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SummaryGeometryRelated PDB entries

5ZL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O05C21sing1.43Å1.44Å
O06C22sing1.43Å1.47Å
C21C22sing1.54Å1.45Å
C21C23sing1.54Å1.47Å
O08C26sing1.35Å1.38Å
C22C24sing1.55Å1.46Å
C24O04sing1.44Å1.51Å
C24N19sing1.47Å1.41Å
C23O04sing1.44Å1.50Å
C23C25sing1.53Å1.48Å
C26N19sing1.32Å1.40ÅAromatic
C26N20doub1.32Å1.41ÅAromatic
N19C27doub1.33Å1.45ÅAromatic
N20C29sing1.33Å1.43ÅAromatic
C25O07sing1.43Å1.40Å
O07P01sing1.61Å1.63Å
C27C28sing1.38Å1.42ÅAromatic
C29C28doub1.39Å1.41ÅAromatic
C29O12sing1.36Å1.38Å
O14P02doub1.48Å1.44Å
O09P01sing1.61Å1.66Å
O09P02sing1.61Å1.67Å
P01O10doub1.48Å1.44Å
P01O11sing1.61Å1.43Å
O12P30sing1.61Å1.63Å
P02O13sing1.61Å1.60Å
P02O15sing1.61Å1.43Å
O32P30doub1.48Å1.44Å
O13P03sing1.61Å1.64Å
P30O33sing1.61Å1.45Å
P30O31sing1.61Å1.43Å
P03O16doub1.48Å1.43Å
P03O18sing1.61Å1.41Å
P03O17sing1.61Å1.44Å
C21H1sing1.09Å1.10Å
C22H2sing1.09Å1.10Å
C24H3sing1.09Å1.10Å
C28H4sing1.08Å1.08Å
C23H5sing1.09Å1.10Å
C25H6sing1.09Å1.10Å
C25H7sing1.09Å1.10Å
C27H8sing1.08Å1.08Å
O05H9sing0.97Å0.95Å
O06H10sing0.97Å0.95Å
O11H11sing0.97Å0.95Å
O15H12sing0.97Å0.95Å
O17H13sing0.97Å0.95Å
O18H14sing0.97Å0.95Å
O31H15sing0.97Å0.95Å
O33H16sing0.97Å0.95Å
O08H17sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O05C21C22109.2°110.5°
O05C21C23106.9°110.5°
O05C21H1111.7°110.5°
C21O05H9109.5°114.0°
O06C22C21112.0°110.5°
O06C22C24111.0°110.5°
O06C22H2109.4°110.6°
C22O06H10109.5°114.0°
C22C21C23106.1°104.1°
C21C22C24105.3°104.1°
C22C21H1111.6°110.5°
C21C22H2109.6°110.5°
C21C23O04107.3°104.8°
C21C23C25110.5°110.3°
C23C21H1111.2°110.6°
C21C23H5110.0°110.4°
O08C26N19119.2°119.1°
O08C26N20119.6°119.2°
C26O08H17109.5°114.0°
C22C24O04105.9°104.8°
C22C24N19111.3°110.4°
C24C22H2109.5°110.5°
C22C24H3109.5°110.3°
O04C24N19111.1°110.4°
C24O04C23104.5°105.3°
O04C24H3108.7°110.4°
C24N19C26117.5°119.6°
C24N19C27123.0°119.5°
N19C24H3110.2°110.4°
O04C23C25109.3°110.4°
O04C23H5109.7°110.4°
C23C25O07107.4°109.5°
C25C23H5109.9°110.4°
C23C25H6110.0°109.5°
C23C25H7110.0°109.5°
N19C26N20121.1°121.7°
C26N19C27119.5°120.9°
C26N20C29119.6°120.7°
N19C27C28119.4°119.2°
N19C27H8120.3°120.4°
N20C29C28120.5°119.1°
N20C29O12115.9°120.5°
C25O07P01118.5°123.0°
O07C25H6110.0°109.5°
O07C25H7110.0°109.5°
O07P01O09109.1°109.4°
O07P01O10113.8°109.4°
O07P01O11110.5°109.5°
