63H

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.61Å	1.61Å
O3P	HO3P	sing	0.97Å	0.95Å
O4'	C1'	sing	1.44Å	1.43Å
C2'	C1'	sing	1.54Å	1.51Å
N9	C1'	sing	1.47Å	1.48Å
C1'	H1'	sing	1.09Å	1.10Å
O10	C10	sing	1.43Å	1.43Å
H10	C10	sing	1.09Å	1.10Å
C11	C10	sing	1.54Å	1.51Å
C10	N2	sing	1.47Å	1.40Å
H11	C11	sing	1.09Å	1.10Å
H11A	C11	sing	1.09Å	1.10Å
C11	C12	sing	1.53Å	1.51Å
H12	C12	sing	1.09Å	1.10Å
C12	H12A	sing	1.09Å	1.10Å
C12	N1	sing	1.47Å	1.42Å
N2	C2	sing	1.38Å	1.38Å
N1	C2	sing	1.36Å	1.40Å
C2	N3	doub	1.32Å	1.33Å
H2'	C2'	sing	1.09Å	1.10Å
C3'	C2'	sing	1.55Å	1.52Å
C2'	H2'A	sing	1.09Å	1.10Å
H3'	C3'	sing	1.09Å	1.10Å
C4'	C3'	sing	1.55Å	1.52Å
C3'	O3'	sing	1.43Å	1.43Å
N3	C4	sing	1.34Å	1.35Å
C4	C5	doub	1.40Å	1.37Å	Aromatic
C4	N9	sing	1.37Å	1.38Å	Aromatic
C5'	C4'	sing	1.53Å	1.52Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	H4'	sing	1.09Å	1.10Å
C6	C5	sing	1.41Å	1.42Å
C5	N7	sing	1.36Å	1.39Å	Aromatic
O5'	C5'	sing	1.43Å	1.43Å
H5''	C5'	sing	1.09Å	1.10Å
H5'	C5'	sing	1.09Å	1.10Å
N1	C6	sing	1.36Å	1.40Å
O6	C6	doub	1.22Å	1.23Å
N9	C8	sing	1.37Å	1.37Å	Aromatic
N7	C8	doub	1.30Å	1.30Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
HN2	N2	sing	0.97Å	1.00Å
O10	HO10	sing	0.97Å	0.95Å
O1P	P	sing	1.61Å	1.48Å
O1P	HO1P	sing	0.97Å	0.95Å
O2P	P	doub	1.48Å	1.48Å
O3'	HO3'	sing	0.97Å	0.95Å
P	O5'	sing	1.61Å	1.60Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	HO3P	109.5°	114.0°
O3P	P	O1P	108.9°	109.5°
O3P	P	O2P	107.6°	109.5°
O3P	P	O5'	101.7°	109.5°
O4'	C1'	C2'	104.4°	107.3°
O4'	C1'	N9	105.9°	110.0°
O4'	C1'	H1'	116.9°	109.9°
C1'	O4'	C4'	109.1°	107.0°
C2'	C1'	N9	115.1°	109.8°
C2'	C1'	H1'	108.2°	109.9°
C1'	C2'	H2'	110.7°	110.5°
C1'	C2'	C3'	105.9°	104.2°
C1'	C2'	H2'A	111.5°	110.5°
N9	C1'	H1'	106.6°	109.9°
C1'	N9	C4	126.2°	126.3°
C1'	N9	C8	128.4°	126.3°
O10	C10	H10	116.8°	109.9°
O10	C10	C11	108.3°	109.9°
O10	C10	N2	104.2°	109.8°
C10	O10	HO10	109.5°	114.0°
H10	C10	C11	103.3°	109.9°
H10	C10	N2	107.4°	109.9°
C11	C10	N2	117.5°	107.4°
C10	C11	H11	108.0°	109.7°
C10	C11	H11A	107.0°	109.7°
C10	C11	C12	113.9°	108.2°
C10	N2	C2	124.4°	119.2°
C10	N2	HN2	117.8°	120.4°
H11	C11	H11A	113.0°	109.8°
H11	C11	C12	108.0°	109.7°
H11A	C11	C12	107.0°	109.7°
