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5Y7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O2sing1.43Å1.43Å
C3C4sing1.53Å1.53Å
C3O2sing1.43Å1.42Å
C4N5sing1.47Å1.48Å
C6C7sing1.55Å1.55Å
C6N5sing1.48Å1.48Å
C7C8sing1.55Å1.55Å
C8C9sing1.54Å1.55Å
C11C10sing1.53Å1.53Å
C11N12sing1.47Å1.47Å
C15C16doub1.39Å1.42ÅAromatic
C15C21sing1.40Å1.44ÅAromatic
C15N12sing1.39Å1.42Å
C16C18sing1.38Å1.39ÅAromatic
C16CLsing1.74Å1.75Å
C18N19doub1.32Å1.33ÅAromatic
C21C20doub1.39Å1.40ÅAromatic
C21C22sing1.48Å1.49Å
C23C24sing1.39Å1.40ÅAromatic
C23C22doub1.39Å1.41ÅAromatic
C24C31doub1.38Å1.38ÅAromatic
C24C25sing1.52Å1.53Å
O28S26doub1.42Å1.42Å
C30N29sing1.46Å1.47Å
C31C32sing1.41Å1.41ÅAromatic
C31N29sing1.40Å1.40Å
C32C33doub1.37Å1.37ÅAromatic
C33C22sing1.39Å1.40ÅAromatic
N5C9sing1.47Å1.49Å
C9C10sing1.53Å1.53Å
C9C14sing1.53Å1.52Å
N12C13sing1.47Å1.48Å
C13C14sing1.53Å1.53Å
N19C20sing1.32Å1.33ÅAromatic
C25S26sing1.83Å1.82Å
S26O27doub1.42Å1.42Å
S26N29sing1.66Å1.65Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C3H4sing1.09Å1.10Å
C3H5sing1.09Å1.10Å
C4H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C6H8sing1.09Å1.10Å
C6H9sing1.09Å1.10Å
C7H10sing1.09Å1.10Å
C7H11sing1.09Å1.10Å
C8H12sing1.09Å1.10Å
C8H13sing1.09Å1.10Å
C11H14sing1.09Å1.10Å
C11H15sing1.09Å1.10Å
C18H16sing1.08Å1.08Å
C23H17sing1.08Å1.08Å
C30H19sing1.09Å1.10Å
C30H20sing1.09Å1.10Å
C30H21sing1.09Å1.10Å
C32H22sing1.08Å1.08Å
C33H23sing1.08Å1.08Å
C10H25sing1.09Å1.10Å
C10H26sing1.09Å1.10Å
C13H27sing1.09Å1.10Å
C13H28sing1.09Å1.10Å
C14H29sing1.09Å1.10Å
C14H30sing1.09Å1.10Å
C20H31sing1.08Å1.08Å
C25H33sing1.09Å1.10Å
C25H34sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1O2C3110.6°114.0°
O2C1H1109.5°109.5°
O2C1H2109.5°109.5°
O2C1H3109.5°109.5°
C4C3O2114.6°109.5°
C3C4N5117.5°109.5°
C4C3H4108.2°109.5°
C4C3H5108.2°109.5°
C3C4H6107.4°109.5°
C3C4H7107.5°109.5°
O2C3H4108.2°109.5°
O2C3H5108.2°109.5°
C4N5C6115.1°111.0°
C4N5C9117.4°111.0°
N5C4H6107.5°109.5°
N5C4H7107.4°109.5°
C7C6N5103.3°104.8°
C6C7C899.6°101.7°
C7C6H8111.0°110.4°
C7C6H9111.0°110.4°
C6C7H10111.9°111.0°
C6C7H11111.9°111.0°
C6N5C9106.4°108.5°
N5C6H8111.0°110.3°
N5C6H9111.0°110.4°
C7C8C9105.0°103.0°
C8C7H10111.9°111.0°
C8C7H11111.9°111.0°
C7C8H12110.6°110.7°
C7C8H13110.6°110.7°
C8C9N5105.8°107.5°
C8C9C10111.7°109.6°
C8C9C14111.3°109.6°
C9C8H12110.6°110.7°
C9C8H13110.6°110.7°
C10C11N12114.3°109.5°
C11C10C9113.4°109.3°
C10C11H14108.3°109.5°
C10C11H15108.3°109.5°
C11C10H25108.5°109.5°
C11C10H26108.5°109.5°
C11N12C15121.1°111.0°
C11N12C13120.6°111.3°
N12C11H14108.2°109.5°
N12C11H15108.3°109.5°
C16C15C21117.0°118.2°
C16C15N12122.6°120.9°
C15C16C18118.9°119.2°
C15C16CL123.7°120.4°
C21C15N12120.3°120.9°
C15C21C20119.4°118.8°
C15C21C22120.4°120.6°
C15N12C13118.2°111.0°
C18C16CL117.4°120.4°
C16C18N19121.9°121.1°
C16C18H16119.1°119.4°
C18N19C20122.1°122.0°
N19C18H16119.1°119.4°
C20C21C22120.1°120.6°
C21C20N19120.8°120.7°
C21C20H31119.6°119.6°
C21C22C23124.7°120.4°
C21C22C33116.4°120.5°
C24C23C22120.5°120.7°
C23C24C31120.2°120.7°
C23C24C25130.5°126.7°
C24C23H17119.8°119.7°
C23C22C33118.8°119.1°
C22C23H17119.7°119.7°
C31C24C25109.3°112.6°
C24C31C32118.9°118.2°
C24C31N29116.5°118.2°
C24C25S2697.0°102.4°
C24C25H33112.5°110.8°
C24C25H34112.5°110.8°
O28S26C25114.3°111.4°
O28S26O27122.4°121.9°
O28S26N29108.7°105.4°
C30N29C31129.2°125.6°
C30N29S26127.9°125.5°
N29C30H19109.5°109.5°
N29C30H20109.5°109.5°
N29C30H21109.5°109.5°
C32C31N29124.5°123.7°
C31C32C33121.3°121.4°
C31C32H22119.4°119.3°
C31N29S26102.8°109.0°
C32C33C22120.2°120.0°
C33C32H22119.3°119.3°
C32C33H23119.9°120.0°
C22C33H23119.9°120.0°
N5C9C10113.1°110.1°
N5C9C14109.5°110.1°
C10C9C14105.5°109.9°
C9C10H25108.5°109.5°
C9C10H26108.5°109.5°
C9C14C13113.7°109.3°
C9C14H29108.4°109.5°
C9C14H30108.4°109.5°
N12C13C14115.8°109.5°
N12C13H27107.9°109.5°
N12C13H28107.8°109.4°
C14C13H27107.8°109.5°
C14C13H28107.9°109.5°
C13C14H29108.4°109.5°
C13C14H30108.4°109.5°
N19C20H31119.6°119.7°
C25S26O27110.4°111.5°
C25S26N2993.0°97.8°
S26C25H33112.5°110.8°
S26C25H34112.5°110.8°
O27S26N29103.1°105.6°
H1C1H2109.5°109.5°
H1C1H3109.5°109.4°
H2C1H3109.5°109.5°
H4C3H5109.5°109.4°
H6C4H7109.5°109.4°
H8C6H9109.5°110.5°
H10C7H11109.5°110.9°
H12C8H13109.5°110.8°
H14C11H15109.5°109.5°
H19C30H20109.5°109.5°
H19C30H21109.4°109.4°
H20C30H21109.5°109.4°
H25C10H26109.5°109.5°
H27C13H28109.5°109.4°
H29C14H30109.5°109.5°
H33C25H34109.4°110.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1O2C3C4169.4°180.0°
O2C1H1H2120.0°120.0°
O2C1H1H3120.0°120.0°
O2C1H2H3120.0°120.0°
C1O2C3H448.6°60.0°
C1O2C3H569.9°59.9°
C4C3O2H4120.7°120.0°
C4C3O2H5120.7°120.0°
C3C4N5H6121.1°120.0°
C3C4N5H7121.2°120.0°
C3C4N5C654.2°64.9°
C3C4N5C9179.4°174.4°
C4C3H4H5117.7°120.0°
C3C4H6H7116.4°120.0°
O2C3C4N573.6°65.0°
C3O2C1H1180.0°60.0°
C3O2C1H260.0°60.0°
C3O2C1H360.0°180.0°
O2C3H4H5117.7°120.0°
O2C3C4H6165.2°175.0°
O2C3C4H747.5°55.0°
C4N5C6C7171.2°146.2°
C4N5C6C9131.9°122.2°
C4N5C9C8148.1°123.2°
C4N5C9C1025.6°3.9°
C4N5C9C1491.8°117.5°
N5C4C3H4165.6°175.0°
N5C4C3H547.1°55.0°
N5C4H6H7116.4°120.0°
C4N5C6H852.2°27.5°
C4N5C6H969.8°94.9°
C7C6N5H8119.0°118.8°
C7C6N5H9119.0°118.8°
C6C7C8H10118.4°118.1°
C6C7C8H11118.4°118.1°
C6C7C8C933.0°35.5°
C7C6N5C939.3°24.0°
C7C6H8H9122.8°122.3°
C6C7H10H11124.6°123.8°
C6C7C8H12152.2°153.8°
C6C7C8H1386.3°82.9°
N5C6C7C844.2°36.9°
C6N5C9C817.6°1.0°
C6N5C9C10105.0°118.3°
C6N5C9C14137.6°120.4°
C6N5C4H666.9°55.2°
C6N5C4H7175.4°175.1°
N5C6H8H9122.9°122.3°
N5C6C7H1074.2°81.2°
N5C6C7H11162.6°155.0°
C7C8C9H12119.3°118.3°
C7C8C9H13119.3°118.4°
C7C8C9N510.8°22.2°
C7C8C9C10134.3°141.8°
C7C8C9C14108.1°97.5°
C8C7C6H874.8°81.8°
C8C7C6H9163.2°155.8°
C8C7H10H11124.6°123.9°
C7C8H12H13122.1°123.2°
C8C9C10C1159.3°63.6°
C8C9N5C10122.6°119.3°
C8C9N5C14120.0°119.3°
C8C9C10C14121.1°120.5°
C8C9C14C1363.4°63.6°
C9C8C7H1085.4°82.6°
C9C8C7H11151.3°153.5°
C9C8H12H13122.1°123.2°
C8C9C10H25179.8°176.4°
C8C9C10H2661.3°56.3°
C8C9C14H29176.0°176.4°
C8C9C14H3057.3°56.3°
C10C11N12H14120.7°120.0°
C10C11N12H15120.7°120.1°
C10C11N12C15159.4°173.9°
C11C10C9N5178.5°178.4°
C11C10C9H25120.6°120.0°
C11C10C9H26120.6°119.9°
C11C10C9C1461.8°56.9°
C10C11N12C1325.6°62.0°
C10C11H14H15117.8°120.1°
C11C10H25H26118.2°120.1°
C11N12C15C16119.7°60.0°
C11N12C15C2163.2°119.7°
C11N12C15C13175.1°124.3°
N12C11C10C946.5°58.7°
C11N12C13C1422.6°62.0°
N12C11H14H15117.8°120.0°
N12C11C10H2574.0°61.3°
N12C11C10H26167.1°178.6°
C11N12C13H2798.3°58.0°
C11N12C13H28143.6°178.0°
C16C15C21N12177.3°179.7°
C15C16C18CL179.2°179.9°
C15C16C18N190.7°0.1°
C16C15C21C202.2°0.1°
C16C15C21C22179.6°180.0°
C16C15N12C1365.2°64.3°
C15C16C18H16179.3°180.0°
C21C15C16C181.6°0.1°
C21C15C16CL179.3°180.0°
C15C21C20C22177.4°180.0°
C15C21C22C2379.1°130.0°
C15C21C22C3398.0°50.1°
C21C15N12C13111.9°116.0°
C15C21C20N192.0°0.0°
C15C21C20H31178.0°180.0°
N12C15C16C18178.8°179.8°
N12C15C16CL2.0°0.3°
N12C15C21C20179.5°179.8°
N12C15C21C223.1°0.3°
C15N12C13C14162.3°173.8°
C15N12C11H1479.9°66.2°
C15N12C11H1538.7°53.8°
C15N12C13H2776.8°66.1°
C15N12C13H2841.4°53.8°
C16C18N19H16180.0°179.9°
C16C18N19C200.4°0.0°
CLC16C18N19179.9°179.9°
CLC16C18H160.1°0.1°
C18N19C20C211.1°0.0°
C18N19C20H31178.9°180.0°
C20C21C22C23103.6°49.9°
C20C21C22C3379.3°129.9°
C21C20N19H31180.0°180.0°
C21C22C23C24178.4°179.9°
C21C22C23C33177.0°179.9°
C21C22C33C32178.2°179.9°
C22C21C20N19179.4°180.0°
C21C22C23H171.6°0.2°
C21C22C33H231.8°0.1°
C22C21C20H310.6°0.0°
C24C23C22H17180.0°179.7°
C23C24C31C25179.5°180.0°
C23C24C31C320.8°0.0°
C23C24C31N29178.1°180.0°
C24C23C22C331.4°0.0°
C23C24C25S26151.6°180.0°
C23C24C25H3390.5°61.8°
C23C24C25H3433.6°61.7°
C22C23C24C310.5°0.0°
C22C23C24C25178.8°180.0°
C23C22C33C320.9°0.0°
C23C22C33H23179.1°180.0°
C24C31N29C30153.9°180.0°
C24C31C32N29177.0°179.9°
C24C31C32C331.3°0.1°
C31C24C25S2629.0°0.0°
C24C31N29S2629.1°0.0°
C31C24C23H17179.5°179.7°
C24C31C32H22178.7°179.9°
C31C24C25H3388.9°118.2°
C31C24C25H34147.0°118.2°
C24C25S26O28152.8°110.0°
C25C24C31C32179.7°179.9°
C25C24C31N292.5°0.0°
C24C25S26H33117.9°118.2°
C24C25S26H34117.9°118.2°
C24C25S26O2764.6°110.2°
C24C25S26N2940.7°0.0°
C25C24C23H171.2°0.3°
C24C25H33H34125.8°123.5°
O28S26N29C3025.2°65.1°
O28S26N29C31157.8°114.9°
O28S26C25O27142.7°139.8°
O28S26C25N29112.1°110.0°
O28S26O27N29122.6°119.9°
O28S26C25H3334.9°8.2°
O28S26C25H3489.3°131.8°
C30N29C31C3229.0°0.1°
C30N29C31S26177.0°180.0°
C30N29S26C25142.1°180.0°
C30N29S26O27106.1°65.1°
N29C30H19H20120.0°120.1°
N29C30H19H21120.0°120.0°
N29C30H20H21120.0°120.0°
C31C32C33H22180.0°179.9°
C31C32C33C220.4°0.0°
C32C31N29S26148.0°179.9°
C31C32C33H23179.6°179.9°
N29C31C32C33178.3°180.0°
C31N29S26C2540.8°0.0°
C31N29S26O2771.0°114.9°
C31N29C30H19176.3°0.0°
C31N29C30H2056.3°120.0°
C31N29C30H2163.7°120.0°
N29C31C32H221.7°0.1°
C32C33C22H23180.0°180.0°
C33C22C23H17178.6°179.7°
C22C33C32H22179.6°179.9°
N5C9C10C14119.7°121.4°
N5C9C14C13180.0°178.4°
C9N5C4H659.5°65.5°
C9N5C4H758.2°54.4°
C9N5C6H879.7°94.7°
C9N5C6H9158.4°142.9°
N5C9C8H12130.0°140.5°
N5C9C8H13108.5°96.3°
N5C9C10H2560.9°58.4°
N5C9C10H2657.9°61.7°
N5C9C14H2959.4°58.4°
N5C9C14H3059.3°61.7°
C10C9C14C1358.0°56.9°
C10C9C8H12106.5°99.9°
C10C9C8H1314.9°23.4°
C9C10C11H1474.1°61.3°
C9C10C11H15167.3°178.7°
C9C10H25H26118.2°120.1°
C10C9C14H2962.6°63.1°
C10C9C14H30178.6°176.9°
C9C14C13N1240.0°58.7°
C9C14C13H29120.6°119.9°
C9C14C13H30120.6°120.0°
C14C9C8H1211.2°20.9°
C14C9C8H13132.6°144.1°
C14C9C10H2558.8°63.1°
C14C9C10H26177.6°176.8°
C9C14C13H2780.9°61.3°
C9C14C13H28161.0°178.7°
C9C14H29H30118.1°120.1°
N12C13C14H27120.9°120.0°
N12C13C14H28120.9°120.0°
C13N12C11H1495.1°58.0°
C13N12C11H15146.4°177.9°
N12C13H27H28117.1°119.9°
N12C13C14H2980.6°61.3°
N12C13C14H30160.7°178.6°
C14C13H27H28117.1°120.0°
C13C14H29H30118.1°120.1°
C20N19C18H16179.6°179.9°
C25S26O27N2998.3°105.2°
S26C25H33H34125.8°123.5°
O27S26C25H33177.5°131.6°
O27S26C25H3453.4°8.0°
S26N29C30H190.0°180.0°
S26N29C30H20120.0°59.9°
S26N29C30H21120.0°60.0°
N29S26C25H3377.3°118.2°
N29S26C25H34158.6°118.2°
H1C1H2H3120.0°120.0°
H4C3C4H644.5°55.0°
H4C3C4H773.2°65.0°
H5C3C4H674.0°65.0°
H5C3C4H7168.3°175.0°
H8C6C7H10166.8°160.0°
H8C6C7H1143.6°36.2°
H9C6C7H1044.8°37.7°
H9C6C7H1178.4°86.1°
H10C7C8H1233.9°35.7°
H10C7C8H13155.3°159.0°
H11C7C8H1289.4°88.1°
H11C7C8H1332.0°35.1°
H14C11C10H25165.3°178.7°
H14C11C10H2646.5°58.6°
H15C11C10H2546.7°58.7°
H15C11C10H2672.1°61.4°
H19C30H20H21120.0°119.9°
H22C32C33H230.4°0.1°
H27C13C14H29158.5°178.7°
H27C13C14H3039.7°58.6°
H28C13C14H2940.3°58.7°
H28C13C14H3078.4°61.4°

247536

PDB entries from 2026-01-14

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