Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O04C31sing1.43Å1.43Å
C31C30sing1.51Å1.41Å
C30C02doub1.31Å1.40Å
O01C01sing1.43Å1.44Å
C02C01sing1.51Å1.56Å
C02C03sing1.51Å1.56Å
C01C10sing1.53Å1.56Å
C03O02sing1.43Å1.41Å
C03C04sing1.53Å1.54Å
C10C05sing1.51Å1.56Å
C04C05sing1.51Å1.56Å
C05C06doub1.33Å1.40Å
C06C07sing1.47Å1.43Å
C07C08doub1.33Å1.41Å
C08C14sing1.50Å1.58Å
C08C09sing1.51Å1.56Å
C15C14sing1.53Å1.53Å
C15C16sing1.53Å1.55Å
C28C26sing1.53Å1.54Å
C14C13sing1.55Å1.56Å
C18C13sing1.53Å1.58Å
C09C11sing1.53Å1.55Å
C16C17doub1.33Å1.37Å
C26C24sing1.53Å1.58Å
C13C17sing1.48Å1.55Å
C13C12sing1.50Å1.57Å
C11C12sing1.54Å1.57Å
C17C20sing1.51Å1.58Å
C23C24sing1.53Å1.55Å
C23S22sing1.81Å1.84Å
C24O03sing1.43Å1.43Å
C24C27sing1.53Å1.56Å
C29C27sing1.53Å1.56Å
C20S22sing1.81Å1.85Å
C20C21sing1.53Å1.54Å
C12H1sing1.09Å1.10Å
C12H2sing1.09Å1.10Å
C14H3sing1.09Å1.10Å
C15H4sing1.09Å1.10Å
C15H5sing1.09Å1.10Å
C16H6sing1.08Å1.08Å
C21H8sing1.09Å1.10Å
C21H9sing1.09Å1.10Å
C21H10sing1.09Å1.10Å
C23H11sing1.09Å1.10Å
C23H12sing1.09Å1.10Å
C29H13sing1.09Å1.10Å
C29H14sing1.09Å1.10Å
C29H15sing1.09Å1.10Å
C27H16sing1.09Å1.10Å
C27H17sing1.09Å1.10Å
C26H18sing1.09Å1.10Å
C26H19sing1.09Å1.10Å
C28H20sing1.09Å1.10Å
C28H21sing1.09Å1.10Å
C28H22sing1.09Å1.10Å
O03H23sing0.97Å0.95Å
C20H24sing1.09Å1.10Å
C18H26sing1.09Å1.10Å
C18H27sing1.09Å1.10Å
C18H28sing1.09Å1.10Å
C11H29sing1.09Å1.10Å
C11H30sing1.09Å1.10Å
C09H31sing1.09Å1.10Å
C09H32sing1.09Å1.10Å
C07H33sing1.08Å1.08Å
C06H34sing1.08Å1.08Å
C10H35sing1.09Å1.10Å
C10H36sing1.09Å1.10Å
C01H37sing1.09Å1.10Å
O01H38sing0.97Å0.95Å
C04H39sing1.09Å1.10Å
C04H40sing1.09Å1.10Å
C03H41sing1.09Å1.10Å
O02H42sing0.97Å0.95Å
C30H43sing1.08Å1.08Å
C31H44sing1.09Å1.10Å
C31H45sing1.09Å1.10Å
O04H46sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O04C31C30111.1°109.5°
O04C31H44109.1°109.5°
O04C31H45109.1°109.4°
C31O04H46109.5°114.0°
C31C30C02128.4°120.0°
C31C30H43115.8°120.0°
C30C31H44109.1°109.5°
C30C31H45109.1°109.5°
C30C02C01121.5°120.5°
C30C02C03121.2°120.7°
C02C30H43115.8°120.0°
O01C01C02112.0°109.8°
O01C01C10109.0°109.6°
O01C01H37109.7°109.6°
C01O01H38109.5°114.0°
C01C02C03117.3°118.7°
C02C01C10109.9°108.6°
C02C01H37108.1°109.6°
C02C03O02109.1°109.5°
C02C03C04110.3°108.7°
C02C03H41109.0°109.9°
C01C10C05114.1°108.6°
C01C10H35108.3°109.6°
C01C10H36108.3°109.7°
C10C01H37108.1°109.6°
O02C03C04108.4°109.6°
O02C03H41111.0°109.6°
C03O02H42109.5°114.0°
C03C04C05113.2°108.6°
C03C04H39108.5°109.6°
C03C04H40108.5°109.8°
C04C03H41109.1°109.6°
C10C05C04119.7°118.8°
C10C05C06123.5°120.6°
C05C10H35108.3°109.6°