C11	C12	H12	105.4°	109.3°
C11	C12	H12A	102.3°	109.2°
C11	C12	N1	122.4°	110.6°
H12	C12	H12A	120.3°	109.2°
H12	C12	N1	105.3°	109.2°
H12A	C12	N1	102.3°	109.3°
C12	N1	C2	117.3°	122.0°
C12	N1	C6	118.7°	117.9°
N2	C2	N1	121.7°	120.8°
N2	C2	N3	115.4°	117.7°
C2	N2	HN2	117.8°	120.3°
N1	C2	N3	122.9°	121.5°
C2	N1	C6	124.0°	120.0°
C2	N3	C4	113.3°	121.7°
H2'	C2'	C3'	110.7°	110.6°
H2'	C2'	H2'A	106.7°	110.5°
C3'	C2'	H2'A	111.4°	110.5°
C2'	C3'	H3'	109.5°	110.9°
C2'	C3'	C4'	103.5°	102.1°
C2'	C3'	O3'	113.7°	110.9°
H3'	C3'	C4'	117.1°	110.9°
H3'	C3'	O3'	107.6°	110.8°
C4'	C3'	O3'	105.5°	110.9°
C3'	C4'	C5'	112.7°	110.7°
C3'	C4'	O4'	108.1°	103.5°
C3'	C4'	H4'	108.8°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
N3	C4	C5	128.0°	119.5°
N3	C4	N9	125.6°	134.4°
C5	C4	N9	106.4°	106.1°
C4	C5	C6	119.9°	118.5°
C4	C5	N7	110.3°	107.2°
C4	N9	C8	105.4°	107.5°
C5'	C4'	O4'	111.1°	110.7°
C5'	C4'	H4'	105.7°	110.7°
C4'	C5'	O5'	111.9°	109.5°
C4'	C5'	H5''	108.6°	109.4°
C4'	C5'	H5'	108.1°	109.5°
O4'	C4'	H4'	110.5°	110.6°
C6	C5	N7	129.9°	134.3°
C5	C6	N1	112.0°	118.7°
C5	C6	O6	126.8°	120.6°
C5	N7	C8	104.2°	109.4°
O5'	C5'	H5''	108.7°	109.4°
O5'	C5'	H5'	108.1°	109.5°
C5'	O5'	P	121.6°	123.0°
H5''	C5'	H5'	111.4°	109.5°
N1	C6	O6	121.2°	120.6°
N9	C8	N7	113.7°	109.8°
N9	C8	H8	123.1°	125.1°
N7	C8	H8	123.1°	125.1°
P	O1P	HO1P	109.5°	114.0°
O1P	P	O2P	120.8°	109.5°
O1P	P	O5'	108.9°	109.5°
O2P	P	O5'	107.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O5'	C5'	68.5°	64.9°
O3P	P	O1P	O2P	125.1°	120.0°
O3P	P	O1P	O5'	110.1°	120.0°
O3P	P	O1P	HO1P	97.2°	60.0°
O3P	P	O2P	O5'	108.8°	120.0°
HO3P	O3P	P	O1P	81.5°	60.0°
HO3P	O3P	P	O2P	51.0°	180.0°
HO3P	O3P	P	O5'	163.7°	60.0°
O4'	C1'	C2'	N9	115.7°	119.5°
O4'	C1'	C2'	H1'	125.2°	119.5°
O4'	C1'	N9	H1'	125.3°	121.1°
O4'	C1'	C2'	H2'	148.4°	120.8°
O4'	C1'	C2'	C3'	28.4°	2.1°
O4'	C1'	C2'	H2'A	92.9°	116.6°
C1'	O4'	C4'	C3'	19.6°	40.1°
O4'	C1'	N9	C4	65.5°	156.8°
C1'	O4'	C4'	C5'	143.8°	158.6°
C1'	O4'	C4'	H4'	99.3°	78.4°
O4'	C1'	N9	C8	112.4°	23.1°
C2'	C1'	N9	H1'	119.9°	121.0°
C1'	C2'	H2'	C3'	117.1°	114.8°
C1'	C2'	H2'	H2'A	121.5°	122.6°
C1'	C2'	C3'	H2'A	121.4°	118.6°
C1'	C2'	C3'	H3'	142.2°	97.3°
C1'	C2'	C3'	C4'	16.6°	20.9°
