Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C25sing1.36Å1.36Å
C24C25doub1.39Å1.39ÅAromatic
C24C22sing1.38Å1.39ÅAromatic
C25C23sing1.39Å1.38ÅAromatic
C22C18doub1.38Å1.40ÅAromatic
C23C26sing1.51Å1.50Å
C23C21doub1.38Å1.39ÅAromatic
C18C21sing1.38Å1.40ÅAromatic
C18C16sing1.51Å1.51Å
C16N7sing1.47Å1.47Å
N7C13sing1.47Å1.47Å
N7C12sing1.47Å1.47Å
C13C10sing1.53Å1.52Å
C12C9sing1.53Å1.53Å
C10N4sing1.47Å1.46Å
C9N4sing1.47Å1.46Å
C19C20sing1.53Å1.53Å
C19C17sing1.53Å1.53Å
N4C6sing1.38Å1.41Å
C20C17sing1.53Å1.52Å
C6N3sing1.33Å1.36ÅAromatic
C6N2doub1.32Å1.36ÅAromatic
C17C15sing1.51Å1.50Å
N3C7doub1.33Å1.34ÅAromatic
N2C2sing1.33Å1.36ÅAromatic
C14C15doub1.35Å1.40ÅAromatic
C14C11sing1.40Å1.39ÅAromatic
C15N8sing1.35Å1.35ÅAromatic
C7N5sing1.39Å1.41Å
C7C4sing1.40Å1.41ÅAromatic
C2C4doub1.39Å1.41ÅAromatic
C2C1sing1.49Å1.53Å
O1C1doub1.22Å1.24Å
C11N5sing1.40Å1.37Å
C11N6doub1.31Å1.34ÅAromatic
N8N6sing1.40Å1.41ÅAromatic
C1N1sing1.35Å1.28Å
N1C3sing1.47Å1.48Å
C8C5trip1.17Å1.28Å
C5C3sing1.47Å1.47Å
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C13H5sing1.09Å1.10Å
C13H6sing1.09Å1.10Å
C14H7sing1.08Å1.08Å
C16H8sing1.09Å1.10Å
C16H9sing1.09Å1.10Å
C17H10sing1.09Å1.10Å
C19H11sing1.09Å1.10Å
C19H12sing1.09Å1.10Å
C20H13sing1.09Å1.10Å
C20H14sing1.09Å1.10Å
C21H15sing1.08Å1.08Å
C22H16sing1.08Å1.08Å
C24H17sing1.08Å1.08Å
C26H18sing1.09Å1.10Å
C26H19sing1.09Å1.10Å
C26H20sing1.09Å1.10Å
C3H21sing1.09Å1.10Å
C3H22sing1.09Å1.10Å
C4H23sing1.08Å1.08Å
C8H24sing1.05Å1.06Å
C9H25sing1.09Å1.10Å
C9H26sing1.09Å1.10Å
N1H27sing0.97Å1.00Å
N5H28sing0.97Å1.00Å
O2H31sing0.97Å0.95Å
N8H29sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C25C24120.8°120.0°
O2C25C23118.5°120.1°
C25O2H31109.5°114.0°
C25C24C22120.1°119.9°
C24C25C23120.8°119.8°
C25C24H17120.0°120.0°
C24C22C18119.0°120.1°
C24C22H16120.5°119.9°
C22C24H17119.9°120.1°
C25C23C26120.3°120.0°
C25C23C21119.7°120.0°
C22C18C21120.6°120.1°
C22C18C16120.7°119.9°
C18C22H16120.5°120.0°
C26C23C21120.0°120.0°
C23C26H18109.5°109.5°
C23C26H19109.5°109.5°
C23C26H20109.5°109.4°
C23C21C18119.8°120.0°
C23C21H15120.1°120.0°
C21C18C16118.6°119.9°
C18C21H15120.1°120.0°
C18C16N7109.2°109.5°
C18C16H8109.5°109.5°
C18C16H9109.5°109.5°
C16N7C13111.1°111.0°
C16N7C12110.2°111.0°
N7C16H8109.5°109.5°
N7C16H9109.5°109.4°
C13N7C12106.9°110.9°
N7C13C10109.4°109.4°
N7C13H5109.5°109.5°
