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5YM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C01C02sing1.53Å1.50Å
C05C06sing1.53Å1.50Å
C05C04sing1.53Å1.50Å
C06C07sing1.53Å1.47Å
C02C03sing1.53Å1.49Å
C03C04sing1.53Å1.48Å
C07C08sing1.53Å1.47Å
C08C09sing1.51Å1.48Å
C09C10doub1.31Å1.28Å
C11C10sing1.51Å1.49Å
C11C12sing1.53Å1.51Å
C12C13sing1.53Å1.51Å
C13C14sing1.53Å1.51Å
C14C15sing1.53Å1.50Å
C15C16sing1.53Å1.51Å
C17C16sing1.53Å1.51Å
C17C18sing1.51Å1.51Å
C18N20sing1.35Å1.44Å
C18O19doub1.21Å1.18Å
O23C22sing1.43Å1.36Å
N20C21sing1.46Å1.40Å
C22C21sing1.53Å1.50Å
C13H1sing1.09Å1.10Å
C13H2sing1.09Å1.10Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C11H5sing1.09Å1.10Å
C11H6sing1.09Å1.10Å
C10H7sing1.08Å1.08Å
C14H8sing1.09Å1.10Å
C14H9sing1.09Å1.10Å
C15H10sing1.09Å1.10Å
C15H11sing1.09Å1.10Å
C21H12sing1.09Å1.10Å
C21H13sing1.09Å1.10Å
C16H14sing1.09Å1.10Å
C16H15sing1.09Å1.10Å
C17H16sing1.09Å1.10Å
C17H17sing1.09Å1.10Å
C22H18sing1.09Å1.10Å
C22H19sing1.09Å1.10Å
C01H20sing1.09Å1.10Å
C01H21sing1.09Å1.10Å
C01H22sing1.09Å1.10Å
C02H23sing1.09Å1.10Å
C02H24sing1.09Å1.10Å
C03H25sing1.09Å1.10Å
C03H26sing1.09Å1.10Å
C04H27sing1.09Å1.10Å
C04H28sing1.09Å1.10Å
C05H29sing1.09Å1.10Å
C05H30sing1.09Å1.10Å
C06H31sing1.09Å1.10Å
C06H32sing1.09Å1.10Å
C07H33sing1.09Å1.10Å
C07H34sing1.09Å1.10Å
C08H35sing1.09Å1.10Å
C08H36sing1.09Å1.10Å
C09H37sing1.08Å1.08Å
N20H38sing0.97Å1.00Å
O23H39sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C01C02C03110.0°109.5°
C02C01H20109.5°109.5°
C02C01H21109.5°109.5°
C02C01H22109.5°109.5°
C01C02H23109.3°109.5°
C01C02H24109.3°109.5°
C06C05C04108.6°109.4°
C05C06C07111.3°109.5°
C06C05H29109.7°109.5°
C06C05H30109.7°109.4°
C05C06H31109.0°109.5°
C05C06H32109.0°109.4°
C05C04C03110.3°109.4°
C05C04H27109.2°109.5°
C05C04H28109.3°109.5°
C04C05H29109.7°109.5°
C04C05H30109.7°109.5°
C06C07C08108.3°109.5°
C07C06H31109.0°109.5°
C07C06H32109.0°109.5°
C06C07H33109.8°109.5°
C06C07H34109.7°109.4°
C02C03C04109.7°109.5°
C03C02H23109.3°109.4°
C03C02H24109.3°109.5°
C02C03H25109.4°109.4°
C02C03H26109.4°109.5°
C04C03H25109.4°109.4°
C04C03H26109.4°109.5°
C03C04H27109.3°109.4°
C03C04H28109.3°109.5°
C07C08C09105.0°109.5°
C08C07H33109.8°109.5°
C08C07H34109.8°109.4°
C07C08H35110.6°109.5°
C07C08H36110.6°109.5°
C08C09C10119.1°120.1°
C09C08H35110.6°109.4°
C09C08H36110.5°109.5°
C08C09H37120.5°120.0°
C09C10C11120.5°119.9°
C09C10H7119.7°120.1°
C10C09H37120.4°119.9°
C10C11C12106.0°109.5°