C27C28C29119.8°118.5°
C27C28H4120.1°120.8°
C28C27H8120.3°120.4°
C28C29O12123.6°120.5°
C29C28H4120.1°120.8°
C29O12P30124.2°114.0°
O14P02O09111.5°109.5°
O14P02O13112.8°109.5°
O14P02O15100.6°109.5°
P01O09P02124.8°134.0°
O09P01O10110.2°109.5°
O09P01O11111.8°109.5°
O09P02O13112.1°109.5°
O09P02O15108.5°109.5°
O10P01O11101.3°109.5°
P01O11H11109.5°114.0°
O12P30O32114.6°109.5°
O12P30O33113.0°109.5°
O12P30O31113.7°109.5°
O13P02O15110.7°109.5°
P02O13P03124.0°134.0°
P02O15H12109.5°114.0°
O32P30O33104.6°109.5°
O32P30O31105.7°109.5°
O13P03O16112.7°109.4°
O13P03O18115.3°109.4°
O13P03O17116.0°109.5°
O33P30O31104.3°109.5°
P30O33H16109.5°114.0°
P30O31H15109.5°114.0°
O16P03O18102.8°109.5°
O16P03O17105.4°109.5°
O18P03O17103.3°109.5°
P03O18H14109.5°114.0°
P03O17H13109.5°114.0°
H6C25H7109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O05C21C22O0638.3°0.0°
O05C21C22C23114.9°118.6°
O05C21C22H1123.9°122.6°
O05C21C23H1122.1°122.7°
O05C21C22C2482.4°118.7°
O05C21C23O0496.4°142.6°
O05C21C23C25144.5°98.6°
O05C21C22H2159.9°122.7°
O05C21C23H522.9°23.7°
O06C22C21C24120.7°118.7°
O06C22C21H2121.6°122.8°
O06C22C21C23153.1°118.6°
O06C22C24H2120.8°122.7°
O06C22C24O04153.5°142.6°
O06C22C24N1985.6°98.5°
O06C22C21H185.6°122.7°
O06C22C24H336.4°23.8°
C22C21C23H1121.5°118.7°
C21C22C24H2117.8°118.6°
C21C22C24O0432.2°24.0°
C21C22C24N19153.0°142.8°
C22C21C23O0420.0°24.0°
C22C21C23C2599.0°142.8°
C21C22C24H385.0°94.9°
C22C21C23H5139.3°94.9°
C22C21O05H9180.0°61.4°
C21C22O06H10180.0°61.5°
C23C21C22C2432.4°0.0°
C21C23O04C240.3°40.5°
C21C23O04C25119.8°118.8°
C21C23O04H5119.5°118.8°
C21C23C25H5121.7°122.3°
C21C23C25O0770.3°175.0°
C23C21C22H285.3°118.6°
C21C23C25H6170.1°55.0°
C21C23C25H749.4°65.0°
C23C21O05H965.6°176.1°
O08C26N19C240.4°0.4°
O08C26N19N20179.9°179.6°
O08C26N19C27179.8°179.7°
O08C26N20C29179.8°179.7°
C22C24O04N19121.0°118.8°
C22C24O04H3117.6°118.8°
C22C24N19H3121.6°122.2°
C22C24O04C2319.4°40.5°
C22C24N19C26118.3°85.0°
C22C24N19C2761.0°95.1°
C24C22C21H1153.6°118.7°
C24C22O06H1062.7°176.2°
O04C24N19H3120.6°122.4°
C24O04C23C25119.5°159.3°
O04C24N19C26123.9°159.6°
O04C24N19C2756.8°20.3°
O04C24C22H285.6°94.7°
C24O04C23H5119.8°78.3°
N19C24O04C23140.4°159.3°
C24N19C26C27179.4°179.9°
C24N19C26N20179.5°180.0°
C24N19C27C28179.7°180.0°
N19C24C22H235.2°24.2°
C24N19C27H80.3°0.0°
O04C23C25H5120.5°122.4°
O04C23C25O0747.6°69.7°