C05C10H36108.3°109.6°
C04C05C06116.8°120.5°
C05C04H39108.6°109.6°
C05C04H40108.5°109.6°
C05C06C07126.2°120.0°
C05C06H34116.9°120.0°
C06C07C08123.9°120.0°
C06C07H33118.0°120.0°
C07C06H34116.9°120.0°
C07C08C14125.3°122.9°
C07C08C09123.8°121.8°
C08C07H33118.0°120.0°
C14C08C09111.0°115.3°
C08C14C15119.3°118.3°
C08C14C13107.1°104.3°
C08C14H3108.8°111.5°
C08C09C11112.8°111.1°
C08C09H31108.6°109.5°
C08C09H32108.6°108.6°
C14C15C1696.5°102.5°
C15C14C13102.7°98.2°
C15C14H3109.4°111.5°
C14C15H4112.6°110.8°
C14C15H5112.6°110.9°
C15C16C17109.9°110.4°
C16C15H4112.6°110.8°
C16C15H5112.6°110.8°
C15C16H6125.0°124.8°
C28C26C24121.1°109.4°
C28C26H18106.5°109.5°
C28C26H19106.5°109.5°
C26C28H20109.5°109.5°
C26C28H21109.5°109.5°
C26C28H22109.4°109.4°
C14C13C18118.7°105.9°
C14C13C1796.3°104.2°
C14C13C12107.2°108.5°
C13C14H3109.1°112.0°
C18C13C17107.3°107.1°
C18C13C12110.0°107.2°
C13C18H26109.5°109.5°
C13C18H27109.5°109.4°
C13C18H28109.5°109.5°
C09C11C12113.0°112.1°
C09C11H29108.6°108.9°
C09C11H30108.6°108.9°
C11C09H31108.6°109.2°
C11C09H32108.7°109.2°
C16C17C13109.5°108.6°
C16C17C20127.0°125.7°
C17C16H6125.0°124.8°
C26C24C23108.0°109.4°
C26C24O03107.8°109.4°
C26C24C27115.0°109.5°
C24C26H18106.5°109.4°
C24C26H19106.5°109.5°
C17C13C12117.1°122.8°
C13C17C20123.6°125.7°
C13C12C11112.8°107.5°
C13C12H1108.6°109.9°
C13C12H2108.6°109.9°
C11C12H1108.7°109.9°
C11C12H2108.7°109.9°
C12C11H29108.6°109.0°
C12C11H30108.6°109.0°
C17C20S22112.8°109.5°
C17C20C21109.4°109.4°
C17C20H24108.6°109.5°
C24C23S22116.6°109.4°
C23C24O03108.3°109.5°
C23C24C27109.2°109.5°
C24C23H11107.7°109.5°
C24C23H12107.7°109.5°
C23S22C20103.5°103.0°
S22C23H11107.6°109.5°
S22C23H12107.7°109.5°
O03C24C27108.4°109.5°
C24O03H23109.5°113.9°
C24C27C29120.6°109.5°
C24C27H16106.6°109.5°
C24C27H17106.6°109.4°
C27C29H13109.5°109.4°
C27C29H14109.5°109.5°
C27C29H15109.5°109.5°
C29C27H16106.6°109.5°
C29C27H17106.6°109.5°
S22C20C21111.0°109.4°
S22C20H24105.8°109.5°
C20C21H8109.5°109.5°
C20C21H9109.5°109.4°
C20C21H10109.4°109.4°
C21C20H24109.1°109.5°
H1C12H2109.5°109.9°
H4C15H5109.5°110.8°
H8C21H9109.4°109.5°
H8C21H10109.5°109.5°
H9C21H10109.5°109.5°
H11C23H12109.5°109.5°
H13C29H14109.4°109.5°
H13C29H15109.4°109.4°
H14C29H15109.5°109.5°
H16C27H17109.5°109.5°
H18C26H19109.5°109.5°
H20C28H21109.5°109.5°
H20C28H22109.5°109.5°
H21C28H22109.5°109.5°
H26C18H27109.5°109.5°
H26C18H28109.5°109.5°
H27C18H28109.5°109.4°
H29C11H30109.5°108.9°
H31C09H32109.5°109.2°
H35C10H36109.5°109.6°
H39C04H40109.5°109.6°