C10C11H5110.3°109.5°
C10C11H6110.3°109.5°
C11C10H7119.8°120.0°
C11C12C13115.0°109.5°
C11C12H3108.1°109.5°
C11C12H4108.1°109.4°
C12C11H5110.4°109.5°
C12C11H6110.3°109.4°
C12C13C14108.3°109.4°
C12C13H1109.8°109.4°
C12C13H2109.8°109.5°
C13C12H3108.0°109.5°
C13C12H4108.1°109.4°
C13C14C15111.6°109.5°
C14C13H1109.8°109.5°
C14C13H2109.8°109.5°
C13C14H8109.0°109.5°
C13C14H9108.9°109.5°
C14C15C16109.1°109.5°
C15C14H8108.9°109.4°
C15C14H9108.9°109.4°
C14C15H10109.5°109.5°
C14C15H11109.5°109.5°
C15C16C17112.2°109.5°
C16C15H10109.6°109.4°
C16C15H11109.6°109.4°
C15C16H14108.8°109.4°
C15C16H15108.8°109.5°
C16C17C18116.1°109.5°
C17C16H14108.8°109.5°
C17C16H15108.8°109.4°
C16C17H16107.8°109.5°
C16C17H17107.8°109.4°
C17C18N20116.9°120.0°
C17C18O19119.6°120.0°
C18C17H16107.8°109.5°
C18C17H17107.8°109.5°
N20C18O19123.5°120.0°
C18N20C21122.8°120.1°
C18N20H38118.6°120.0°
O23C22C21109.8°109.5°
O23C22H18109.4°109.5°
O23C22H19109.4°109.5°
C22O23H39109.5°114.0°
N20C21C22111.2°109.5°
N20C21H12109.0°109.4°
N20C21H13109.0°109.4°
C21N20H38118.6°120.0°
C22C21H12109.0°109.5°
C22C21H13109.1°109.5°
C21C22H18109.4°109.5°
C21C22H19109.4°109.5°
H1C13H2109.4°109.5°
H3C12H4109.5°109.5°
H5C11H6109.5°109.5°
H8C14H9109.5°109.5°
H10C15H11109.5°109.5°
H12C21H13109.5°109.5°
H14C16H15109.5°109.5°
H16C17H17109.5°109.5°
H18C22H19109.5°109.4°
H20C01H21109.5°109.5°
H20C01H22109.5°109.4°
H21C01H22109.4°109.5°
H23C02H24109.5°109.5°
H25C03H26109.5°109.5°
H27C04H28109.5°109.6°
H29C05H30109.5°109.5°
H31C06H32109.5°109.5°
H33C07H34109.4°109.5°
H35C08H36109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C01C02C03H23120.1°120.0°
C01C02C03H24120.1°120.0°
C01C02C03C04145.9°180.0°
C02C01H20H21120.0°120.0°
C02C01H20H22120.0°120.0°
C02C01H21H22120.0°120.0°
C01C02H23H24119.8°120.0°
C01C02C03H2594.1°60.0°
C01C02C03H2625.9°60.0°
C06C05C04H29119.9°120.0°
C06C05C04H30119.9°119.9°
C05C06C07H31120.3°120.0°
C05C06C07H32120.2°119.9°
C06C05C04C03168.3°180.0°
C05C06C07C08174.4°180.0°
C06C05C04H2748.2°60.0°
C06C05C04H2871.6°60.1°
C06C05H29H30120.4°120.0°
C05C06H31H32119.2°119.9°
C05C06C07H3365.8°60.0°
C05C06C07H3454.5°60.1°
C04C05C06C0731.5°180.0°
C05C04C03C02117.1°180.0°
C05C04C03H27120.1°119.9°
C05C04C03H28120.1°120.0°
C05C04C03H25122.9°60.0°
C05C04C03H262.9°59.9°
C05C04H27H28119.6°120.1°
C04C05H29H30120.4°120.0°
C04C05C06H31151.8°60.0°
C04C05C06H3288.7°60.0°
C06C07C08H33119.8°120.1°
C06C07C08H34119.8°120.0°
C06C07C08C09141.1°180.0°
