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Summary Geometry Related PDB entries

5XC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O03	C11	doub	1.21Å	1.44Å
O01	C04	sing	1.36Å	1.42Å
O01	C07	sing	1.44Å	1.34Å
C06	C04	doub	1.38Å	1.40Å	Aromatic
C06	C09	sing	1.40Å	1.40Å	Aromatic
C04	C05	sing	1.40Å	1.39Å	Aromatic
C11	C09	sing	1.47Å	1.52Å
C07	O02	sing	1.44Å	1.33Å
C09	C10	doub	1.40Å	1.40Å	Aromatic
C05	O02	sing	1.36Å	1.42Å
C05	C08	doub	1.39Å	1.41Å	Aromatic
C10	C08	sing	1.38Å	1.39Å	Aromatic
C06	H2	sing	1.08Å	1.08Å
C07	H3	sing	1.09Å	1.10Å
C08	H4	sing	1.08Å	1.08Å
C10	H5	sing	1.08Å	1.08Å
C11	H6	sing	1.08Å	1.08Å
C07	H1	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O03	C11	C09	108.1°	120.0°
O03	C11	H6	126.0°	120.0°
C04	O01	C07	108.2°	105.5°
O01	C04	C06	133.0°	131.5°
O01	C04	C05	107.1°	108.6°
O01	C07	O02	110.0°	103.8°
O01	C07	H3	109.3°	110.6°
O01	C07	H1	109.3°	110.6°
C04	C06	C09	120.0°	119.9°
C06	C04	C05	120.0°	120.0°
C04	C06	H2	120.0°	120.0°
C06	C09	C11	119.8°	120.1°
C06	C09	C10	120.1°	119.8°
C09	C06	H2	120.0°	120.1°
C04	C05	O02	105.5°	108.6°
C04	C05	C08	119.9°	120.1°
C11	C09	C10	120.1°	120.1°
C09	C11	H6	126.0°	120.0°
C07	O02	C05	109.2°	105.5°
O02	C07	H3	109.4°	110.5°
O02	C07	H1	109.4°	110.5°
C09	C10	C08	119.9°	120.0°
C09	C10	H5	120.1°	120.0°
O02	C05	C08	134.6°	131.3°
C05	C08	C10	120.1°	120.2°
C05	C08	H4	119.9°	119.8°
C10	C08	H4	120.0°	120.0°
C08	C10	H5	120.1°	120.0°
H3	C07	H1	109.5°	110.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O03	C11	C09	C06	0.5°	180.0°
O03	C11	C09	H6	180.0°	180.0°
O03	C11	C09	C10	179.7°	0.0°
O01	C04	C06	C05	180.0°	179.9°
O01	C04	C06	C09	179.9°	180.0°
C04	O01	C07	O02	0.1°	27.2°
O01	C04	C05	O02	0.1°	0.1°
O01	C04	C05	C08	180.0°	180.0°
O01	C04	C06	H2	0.0°	0.0°
C04	O01	C07	H3	120.2°	145.8°
C04	O01	C07	H1	120.0°	91.3°
C07	O01	C04	C06	179.9°	162.6°
C07	O01	C04	C05	0.1°	17.3°
O01	C07	O02	H3	120.1°	118.6°
O01	C07	O02	H1	120.1°	118.6°
O01	C07	O02	C05	0.1°	27.3°
O01	C07	H3	H1	119.7°	122.9°
C04	C06	C09	H2	180.0°	180.0°
C04	C06	C09	C11	179.9°	180.0°
C04	C06	C09	C10	0.1°	0.1°
C06	C04	C05	O02	179.9°	180.0°
C06	C04	C05	C08	0.0°	0.1°
C09	C06	C04	C05	0.1°	0.0°
C06	C09	C11	C10	179.8°	179.9°
C06	C09	C10	C08	0.1°	0.1°
C06	C09	C10	H5	179.9°	180.0°
C06	C09	C11	H6	179.5°	0.0°
C04	C05	O02	C07	0.0°	17.4°
C04	C05	O02	C08	180.0°	179.9°
C04	C05	C08	C10	0.0°	0.0°
C05	C04	C06	H2	180.0°	180.0°
C04	C05	C08	H4	180.0°	180.0°
C11	C09	C10	C08	179.9°	179.9°
C11	C09	C06	H2	0.2°	0.0°
C11	C09	C10	H5	0.1°	0.1°
C07	O02	C05	C08	179.9°	162.7°
O02	C07	H3	H1	119.8°	122.8°
C09	C10	C08	C05	0.1°	0.1°
C09	C10	C08	H5	180.0°	179.9°
C10	C09	C06	H2	179.9°	180.0°
C09	C10	C08	H4	179.9°	179.9°
C10	C09	C11	H6	0.3°	179.9°
O02	C05	C08	C10	179.9°	179.9°
C05	O02	C07	H3	120.2°	145.9°
O02	C05	C08	H4	0.1°	0.1°
C05	O02	C07	H1	120.0°	91.3°
C05	C08	C10	H4	180.0°	180.0°
C05	C08	C10	H5	179.9°	180.0°
H4	C08	C10	H5	0.1°	0.1°

222415

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