H44C31H45109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O04C31C30H44120.2°120.0°
O04C31C30H45120.2°120.0°
O04C31C30C02170.8°133.6°
O04C31C30H439.2°46.4°
O04C31H44H45119.3°120.0°
C31C30C02H43180.0°180.0°
C31C30C02C01180.0°7.3°
C31C30C02C030.2°172.4°
C30C31H44H45119.3°120.0°
C30C31O04H46180.0°180.0°
C30C02C01O015.1°115.5°
C30C02C01C03179.8°179.7°
C30C02C01C10126.5°124.7°
C30C02C03O02116.6°5.0°
C30C02C03C04124.5°124.6°
C30C02C01H37115.8°5.0°
C30C02C03H414.7°115.4°
C02C30C31H4469.0°106.4°
C02C30C31H4550.6°13.6°
O01C01C02C10121.4°119.8°
O01C01C02H37120.9°120.5°
O01C01C02C03174.7°64.2°
O01C01C10H37119.2°120.4°
O01C01C10C05165.3°70.4°
O01C01C10H3544.6°169.8°
O01C01C10H3674.1°49.4°
C02C01C10H37117.7°119.7°
C01C02C03O0263.6°175.3°
C01C02C03C0455.3°55.7°
C02C01C10C0542.1°49.4°
C02C01C10H3578.5°70.3°
C02C01C10H36162.8°169.3°
C02C01O01H38180.0°179.2°
C01C02C03H41175.1°64.3°
C01C02C30H430.0°172.7°
C03C02C01C1053.3°55.6°
C02C03O02C04120.2°119.1°
C02C03O02H41120.1°120.6°
C02C03C04H41119.7°120.1°
C02C03C04C0545.2°49.6°
C03C02C01H3764.4°175.3°
C02C03C04H39165.8°169.3°
C02C03C04H4075.3°70.2°
C02C03O02H42180.0°179.1°
C03C02C30H43179.8°7.6°
C01C10C05H35120.7°119.7°
C01C10C05H36120.7°119.9°
C01C10C05C0438.8°55.0°
C01C10C05C06141.6°124.7°
C01C10H35H36117.9°120.5°
C10C01O01H3858.2°60.0°
O02C03C04H41121.0°120.3°
O02C03C04C0574.2°169.2°
O02C03C04H3946.4°71.1°
O02C03C04H40165.3°49.3°
C03C04C05C1040.2°55.0°
C03C04C05H39120.6°119.7°
C03C04C05H40120.5°119.9°
C03C04C05C06140.2°124.7°
C03C04H39H40118.3°120.5°
C04C03O02H4259.8°60.0°
C10C05C04C06179.6°179.8°
C10C05C06C070.1°173.8°
C10C05C06H34180.0°6.2°
C05C10H35H36117.9°120.4°
C05C10C01H3775.6°169.2°
C10C05C04H39160.8°174.7°
C10C05C04H4080.3°64.9°
C04C05C06C07179.5°6.0°
C04C05C06H340.5°174.1°
C04C05C10H3581.8°64.7°
C04C05C10H36159.5°174.9°
C05C04H39H40118.3°120.4°
C05C04C03H41164.9°70.5°
C05C06C07H34180.0°180.0°
C05C06C07C08173.7°174.7°
C05C06C07H336.3°5.4°
C06C05C10H3597.7°115.5°
C06C05C10H3621.0°4.9°
C06C05C04H3919.7°5.0°
C06C05C04H4099.3°115.4°
C06C07C08H33180.0°179.9°
C06C07C08C14178.8°173.8°
C06C07C08C090.2°7.1°
C07C08C14C09179.1°179.1°
C07C08C14C150.3°12.4°
C07C08C14C13115.5°120.2°
C07C08C09C11126.1°128.4°
C07C08C14H3126.7°118.8°
C07C08C09H31113.4°7.7°
C07C08C09H325.6°111.4°
C08C07C06H346.3°5.3°
C08C14C15C13118.2°111.2°
C08C14C15H3126.1°131.2°
C08C14C15C16164.8°147.1°
C08C14C13H3117.6°120.7°
C08C14C13C1859.8°47.4°
C14C08C09C1153.0°50.7°
C08C14C13C17173.5°160.2°
C08C14C13C1265.5°67.4°
C08C14C15H446.9°28.9°
C08C14C15H577.4°94.6°
C14C08C09H3167.5°171.4°