C07C06C05H29151.4°60.0°
C07C06C05H3088.3°60.1°
C07C06H31H32119.2°120.0°
C06C07H33H34120.5°120.0°
C06C07C08H3599.6°60.0°
C06C07C08H3621.8°60.0°
C02C03C04H25120.0°119.9°
C02C03C04H26120.0°120.1°
C03C02C01H20180.0°60.0°
C03C02C01H2160.0°180.0°
C03C02C01H2260.0°59.9°
C03C02H23H24119.7°120.0°
C02C03H25H26119.9°120.0°
C02C03C04H27122.8°60.1°
C02C03C04H283.0°60.0°
C04C03C02H2325.8°60.1°
C04C03C02H2494.0°59.9°
C04C03H25H26119.9°120.0°
C03C04H27H28119.7°120.0°
C03C04C05H2971.8°60.1°
C03C04C05H3048.4°60.0°
C07C08C09H35119.3°120.0°
C07C08C09H36119.3°120.1°
C07C08C09C10109.9°126.3°
C08C07C06H3154.1°60.0°
C08C07C06H3265.4°60.0°
C08C07H33H34120.5°120.0°
C07C08H35H36122.1°120.0°
C07C08C09H3770.1°53.7°
C08C09C10H37180.0°180.0°
C08C09C10C110.1°7.5°
C08C09C10H7179.9°172.5°
C09C08C07H3321.2°60.0°
C09C08C07H3499.1°60.0°
C09C08H35H36122.0°120.0°
C09C10C11H7180.0°180.0°
C09C10C11C12179.2°127.6°
C09C10C11H561.3°7.6°
C09C10C11H659.8°112.4°
C10C09C08H359.4°6.3°
C10C09C08H36130.8°113.6°
C10C11C12H5119.4°120.1°
C10C11C12H6119.4°120.0°
C10C11C12C13153.0°180.0°
C10C11C12H386.2°60.0°
C10C11C12H432.2°60.1°
C10C11H5H6121.6°120.0°
C11C10C09H37179.9°172.4°
C11C12C13H3120.8°120.0°
C11C12C13H4120.8°119.9°
C11C12C13C14162.1°180.0°
C11C12C13H142.3°60.0°
C11C12C13H278.1°59.9°
C11C12H3H4117.5°120.0°
C12C11H5H6121.6°120.0°
C12C11C10H70.8°52.3°
C12C13C14H1119.8°119.9°
C12C13C14H2119.8°120.0°
C12C13C14C15153.1°180.0°
C12C13H1H2120.5°120.0°
C13C12H3H4117.5°120.0°
C13C12C11H533.5°59.9°
C13C12C11H687.6°60.0°
C12C13C14H832.8°60.0°
C12C13C14H986.6°60.0°
C13C14C15H8120.3°120.0°
C13C14C15H9120.3°120.0°
C13C14C15C16161.0°180.0°
C14C13H1H2120.5°120.1°
C14C13C12H377.1°60.0°
C14C13C12H441.3°60.1°
C13C14H8H9119.1°120.0°
C13C14C15H1041.1°60.0°
C13C14C15H1179.0°60.0°
C14C15C16H10119.9°120.0°
C14C15C16H11119.9°120.0°
C14C15C16C17132.7°180.0°
C15C14C13H187.0°60.1°
C15C14C13H233.3°60.0°
C15C14H8H9119.0°120.0°
C14C15H10H11120.1°120.0°
C14C15C16H14106.9°60.0°
C14C15C16H1512.3°60.0°
C15C16C17H14120.4°120.0°
C15C16C17H15120.4°120.0°
C15C16C17C18172.1°180.0°
C16C15C14H878.7°60.0°
C16C15C14H940.7°60.0°
C16C15H10H11120.2°119.9°
C15C16H14H15118.8°120.0°
C15C16C17H1666.9°59.9°
C15C16C17H1751.2°60.0°
C16C17C18H16121.0°120.0°
C16C17C18H17121.0°119.9°
C16C17C18N2091.0°180.0°
C16C17C18O1990.8°0.1°
C17C16C15H1012.8°60.0°
C17C16C15H11107.3°60.0°
C17C16H14H15118.7°120.0°
C16C17H16H17117.0°119.9°
C17C18N20O19178.2°179.9°