N7C13H6109.5°109.5°
N7C12C9107.0°109.4°
N7C12H3110.1°109.5°
N7C12H4110.1°109.5°
C13C10N4107.3°109.4°
C13C10H1110.0°109.5°
C13C10H2110.0°109.5°
C10C13H5109.5°109.5°
C10C13H6109.5°109.5°
C12C9N4107.1°109.4°
C9C12H3110.1°109.4°
C9C12H4110.1°109.5°
C12C9H25110.1°109.5°
C12C9H26110.0°109.5°
C10N4C9121.7°110.9°
C10N4C6118.0°111.0°
N4C10H1110.0°109.5°
N4C10H2110.0°109.5°
C9N4C6120.3°111.0°
N4C9H25110.1°109.5°
N4C9H26110.1°109.5°
C20C19C1759.6°60.0°
C19C20C1760.2°60.0°
C20C19H11120.1°117.5°
C20C19H12120.0°117.5°
C19C20H13120.0°117.5°
C19C20H14120.0°117.5°
C19C17C2060.2°60.0°
C19C17C15113.7°117.5°
C19C17H10119.8°117.5°
C17C19H11120.1°117.5°
C17C19H12120.1°117.5°
N4C6N3118.5°119.1°
N4C6N2120.8°119.1°
C20C17C15107.9°117.5°
C20C17H10120.0°117.5°
C17C20H13119.9°117.6°
C17C20H14120.0°117.5°
N3C6N2120.7°121.8°
C6N3C7121.4°120.8°
C6N2C2120.9°120.9°
C17C15C14118.8°126.1°
C17C15N8129.7°126.0°
C15C17H10120.4°115.5°
N3C7N5121.1°120.4°
N3C7C4118.9°119.1°
N2C2C4118.7°119.1°
N2C2C1119.0°120.4°
C15C14C11101.8°107.9°
C14C15N8111.4°107.9°
C15C14H7129.1°126.1°
C14C11N5128.0°126.0°
C14C11N6114.0°108.1°
C11C14H7129.1°126.1°
C15N8N6107.9°108.0°
C15N8H29126.0°126.0°
N5C7C4119.9°120.5°
C7N5C11128.6°120.1°
C7N5H28115.7°119.9°
C7C4C2119.4°118.3°
C7C4H23120.3°120.8°
C4C2C1122.4°120.4°
C2C4H23120.3°120.9°
C2C1O1118.2°120.0°
C2C1N1120.0°120.0°
O1C1N1121.7°120.0°
N5C11N6118.1°126.0°
C11N5H28115.7°120.0°
C11N6N8104.9°108.2°
N6N8H29126.1°126.0°
C1N1C3130.9°120.0°
C1N1H27114.5°120.0°
N1C3C5107.9°109.5°
N1C3H21109.8°109.5°
N1C3H22109.9°109.4°
C3N1H27114.5°120.0°
C8C5C3176.7°179.9°
C5C8H24180.0°180.0°
C5C3H21109.9°109.5°
C5C3H22109.9°109.5°
H1C10H2109.5°109.5°
H3C12H4109.5°109.5°
H5C13H6109.5°109.5°
H8C16H9109.5°109.5°
H11C19H12109.4°115.6°
H13C20H14109.5°115.5°
H18C26H19109.5°109.5°
H18C26H20109.5°109.4°
H19C26H20109.4°109.5°
H21C3H22109.5°109.4°
H25C9H26109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C25C24C23179.4°179.2°
O2C25C24C22179.8°180.0°
O2C25C23C260.6°0.3°
O2C25C23C21179.9°179.7°
O2C25C24H170.2°0.8°
C25C24C22H17180.0°179.2°
C25C24C22C180.4°0.6°
C24C25C23C26179.9°179.5°
C24C25C23C210.7°0.5°
C25C24C22H16179.6°179.5°
C24C25O2H31180.0°90.1°
C22C24C25C230.4°0.8°
C24C22C18H16180.0°179.9°
C24C22C18C210.8°0.0°
C24C22C18C16180.0°179.7°
C25C23C26C21179.2°180.0°
C25C23C21C181.1°0.0°
C25C23C21H15178.9°179.9°
