5ZD

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O06	C05	doub	1.22Å	1.25Å
C05	O07	sing	1.35Å	1.25Å
C05	C04	sing	1.47Å	1.54Å
C09	C08	sing	1.51Å	1.54Å
C09	C10	sing	1.53Å	1.52Å
C04	C08	doub	1.35Å	1.43Å	Aromatic
C04	N03	sing	1.34Å	1.36Å	Aromatic
C11	C10	sing	1.53Å	1.53Å
C11	C12	sing	1.53Å	1.54Å
C08	S15	sing	1.76Å	1.71Å	Aromatic
C12	C13	sing	1.53Å	1.53Å
N03	C02	doub	1.29Å	1.33Å	Aromatic
S15	C02	sing	1.76Å	1.67Å	Aromatic
C02	N01	sing	1.38Å	1.43Å
C13	C14	sing	1.53Å	1.53Å
C10	H1	sing	1.09Å	1.10Å
C10	H2	sing	1.09Å	1.10Å
C12	H3	sing	1.09Å	1.10Å
C12	H4	sing	1.09Å	1.10Å
N01	H5	sing	0.97Å	1.00Å
N01	H6	sing	0.97Å	1.00Å
O07	H7	sing	0.97Å	0.95Å
C09	H8	sing	1.09Å	1.10Å
C09	H9	sing	1.09Å	1.10Å
C11	H10	sing	1.09Å	1.10Å
C11	H11	sing	1.09Å	1.10Å
C13	H12	sing	1.09Å	1.10Å
C13	H13	sing	1.09Å	1.10Å
C14	H14	sing	1.09Å	1.10Å
C14	H15	sing	1.09Å	1.10Å
C14	H16	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O06	C05	O07	117.9°	120.0°
O06	C05	C04	124.6°	120.0°
O07	C05	C04	117.5°	120.0°
C05	O07	H7	109.5°	117.0°
C05	C04	C08	128.3°	122.5°
C05	C04	N03	118.0°	122.5°
C08	C09	C10	102.2°	109.5°
C09	C08	C04	129.0°	125.9°
C09	C08	S15	126.3°	125.9°
C08	C09	H8	111.3°	109.4°
C08	C09	H9	111.2°	109.5°
C09	C10	C11	120.8°	109.5°
C09	C10	H1	106.6°	109.5°
C09	C10	H2	106.6°	109.5°
C10	C09	H8	111.3°	109.5°
C10	C09	H9	111.2°	109.5°
C08	C04	N03	113.7°	115.0°
C04	C08	S15	104.6°	108.2°
C04	N03	C02	116.4°	116.9°
C10	C11	C12	110.6°	109.5°
C11	C10	H1	106.5°	109.5°
C11	C10	H2	106.5°	109.4°
C10	C11	H10	109.1°	109.4°
C10	C11	H11	109.2°	109.4°
C11	C12	C13	115.4°	109.5°
C11	C12	H3	108.0°	109.5°
C11	C12	H4	108.0°	109.5°
C12	C11	H10	109.2°	109.5°
C12	C11	H11	109.2°	109.5°
C08	S15	C02	97.0°	90.2°
C12	C13	C14	110.4°	109.5°
C13	C12	H3	108.0°	109.5°
C13	C12	H4	108.0°	109.5°
C12	C13	H12	109.2°	109.5°
C12	C13	H13	109.3°	109.5°
N03	C02	S15	108.2°	109.6°
N03	C02	N01	126.2°	125.2°
S15	C02	N01	125.5°	125.2°
C02	N01	H5	109.5°	120.0°
C02	N01	H6	109.5°	120.0°
C14	C13	H12	109.2°	109.5°
C14	C13	H13	109.2°	109.5°
C13	C14	H14	109.5°	109.5°
C13	C14	H15	109.4°	109.4°
C13	C14	H16	109.5°	109.5°
H1	C10	H2	109.5°	109.5°
H3	C12	H4	109.5°	109.4°
H5	N01	H6	109.4°	120.0°
H8	C09	H9	109.5°	109.4°
H10	C11	H11	109.5°	109.5°
H12	C13	H13	109.5°	109.5°
H14	C14	H15	109.5°	109.5°
H14	C14	H16	109.4°	109.5°
H15	C14	H16	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O06	C05	O07	C04	179.5°	180.0°
O06	C05	C04	C08	14.2°	0.0°
O06	C05	C04	N03	166.0°	179.7°
O06	C05	O07	H7	0.0°	0.0°
O07	C05	C04	C08	166.4°	180.0°
O07	C05	C04	N03	13.5°	0.3°
C05	C04	C08	C09	1.7°	0.2°
C05	C04	C08	N03	179.8°	179.7°
C05	C04	C08	S15	179.7°	180.0°
C05	C04	N03	C02	179.9°	179.8°
C04	C05	O07	H7	179.5°	180.0°
C08	C09	C10	H8	118.8°	120.0°