O04C23C21H1141.5°94.7°
C23O04C24H398.3°78.3°
O04C23C25H672.1°170.4°
O04C23C25H7167.2°50.3°
C23C25O07H6119.7°120.0°
C23C25O07H7119.7°120.0°
C23C25O07P01161.0°180.0°
C25C23C21H122.5°24.1°
C23C25H6H7121.0°120.0°
N19C26N20C290.3°0.1°
C26N19C27C280.3°0.1°
C26N19C24H33.3°37.2°
C26N19C27H8179.7°180.0°
N19C26O08H17179.9°90.0°
N20C26N19C270.1°0.1°
C26N20C29C280.5°0.0°
C26N20C29O12179.4°180.0°
N20C26O08H170.0°90.3°
N19C27C28H8180.0°180.0°
N19C27C28C290.2°0.0°
C27N19C24H3177.3°142.7°
N19C27C28H4179.9°180.0°
N20C29C28C270.3°0.0°
N20C29C28O12179.9°180.0°
N20C29O12P30155.9°90.0°
N20C29C28H4179.7°180.0°
C25O07P01O0922.0°175.0°
C25O07P01O10145.5°55.0°
C25O07P01O11101.3°65.0°
O07C25C23H5168.0°52.7°
O07C25H6H7120.9°120.0°
O07P01O09O10125.6°119.9°
O07P01O09O11122.5°120.0°
O07P01O09P02111.4°165.0°
O07P01O10O11118.6°120.0°
P01O07C25H679.3°60.0°
P01O07C25H741.3°60.0°
O07P01O11H11121.0°60.0°
C27C28C29H4180.0°180.0°
C27C28C29O12179.6°180.0°
C28C29O12P3024.2°90.0°
C29C28C27H8179.9°180.0°
C29O12P30O3247.9°55.0°
C29O12P30O33167.6°65.0°
C29O12P30O3173.7°175.0°
O12C29C28H40.4°0.0°
O14P02O09P01132.9°44.9°
O14P02O09O13127.5°120.0°
O14P02O09O15109.9°120.0°
O14P02O13O15111.9°120.0°
O14P02O13P03152.4°40.0°
O14P02O15H120.0°179.9°
O09P01O10O11118.5°120.1°
P01O09P02O1399.6°164.9°
P01O09P02O1523.0°75.1°
O09P01O11H11117.3°59.9°
P02O09P01O10123.0°45.1°
P02O09P01O1111.2°75.0°
O09P02O13O15121.3°120.0°
O09P02O13P0380.7°160.0°
O09P02O15H12117.1°59.9°
O10P01O11H110.0°180.0°
O12P30O32O33124.3°120.0°
O12P30O32O31125.9°120.0°
O12P30O33O31124.0°120.0°
O12P30O31H15126.5°180.0°
O12P30O33H16125.2°60.0°
P02O13P03O16128.7°45.0°
P02O13P03O1811.1°75.0°
P02O13P03O17109.8°165.0°
O13P02O15H12119.5°60.1°
O15P02O13P0340.6°80.0°
O32P30O33O31110.8°120.0°
O32P30O31H150.0°60.0°
O32P30O33H160.0°179.9°
O13P03O16O18124.7°120.0°
O13P03O16O17127.4°120.0°
O13P03O18O17127.5°120.0°
O13P03O17H13125.4°179.9°
O13P03O18H14123.0°60.0°
O33P30O31H15110.0°60.0°
O31P30O33H16110.8°59.9°
O16P03O18O17109.4°120.0°
O16P03O17H130.0°60.1°
O16P03O18H140.0°180.0°
O18P03O17H13107.5°59.9°
O17P03O18H14109.5°60.0°
H1C21C22H235.9°0.1°
H1C21C23H599.2°146.5°
H1C21O05H956.1°61.2°
H2C22C24H3157.3°146.5°
H2C22O06H1058.2°61.2°
H4C28C27H80.1°0.0°
H5C23C25H648.4°67.3°
H5C23C25H772.3°172.7°

222415

PDB entries from 2024-07-10

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