C23C25C24H17179.6°180.0°
C25C23C26H1889.6°90.1°
C25C23C26H19150.4°29.9°
C25C23C26H2030.4°150.0°
C23C25O2H310.6°90.7°
C22C18C21C231.1°0.3°
C22C18C21C16179.3°179.8°
C22C18C16N769.4°90.3°
C22C18C16H8170.6°29.8°
C22C18C16H950.5°149.7°
C22C18C21H15178.9°179.8°
C18C22C24H17179.6°179.8°
C26C23C21C18179.7°180.0°
C26C23C21H150.3°0.1°
C23C26H18H19120.0°120.0°
C23C26H18H20120.0°119.9°
C23C26H19H20120.0°120.0°
C23C21C18H15180.0°179.9°
C23C21C18C16179.6°180.0°
C21C23C26H1889.6°90.0°
C21C23C26H1930.4°150.0°
C21C23C26H20150.4°30.0°
C21C18C16N7111.3°90.0°
C21C18C16H88.7°150.0°
C21C18C16H9128.7°30.0°
C21C18C22H16179.2°179.9°
C18C16N7H8120.0°120.0°
C18C16N7H9120.0°120.0°
C18C16N7C1352.2°170.0°
C18C16N7C12170.5°66.2°
C18C16H8H9120.1°120.0°
C16C18C21H150.4°0.1°
C16C18C22H160.0°0.2°
C16N7C13C12120.2°123.9°
C16N7C13C10170.2°176.8°
C16N7C12C9167.5°176.8°
C16N7C12H372.9°56.8°
C16N7C12H447.9°63.2°
C16N7C13H550.2°63.3°
C16N7C13H669.8°56.8°
N7C16H8H9120.1°120.0°
N7C13C10H5120.0°119.9°
N7C13C10H6120.0°120.0°
C13N7C12C971.7°59.3°
N7C13C10N452.3°58.4°
N7C13C10H167.4°61.6°
N7C13C10H2171.9°178.4°
C13N7C12H347.9°179.2°
C13N7C12H4168.7°60.7°
N7C13H5H6120.0°120.1°
C13N7C16H867.8°49.9°
C13N7C16H9172.2°70.0°
C12N7C13C1069.5°59.3°
N7C12C9H3119.6°120.0°
N7C12C9H4119.6°120.0°
N7C12C9N457.6°58.4°
N7C12H3H4121.1°120.1°
C12N7C13H5170.5°60.6°
C12N7C13H650.4°179.3°
C12N7C16H850.5°173.8°
C12N7C16H969.6°53.8°
N7C12C9H25177.2°178.4°
N7C12C9H2662.1°61.5°
C13C10N4H1119.7°120.0°
C13C10N4H2119.6°120.0°
C13C10N4C944.7°59.3°
C13C10N4C6137.2°176.8°
C13C10H1H2121.0°120.0°
C10C13H5H6120.1°120.1°
C12C9N4C1047.8°59.3°
C12C9N4H25119.6°120.0°
C12C9N4H26119.6°119.9°
C12C9N4C6134.2°176.8°
C9C12H3H4121.2°120.0°
C12C9H25H26121.1°120.1°
C10N4C9C6178.1°123.9°
C10N4C6N327.2°180.0°
C10N4C6N2152.1°0.7°
N4C10H1H2121.0°120.1°
N4C10C13H5172.2°61.5°
N4C10C13H667.7°178.4°
C10N4C9H25167.4°179.3°
C10N4C9H2671.8°60.6°
C9N4C6N3154.6°56.2°
C9N4C6N226.1°123.1°
C9N4C10H174.9°60.7°
C9N4C10H2164.4°179.3°
N4C9C12H362.0°178.4°
N4C9C12H4177.2°61.6°
N4C9H25H26121.1°120.0°
C20C19C17H11109.4°107.5°
C20C19C17H12109.3°107.5°
C19C20C17H13109.5°107.5°
C19C20C17H14109.5°107.4°
C20C19C17C1597.7°107.5°
C20C19C17H10109.6°107.5°
C20C19H11H12144.9°145.7°
C19C20H13H14144.6°145.6°
C19C17C15H10152.5°145.7°
C19C17C15C1438.0°145.1°
C19C17C15N8144.5°34.9°