C08	C09	C10	H9	118.8°	120.1°
C09	C08	C04	S15	178.0°	179.8°
C09	C08	C04	N03	178.1°	180.0°
C08	C09	C10	C11	177.8°	180.0°
C09	C08	S15	C02	178.3°	179.9°
C08	C09	C10	H1	60.6°	60.0°
C08	C09	C10	H2	56.2°	60.1°
C08	C09	H8	H9	123.4°	120.0°
C10	C09	C08	C04	78.9°	90.0°
C09	C10	C11	H1	121.6°	120.0°
C09	C10	C11	H2	121.6°	120.0°
C09	C10	C11	C12	161.4°	180.0°
C10	C09	C08	S15	98.6°	89.8°
C09	C10	H1	H2	114.9°	120.0°
C10	C09	H8	H9	123.4°	120.0°
C09	C10	C11	H10	78.5°	60.0°
C09	C10	C11	H11	41.2°	60.0°
C08	C04	N03	C02	0.0°	0.1°
C04	C08	S15	C02	0.3°	0.2°
C04	C08	C09	H8	162.2°	30.0°
C04	C08	C09	H9	39.9°	150.0°
N03	C04	C08	S15	0.2°	0.2°
C04	N03	C02	S15	0.2°	0.1°
C04	N03	C02	N01	180.0°	180.0°
C10	C11	C12	H10	120.1°	119.9°
C10	C11	C12	H11	120.2°	120.0°
C10	C11	C12	C13	117.6°	180.0°
C11	C10	H1	H2	114.8°	120.0°
C10	C11	C12	H3	121.6°	60.0°
C10	C11	C12	H4	3.2°	59.9°
C11	C10	C09	H8	59.0°	60.0°
C11	C10	C09	H9	63.4°	60.0°
C10	C11	H10	H11	119.4°	119.9°
C11	C12	C13	H3	120.9°	120.0°
C11	C12	C13	H4	120.8°	120.1°
C11	C12	C13	C14	176.7°	180.0°
C12	C11	C10	H1	39.7°	60.0°
C12	C11	C10	H2	77.0°	60.0°
C11	C12	H3	H4	117.3°	120.0°
C12	C11	H10	H11	119.5°	120.1°
C11	C12	C13	H12	56.6°	60.0°
C11	C12	C13	H13	63.1°	60.0°
C08	S15	C02	N03	0.3°	0.2°
C08	S15	C02	N01	179.9°	180.0°
S15	C08	C09	H8	20.2°	150.2°
S15	C08	C09	H9	142.6°	30.3°
C12	C13	C14	H12	120.1°	120.0°
C12	C13	C14	H13	120.1°	120.0°
C13	C12	H3	H4	117.3°	120.0°
C13	C12	C11	H10	2.5°	60.1°
C13	C12	C11	H11	122.2°	60.0°
C12	C13	H12	H13	119.6°	120.0°
C12	C13	C14	H14	180.0°	60.0°
C12	C13	C14	H15	60.0°	180.0°
C12	C13	C14	H16	60.0°	60.0°
N03	C02	S15	N01	179.8°	179.8°
N03	C02	N01	H5	0.0°	0.1°
N03	C02	N01	H6	120.0°	180.0°
S15	C02	N01	H5	179.8°	179.7°
S15	C02	N01	H6	60.3°	0.3°
C02	N01	H5	H6	120.0°	180.0°
C14	C13	C12	H3	62.4°	60.0°
C14	C13	C12	H4	55.9°	59.9°
C14	C13	H12	H13	119.6°	120.0°
C13	C14	H14	H15	120.0°	120.0°
C13	C14	H14	H16	120.0°	120.0°
C13	C14	H15	H16	120.0°	119.9°
H1	C10	C09	H8	179.4°	60.0°
H1	C10	C09	H9	58.2°	180.0°
H1	C10	C11	H10	159.9°	180.0°
H1	C10	C11	H11	80.4°	60.0°
H2	C10	C09	H8	62.6°	180.0°
H2	C10	C09	H9	175.0°	60.0°
H2	C10	C11	H10	43.1°	60.0°
H2	C10	C11	H11	162.8°	NaN°
H3	C12	C11	H10	118.3°	180.0°
H3	C12	C11	H11	1.4°	60.0°
H3	C12	C13	H12	177.5°	180.0°
H3	C12	C13	H13	57.7°	60.0°
H4	C12	C11	H10	123.4°	60.0°
H4	C12	C11	H11	116.9°	179.9°
H4	C12	C13	H12	64.2°	60.0°
H4	C12	C13	H13	176.0°	180.0°
H12	C13	C14	H14	59.9°	60.0°
H12	C13	C14	H15	179.9°	60.1°
H12	C13	C14	H16	60.1°	180.0°
H13	C13	C14	H14	59.9°	180.0°
H13	C13	C14	H15	60.1°	59.9°
H13	C13	C14	H16	179.9°	60.0°
H14	C14	H15	H16	120.0°	120.0°

Release date:	2023-11-01
Definition date:	2023-01-10
Last modified:	2023-10-27
Release status:	REL
Processing site:	PDBC
Derived from:	8HXV