C1'	C2'	C3'	O3'	97.4°	139.1°
C2'	C1'	N9	C4	49.3°	85.3°
C2'	C1'	O4'	C4'	29.9°	26.5°
C2'	C1'	N9	C8	132.8°	94.8°
N9	C1'	C2'	H2'	95.9°	119.6°
N9	C1'	C2'	C3'	144.1°	121.6°
N9	C1'	C2'	H2'A	22.7°	3.0°
C1'	N9	C4	N3	1.8°	0.8°
C1'	N9	C4	C5	178.1°	179.7°
C1'	N9	C4	C8	178.3°	179.9°
N9	C1'	O4'	C4'	151.8°	146.0°
C1'	N9	C8	N7	178.0°	179.8°
C1'	N9	C8	H8	2.0°	0.1°
H1'	C1'	C2'	H2'	23.2°	1.3°
H1'	C1'	C2'	C3'	96.8°	117.4°
H1'	C1'	C2'	H2'A	141.8°	123.9°
H1'	C1'	N9	C4	169.2°	35.6°
H1'	C1'	O4'	C4'	89.6°	92.9°
H1'	C1'	N9	C8	12.9°	144.3°
O10	C10	H10	C11	118.7°	121.1°
O10	C10	H10	N2	116.5°	121.0°
O10	C10	C11	N2	117.6°	119.4°
O10	C10	C11	H11	9.8°	61.5°
O10	C10	C11	H11A	131.8°	177.9°
O10	C10	C11	C12	110.2°	58.2°
O10	C10	N2	C2	126.3°	74.7°
O10	C10	N2	HN2	53.7°	105.3°
H10	C10	C11	N2	118.0°	119.5°
H10	C10	C11	H11	114.7°	59.6°
H10	C10	C11	H11A	7.3°	61.0°
H10	C10	C11	C12	125.4°	179.3°
H10	C10	N2	C2	109.2°	164.2°
H10	C10	N2	HN2	70.8°	15.7°
H10	C10	O10	HO10	34.6°	61.0°
C10	C11	H11	H11A	118.2°	120.6°
C10	C11	H11	C12	123.7°	118.8°
C10	C11	H11A	C12	122.5°	118.8°
C10	C11	C12	H12	101.7°	67.7°
C10	C11	C12	H12A	131.7°	172.9°
C10	C11	C12	N1	18.3°	52.6°
C11	C10	N2	C2	6.6°	44.7°
C11	C10	N2	HN2	173.4°	135.2°
C11	C10	O10	HO10	81.3°	177.9°
N2	C10	C11	H11	127.4°	179.1°
N2	C10	C11	H11A	110.6°	58.5°
N2	C10	C11	C12	7.4°	61.2°
C10	N2	C2	HN2	180.0°	179.9°
C10	N2	C2	N1	11.2°	17.7°
C10	N2	C2	N3	169.0°	164.3°
N2	C10	O10	HO10	152.9°	60.0°
H11	C11	H11A	C12	118.7°	120.7°
H11	C11	C12	H12	18.3°	52.0°
H11	C11	C12	H12A	108.3°	67.4°
H11	C11	C12	N1	138.3°	172.3°
H11A	C11	C12	H12	140.3°	172.7°
H11A	C11	C12	H12A	13.7°	53.3°
H11A	C11	C12	N1	99.7°	67.0°
C11	C12	H12	H12A	114.6°	119.4°
C11	C12	H12	N1	130.7°	121.2°
C11	C12	H12A	N1	127.6°	121.1°
C11	C12	N1	C2	14.9°	26.2°
C11	C12	N1	C6	165.1°	154.2°
H12	C12	H12A	N1	116.2°	119.4°
H12	C12	N1	C2	105.1°	94.1°
H12	C12	N1	C6	74.9°	85.4°
H12A	C12	N1	C2	128.3°	146.5°
H12A	C12	N1	C6	51.7°	33.9°
C12	N1	C2	N2	0.1°	7.4°
C12	N1	C2	C6	180.0°	179.5°
C12	N1	C2	N3	179.9°	174.6°
C12	N1	C6	C5	180.0°	175.3°
C12	N1	C6	O6	0.1°	4.7°
N2	C2	N1	N3	179.9°	177.9°
N2	C2	N3	C4	179.9°	175.6°
N2	C2	N1	C6	180.0°	173.0°
N1	C2	N3	C4	0.1°	2.4°
C2	N1	C6	C5	0.1°	4.2°
C2	N1	C6	O6	179.9°	175.7°
N1	C2	N2	HN2	168.8°	162.3°
C2	N3	C4	C5	0.1°	0.7°
C2	N3	C4	N9	179.9°	179.8°
N3	C2	N1	C6	0.1°	4.9°
N3	C2	N2	HN2	11.0°	15.7°
H2'	C2'	C3'	H2'A	118.6°	122.6°
H2'	C2'	C3'	H3'	97.8°	143.9°
H2'	C2'	C3'	C4'	136.5°	97.9°
H2'	C2'	C3'	O3'	22.6°	20.3°
C2'	C3'	H3'	C4'	117.4°	112.7°
C2'	C3'	H3'	O3'	124.0°	123.7°
C2'	C3'	C4'	O3'	119.7°	118.2°
C2'	C3'	C4'	C5'	124.2°	155.6°
C2'	C3'	C4'	O4'	1.0°	37.0°
C2'	C3'	C4'	H4'	119.0°	81.5°
C2'	C3'	O3'	HO3'	31.8°	61.4°
H2'A	C2'	C3'	H3'	20.8°	21.3°
H2'A	C2'	C3'	C4'	104.8°	139.5°
H2'A	C2'	C3'	O3'	141.2°	102.3°
H3'	C3'	C4'	O3'	119.7°	123.5°
H3'	C3'	C4'	C5'	3.5°	37.4°
H3'	C3'	C4'	O4'	119.6°	81.2°
H3'	C3'	C4'	H4'	120.4°	160.3°
H3'	C3'	O3'	HO3'	153.2°	62.3°
C3'	C4'	C5'	O4'	121.5°	114.1°
C3'	C4'	C5'	H4'	118.7°	122.9°
C3'	C4'	O4'	H4'	118.9°	118.4°
C3'	C4'	C5'	O5'	55.3°	175.0°
C3'	C4'	C5'	H5''	175.3°	65.0°
C3'	C4'	C5'	H5'	63.7°	55.0°
C4'	C3'	O3'	HO3'	81.0°	174.1°
O3'	C3'	C4'	C5'	116.1°	86.2°
O3'	C3'	C4'	O4'	120.7°	155.3°
O3'	C3'	C4'	H4'	0.7°	36.8°
N3	C4	C5	N9	179.8°	179.6°
N3	C4	C5	C6	0.1°	1.3°
N3	C4	C5	N7	180.0°	179.2°
N3	C4	N9	C8	180.0°	179.1°
C4	C5	C6	N7	180.0°	179.4°
C4	C5	C6	N1	0.1°	1.2°
C4	C5	C6	O6	179.9°	178.7°
C5	C4	N9	C8	0.2°	0.4°
C4	C5	N7	C8	0.0°	0.3°
N9	C4	C5	C6	179.9°	179.1°
N9	C4	C5	N7	0.1°	0.5°
C4	N9	C8	N7	0.2°	0.3°
C4	N9	C8	H8	179.8°	179.8°
C5'	C4'	O4'	H4'	116.9°	123.0°
C4'	C5'	O5'	H5''	120.0°	119.9°
C4'	C5'	O5'	H5'	119.0°	120.1°
C4'	C5'	H5''	H5'	119.0°	120.0°
C4'	C5'	O5'	P	176.5°	180.0°
O4'	C4'	C5'	O5'	66.2°	70.9°
O4'	C4'	C5'	H5''	53.8°	49.1°
O4'	C4'	C5'	H5'	174.8°	169.1°
H4'	C4'	C5'	O5'	173.9°	52.1°
H4'	C4'	C5'	H5''	66.1°	172.1°
H4'	C4'	C5'	H5'	54.9°	67.9°
C5	C6	N1	O6	179.8°	180.0°
C6	C5	N7	C8	180.0°	179.2°
N7	C5	C6	N1	180.0°	178.2°
N7	C5	C6	O6	0.2°	1.8°
C5	N7	C8	N9	0.1°	0.0°
C5	N7	C8	H8	179.9°	179.9°
O5'	C5'	H5''	H5'	119.0°	120.0°
C5'	O5'	P	O1P	46.4°	175.0°
C5'	O5'	P	O2P	178.7°	55.1°
H5''	C5'	O5'	P	56.6°	60.1°
H5'	C5'	O5'	P	64.5°	59.9°
N9	C8	N7	H8	180.0°	180.0°
O1P	P	O2P	O5'	125.5°	120.0°
HO1P	O1P	P	O2P	137.7°	60.0°
HO1P	O1P	P	O5'	12.9°	179.9°

Definition date:	2009-04-15
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	2KDA