C17C19H11H12145.0°145.7°
N4C6N3N2179.3°179.2°
N4C6N3C7179.5°180.0°
N4C6N2C2178.9°179.8°
C6N4C10H1103.2°63.2°
C6N4C10H217.5°56.8°
C6N4C9H2514.5°56.8°
C6N4C9H26106.2°63.2°
C20C17C15H10142.9°145.7°
C20C17C15C14102.6°146.2°
C20C17C15N879.9°33.8°
C17C20H13H14144.6°145.8°
N3C6N2C20.4°0.5°
C6N3C7N5178.3°179.5°
C6N3C7C40.9°0.5°
N2C6N3C70.2°0.8°
C6N2C2C40.3°0.0°
C6N2C2C1179.0°179.8°
C17C15C14N8178.0°180.0°
C17C15C14C11178.5°180.0°
C17C15N8N6178.7°179.8°
C17C15C14H71.5°0.0°
C15C17C19H11152.9°0.0°
C15C17C19H1211.6°145.0°
C15C17C20H131.9°145.0°
C15C17C20H14142.8°0.1°
C17C15N8H291.3°0.0°
N3C7N5C4177.4°179.9°
N3C7C4C20.9°0.0°
N3C7N5C1115.3°5.0°
N3C7C4H23179.0°180.0°
N3C7N5H28164.8°175.0°
N2C2C4C70.4°0.3°
N2C2C4C1178.7°179.7°
N2C2C1O117.9°179.4°
N2C2C1N1159.7°0.2°
N2C2C4H23179.6°179.8°
C15C14C11H7180.0°179.9°
C15C14C11N5179.4°180.0°
C15C14C11N60.1°0.2°
C14C15N8N61.0°0.2°
C14C15C17H10114.5°0.6°
C14C15N8H29179.0°180.0°
C11C14C15N80.5°0.0°
C14C11N5C71.7°6.0°
C14C11N5N6179.5°179.8°
C14C11N6N80.7°0.3°
C14C11N5H28178.3°173.9°
C15N8N6C111.0°0.4°
C15N8N6H29180.0°179.8°
N8C15C14H7179.5°179.9°
N8C15C17H1063.1°179.4°
N5C7C4C2178.4°180.0°
C7N5C11H28180.0°180.0°
C7N5C11N6178.8°174.2°
N5C7C4H231.5°0.0°
C7C4C2H23180.0°180.0°
C7C4C2C1178.3°180.0°
C4C7N5C11167.3°175.0°
C4C7N5H2812.7°5.0°
C4C2C1O1163.3°0.3°
C4C2C1N119.0°180.0°
C2C1O1N1177.6°179.7°
C2C1N1C3178.7°180.0°
C1C2C4H231.7°0.0°
C2C1N1H271.3°0.1°
O1C1N1C31.1°0.3°
O1C1N1H27178.9°179.7°
N5C11N6N8178.9°179.8°
N5C11C14H70.6°0.1°
N6C11C14H7179.9°179.7°
N6C11N5H281.2°5.9°
C11N6N8H29179.0°179.9°
C1N1C3H27180.0°180.0°
C1N1C3C545.7°180.0°
C1N1C3H2174.1°60.0°
C1N1C3H22165.5°60.0°
N1C3C5C8177.2°57.2°
N1C3C5H21119.8°120.0°
N1C3C5H22119.8°120.0°
N1C3H21H22120.7°119.9°
C8C5C3H2157.4°177.2°
C8C5C3H2263.1°62.9°
C5C3H21H22120.7°120.0°
C3C5C8H2460.5°176.8°
C5C3N1H27134.3°0.0°
H1C10C13H552.5°178.5°
H1C10C13H6172.6°58.4°
H2C10C13H568.1°58.5°
H2C10C13H651.9°61.6°
H3C12C9H2557.6°61.6°
H3C12C9H26178.3°58.4°
H4C12C9H2563.2°58.4°
H4C12C9H2657.5°178.5°
H10C17C19H110.3°145.0°
H10C17C19H12141.0°0.0°
H10C17C20H13141.2°0.0°
H10C17C20H140.3°145.0°
H11C19C20H13141.1°144.9°
H11C19C20H140.1°0.0°
H12C19C20H130.1°0.1°
H12C19C20H14141.1°145.0°
H16C22C24H170.4°0.3°
H18C26H19H20120.0°120.0°
H21C3N1H27106.0°120.0°
H22C3N1H2714.5°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon