | 115.3° |
C6' | C1' | C2' | H2' | 179.6° | 179.7° |
C1' | C6' | C5' | H5' | 180.0° | 179.7° |
C2' | C1' | C3 | C4 | 155.0° | 115.1° |
C2' | C1' | C3 | C2 | 24.5° | 65.0° |
C1' | C2' | C3' | H3' | 179.9° | 180.0° |
C2' | C1' | C6' | H6' | 179.5° | 180.0° |
C1' | C3 | C4 | O2 | 0.3° | 12.9° |
C1' | C3 | C4 | C2 | 179.5° | 180.0° |
C1' | C3 | C4 | C4A | 179.4° | 167.2° |
C1' | C3 | C2 | O1 | 179.6° | 179.1° |
C1' | C3 | C2 | H2 | 0.4° | 0.9° |
C3 | C1' | C2' | H2' | 1.3° | 0.0° |
C3 | C1' | C6' | H6' | 1.3° | 0.2° |
O2 | C4 | C3 | C4A | 179.8° | 179.9° |
O2 | C4 | C3 | C2 | 179.9° | 167.1° |
O2 | C4 | C4A | C5 | 0.0° | 12.9° |
O2 | C4 | C4A | C8A | 179.9° | 167.5° |
C4 | C3 | C2 | O1 | 0.0° | 0.9° |
C3 | C4 | C4A | C5 | 179.8° | 167.2° |
C3 | C4 | C4A | C8A | 0.1° | 12.4° |
C4 | C3 | C2 | H2 | 180.0° | 179.1° |
C2 | C3 | C4 | C4A | 0.1° | 12.8° |
C3 | C2 | O1 | H2 | 180.0° | 180.0° |
C3 | C2 | O1 | C8A | 0.2° | 16.1° |
C4 | C4A | C5 | C8A | 179.9° | 179.6° |
C4 | C4A | C5 | C6 | 179.9° | 179.3° |
C4 | C4A | C8A | O1 | 0.0° | 1.4° |
C4 | C4A | C8A | C8 | 179.9° | 179.0° |
C4 | C4A | C5 | H5 | 0.1° | 0.8° |
C2 | O1 | C8A | C4A | 0.1° | 16.0° |
C2 | O1 | C8A | C8 | 179.8° | 164.3° |
C4A | C5 | C6 | H5 | 180.0° | 180.0° |
C5 | C4A | C8A | O1 | 179.9° | 179.0° |
C5 | C4A | C8A | C8 | 0.0° | 0.6° |
C4A | C5 | C6 | O3 | 179.9° | 180.0° |
C4A | C5 | C6 | C7 | 0.0° | 0.0° |
C8A | C4A | C5 | C6 | 0.0° | 0.4° |
C4A | C8A | O1 | C8 | 179.9° | 179.6° |
C4A | C8A | C8 | C7 | 0.1° | 0.4° |
C4A | C8A | C8 | H8 | 180.0° | 179.6° |
C8A | C4A | C5 | H5 | 180.0° | 179.6° |
C5 | C6 | O3 | C7 | 179.9° | 180.0° |
C5 | C6 | C7 | C8 | 0.0° | 0.2° |
C5 | C6 | C7 | O4 | 179.9° | 179.7° |
C5 | C6 | O3 | HO3 | 176.3° | 90.0° |
O1 | C8A | C8 | C7 | 179.9° | 179.2° |
C8A | O1 | C2 | H2 | 179.8° | 163.9° |
O1 | C8A | C8 | H8 | 0.1° | 0.8° |
C8A | C8 | C7 | C6 | 0.0° | 0.0° |
C8A | C8 | C7 | H8 | 180.0° | 180.0° |
C8A | C8 | C7 | O4 | 179.9° | 180.0° |
O3 | C6 | C7 | C8 | 179.9° | 179.8° |
O3 | C6 | C7 | O4 | 0.1° | 0.2° |
O3 | C6 | C5 | H5 | 0.1° | 0.0° |
C6 | C7 | C8 | O4 | 180.0° | 180.0° |
C6 | C7 | C8 | H8 | 180.0° | 180.0° |
C7 | C6 | C5 | H5 | 180.0° | 180.0° |
C6 | C7 | O4 | HO4 | 156.6° | 90.0° |
C7 | C6 | O3 | HO3 | 3.8° | 90.0° |
C8 | C7 | O4 | HO4 | 23.4° | 90.0° |
O4 | C7 | C8 | H8 | 0.1° | 0.1° |
H2' | C2' | C3' | H3' | 0.1° | 0.0° |
H5' | C5' | C6' | H6' | 0.0° | 0.2° |