C17C18N20C21176.2°180.0°
C18C17C16H1451.7°60.0°
C18C17C16H1567.4°60.1°
C18C17H16H17117.0°120.0°
C17C18N20H383.8°0.0°
C18N20C21H38180.0°180.0°
C18N20C21C2263.0°180.0°
C18N20C21H1257.2°60.0°
C18N20C21H13176.7°60.0°
N20C18C17H1630.0°60.0°
N20C18C17H17148.0°60.1°
O19C18N20C211.9°0.1°
O19C18C17H16148.3°120.0°
O19C18C17H1730.2°120.0°
O19C18N20H38178.1°179.9°
O23C22C21N2052.6°65.1°
O23C22C21H18120.0°120.0°
O23C22C21H19120.1°120.1°
O23C22C21H12172.9°175.0°
O23C22C21H1367.6°54.9°
O23C22H18H19119.9°120.0°
N20C21C22H12120.2°119.9°
N20C21C22H13120.3°120.0°
N20C21H12H13119.2°119.9°
N20C21C22H18172.6°175.0°
N20C21C22H1967.4°55.0°
C22C21H12H13119.2°120.1°
C21C22H18H19119.9°120.0°
C22C21N20H38117.0°0.0°
C21C22O23H39180.0°180.0°
H1C13C12H3163.1°60.0°
H1C13C12H478.6°180.0°
H1C13C14H8152.7°179.9°
H1C13C14H933.2°59.9°
H2C13C12H342.7°180.0°
H2C13C12H4161.1°60.0°
H2C13C14H887.0°60.0°
H2C13C14H9153.6°180.0°
H3C12C11H5154.3°180.0°
H3C12C11H633.2°60.0°
H4C12C11H587.3°60.0°
H4C12C11H6151.6°179.9°
H5C11C10H7118.7°172.4°
H6C11C10H7120.2°67.6°
H7C10C09H370.1°7.6°
H8C14C15H10161.4°180.0°
H8C14C15H1141.3°60.0°
H9C14C15H1079.2°60.0°
H9C14C15H11160.7°180.0°
H10C15C16H14133.2°180.0°
H10C15C16H15107.6°60.0°
H11C15C16H1413.1°60.1°
H11C15C16H15132.3°179.9°
H12C21C22H1867.1°55.1°
H12C21C22H1952.8°64.9°
H12C21N20H38122.8°120.0°
H13C21C22H1852.4°65.0°
H13C21C22H19172.3°175.0°
H13C21N20H383.3°120.0°
H14C16C17H16172.7°180.0°
H14C16C17H1769.2°60.0°
H15C16C17H1653.5°60.0°
H15C16C17H17171.6°180.0°
H18C22O23H3959.9°60.0°
H19C22O23H3960.0°60.0°
H20C01H21H22120.0°119.9°
H20C01C02H2359.9°180.0°
H20C01C02H2459.9°60.0°
H21C01C02H2360.1°60.0°
H21C01C02H24180.0°60.0°
H22C01C02H23180.0°60.0°
H22C01C02H2460.1°180.0°
H23C02C03H25145.9°180.0°
H23C02C03H2694.2°60.0°
H24C02C03H2526.0°60.0°
H24C02C03H26146.0°180.0°
H25C03C04H272.8°180.0°
H25C03C04H28117.0°59.9°
H26C03C04H27117.2°60.0°
H26C03C04H28123.0°179.9°
H27C04C05H29168.0°180.0°
H27C04C05H3071.7°59.9°
H28C04C05H2948.3°59.9°
H28C04C05H30168.6°180.0°
H29C05C06H3188.3°180.0°
H29C05C06H3231.1°60.0°
H30C05C06H3131.9°60.0°
H30C05C06H32151.4°180.0°
H31C06C07H33173.9°180.0°
H31C06C07H3465.8°60.0°
H32C06C07H3354.4°60.0°
H32C06C07H34174.8°180.0°
H33C07C08H35140.6°180.0°
H33C07C08H3698.0°60.1°
H34C07C08H3520.2°60.0°
H34C07C08H36141.6°179.9°
H35C08C09H37170.7°173.7°
H36C08C09H3749.3°66.4°

222415

PDB entries from 2024-07-10

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