C14C08C09H32173.5°69.5°
C14C08C07H331.2°6.1°
C09C08C14C15179.5°166.7°
C09C08C14C1363.6°58.9°
C08C09C11H31120.5°120.9°
C08C09C11H32120.5°119.8°
C08C09C11C1245.2°47.4°
C09C08C14H354.1°62.1°
C08C09C11H29165.6°73.4°
C08C09C11H3075.4°168.0°
C08C09H31H32118.5°118.8°
C09C08C07H33179.8°172.9°
C14C15C16H4117.8°118.2°
C14C15C16H5117.8°118.3°
C15C14C13H3116.0°117.2°
C15C14C13C1866.7°74.7°
C14C15C16C1728.8°23.3°
C15C14C13C1747.0°38.1°
C15C14C13C12168.0°170.5°
C14C15H4H5126.0°123.5°
C14C15C16H6151.2°156.8°
C16C15C14C1346.6°35.9°
C15C16C17H6180.0°179.9°
C15C16C17C130.5°1.9°
C15C16C17C20178.4°178.1°
C16C15C14H369.1°81.6°
C16C15H4H5126.1°123.5°
C28C26C24H18121.6°120.0°
C28C26C24H19121.6°120.0°
C28C26C24C2383.8°175.0°
C28C26C24O03159.4°65.0°
C28C26C24C2738.4°55.0°
C28C26H18H19114.7°120.0°
C26C28H20H21120.0°120.0°
C26C28H20H22120.0°120.0°
C26C28H21H22120.0°119.9°
C14C13C18C17107.6°110.8°
C14C13C18C12124.0°115.7°
C14C13C17C1629.1°26.2°
C14C13C17C12113.1°123.6°
C14C13C12C1159.6°67.8°
C14C13C17C20149.9°153.8°
C14C13C12H1179.9°172.7°
C14C13C12H260.9°51.7°
C13C14C15H471.2°82.3°
C13C14C15H5164.4°154.2°
C14C13C18H26180.0°179.5°
C14C13C18H2760.0°59.5°
C14C13C18H2860.0°60.5°
C18C13C17C1693.7°85.7°
C18C13C17C12124.1°124.5°
C18C13C12C1170.8°46.1°
C18C13C17C2087.3°94.3°
C18C13C12H149.7°73.4°
C18C13C12H2168.7°165.6°
C18C13C14H3177.4°168.1°
C13C18H26H27120.0°120.0°
C13C18H26H28120.0°120.0°
C13C18H27H28120.0°120.0°
C09C11C12C1349.2°57.1°
C09C11C12H29120.5°120.7°
C09C11C12H30120.5°120.6°
C09C11C12H1169.7°176.6°
C09C11C12H271.3°62.4°
C09C11H29H30118.4°118.6°
C11C09H31H32118.5°119.3°
C16C17C13C20179.0°180.0°
C16C17C13C12142.1°149.7°
C16C17C20S22119.0°10.0°
C16C17C20C215.0°109.9°
C17C16C15H489.0°94.9°
C17C16C15H5146.6°141.6°
C16C17C20H24124.1°130.0°
C26C24C23O03116.5°120.0°
C26C24C23C27125.7°120.0°
C26C24C23S22177.8°174.6°
C26C24O03C27125.0°120.0°
C26C24C27C2977.4°56.6°
C26C24C23H1161.2°65.4°
C26C24C23H1256.8°54.7°
C26C24C27H1644.2°63.4°
C26C24C27H17161.1°176.6°
C24C26H18H19114.8°120.0°
C24C26C28H20180.0°60.0°
C24C26C28H2160.0°60.0°
C24C26C28H2260.0°180.0°
C26C24O03H23180.0°60.0°
C17C13C12C11166.4°170.6°
C13C17C20S2262.2°170.0°
C13C17C20C21173.8°70.1°
C17C13C12H173.1°51.1°
C17C13C12H245.9°69.9°
C17C13C14H368.9°79.1°
C13C17C16H6179.5°178.0°
C13C17C20H2454.7°50.0°
C17C13C18H2672.4°69.7°
C17C13C18H27167.6°170.2°
C17C13C18H2847.6°50.3°
C13C12C11H1120.5°119.5°
C13C12C11H2120.5°119.5°
C12C13C17C2036.8°30.3°
C13C12H1H2118.5°121.0°
C12C13C14H352.1°53.3°
C12C13C18H2656.0°63.9°
C12C13C18H2764.0°56.2°
C12C13C18H28176.0°176.1°
C13C12C11H29169.7°63.6°
C13C12C11H3071.3°177.6°
C11C12H1H2118.5°121.0°
C12C11H29H30118.4°118.8°
C12C11C09H3175.4°168.3°
C12C11C09H32165.6°72.4°
C17C20S22C2361.3°175.0°
C17C20S22C21123.2°120.0°
C17C20S22H24118.5°120.0°
C17C20C21H24118.7°120.0°
C20C17C16H61.6°2.0°
C17C20C21H8180.0°60.0°
C17C20C21H960.0°60.0°
C17C20C21H1060.0°180.0°
C24C23S22H11121.0°120.0°
C24C23S22H12121.0°120.0°
C23C24O03C27118.3°120.1°
C23C24C27C2944.2°63.4°
C24C23S22C20122.1°180.0°
C24C23H11H12116.8°120.0°
C23C24C27H16165.8°176.6°
C23C24C27H1777.4°56.6°
C23C24C26H18154.6°55.0°
C23C24C26H1937.8°65.0°
C23C24O03H2363.4°59.9°
S22C23C24O0365.7°65.4°
S22C23C24C2752.2°54.6°
C23S22C20C2161.9°65.0°
S22C23H11H12116.8°120.0°
C23S22C20H24179.8°55.0°
O03C24C27C29162.0°176.6°
O03C24C23H1155.3°54.6°
O03C24C23H12173.3°174.6°
O03C24C27H1676.5°56.5°
O03C24C27H1740.4°63.4°
O03C24C26H1837.8°175.0°
O03C24C26H1979.0°55.0°
C24C27C29H16121.6°120.0°
C24C27C29H17121.5°120.0°
C27C24C23H11173.2°174.6°
C27C24C23H1268.9°65.3°
C24C27C29H13180.0°175.9°
C24C27C29H1460.0°64.1°
C24C27C29H1560.0°56.0°
C24C27H16H17115.0°120.0°
C27C24C26H1883.2°65.0°
C27C24C26H19160.0°175.0°
C27C24O03H2354.9°180.0°
C27C29H13H14120.0°120.0°
C27C29H13H15120.0°120.0°
C27C29H14H15120.0°120.0°
C29C27H16H17115.0°120.0°
S22C20C21H24116.2°120.0°
S22C20C21H854.9°60.0°
S22C20C21H965.1°180.0°
S22C20C21H10174.9°60.1°
C20S22C23H111.1°60.0°
C20S22C23H12116.8°60.0°
C20C21H8H9120.0°120.0°
C20C21H8H10120.0°120.0°
C20C21H9H10120.0°119.9°
H1C12C11H2969.8°55.9°
H1C12C11H3049.2°62.9°
H2C12C11H2949.2°176.9°
H2C12C11H30168.2°58.1°
H3C14C15H4173.1°160.1°
H3C14C15H548.7°36.7°
H4C15C16H691.0°85.0°
H5C15C16H633.4°38.4°
H8C21H9H10120.0°120.1°
H8C21C20H2461.3°180.0°
H9C21C20H24178.7°60.0°
H10C21C20H2458.7°59.9°
H13C29H14H15119.9°120.0°
H13C29C27H1658.4°55.9°
H13C29C27H1758.5°64.1°
H14C29C27H16178.4°175.9°
H14C29C27H1761.5°55.9°
H15C29C27H1661.6°64.0°
H15C29C27H17178.5°176.0°
H18C26C28H2058.4°179.9°
H18C26C28H2161.6°59.9°
H18C26C28H22178.4°60.0°
H19C26C28H2058.4°60.0°
H19C26C28H21178.4°180.0°
H19C26C28H2261.6°60.0°
H20C28H21H22120.0°120.1°
H26C18H27H28120.0°120.0°
H29C11C09H3145.1°47.6°
H29C11C09H3273.9°166.9°
H30C11C09H31164.1°71.1°
H30C11C09H3245.1°48.2°
H33C07C06H34173.7°174.6°
H35C10C01H37163.8°49.4°
H36C10C01H3745.1°71.0°
H37C01O01H3860.0°60.4°
H39C04C03H4174.6°49.2°
H40C04C03H4144.3°169.7°
H41C03O02H4260.0°60.4°
H43C30C31H44111.0°73.6°
H43C30C31H45129.4°166.4°
H44C31O04H4659.8°60.0°
H45C31O04H4659.7°60.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon