Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

5X1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAQCAOsing1.53Å1.52Å
CAQNBHsing1.47Å1.44Å
CARNBHsing1.47Å1.45Å
CARCAZsing1.51Å1.54Å
CAONBGsing1.47Å1.47Å
NBHCAPsing1.47Å1.41Å
CAZCAJdoub1.38Å1.42ÅAromatic
CAZCALsing1.38Å1.40ÅAromatic
F03CAAsing1.40Å1.33Å
CAJCAYsing1.38Å1.43ÅAromatic
NBGCACsing1.47Å1.43Å
NBGCANsing1.47Å1.42Å
CALCBBdoub1.40Å1.44ÅAromatic
CAPCANsing1.53Å1.52Å
CAYCAAsing1.51Å1.53Å
CAYCAKdoub1.38Å1.41ÅAromatic
F01CAAsing1.40Å1.34Å
CAAF02sing1.40Å1.35Å
CAKCBBsing1.40Å1.42ÅAromatic
CBBCAXsing1.48Å1.55Å
NAWCAXsing1.35Å1.49Å
NAWCBAsing1.40Å1.43Å
CAXOADdoub1.22Å1.25Å
CAECBAdoub1.39Å1.41ÅAromatic
CAECAFsing1.38Å1.42ÅAromatic
CBACAMsing1.39Å1.42ÅAromatic
CAFCBEdoub1.39Å1.53ÅAromatic
CAMCBCdoub1.39Å1.53ÅAromatic
CABCBFsing1.53Å1.48Å
CBECBCsing1.38Å1.34ÅAromatic
CBECBFsing1.51Å1.51Å
CBCCASsing1.51Å1.58Å
CBFCATsing1.53Å1.50Å
CASNBIsing1.47Å1.46Å
CATNBIsing1.47Å1.43Å
NBICBDsing1.40Å1.47Å
CBDCAIdoub1.39Å1.40ÅAromatic
CBDCAHsing1.39Å1.42ÅAromatic
CAINAVsing1.32Å1.32ÅAromatic
NAVCAGdoub1.32Å1.37ÅAromatic
CAHNAUdoub1.32Å1.38ÅAromatic
CAGNAUsing1.32Å1.35ÅAromatic
CABH1sing1.09Å1.10Å
CABH2sing1.09Å1.10Å
CABH3sing1.09Å1.10Å
CACH4sing1.09Å1.10Å
CACH5sing1.09Å1.10Å
CACH6sing1.09Å1.10Å
CAEH7sing1.08Å1.08Å
CAFH8sing1.08Å1.08Å
CAGH9sing1.08Å1.08Å
CAHH10sing1.08Å1.08Å
CAIH11sing1.08Å1.08Å
CAJH12sing1.08Å1.08Å
CAKH13sing1.08Å1.08Å
CALH14sing1.08Å1.08Å
CAMH15sing1.08Å1.08Å
CANH16sing1.09Å1.10Å
CANH17sing1.09Å1.10Å
CAOH18sing1.09Å1.10Å
CAOH19sing1.09Å1.10Å
CAPH20sing1.09Å1.10Å
CAPH21sing1.09Å1.10Å
CAQH22sing1.09Å1.10Å
CAQH23sing1.09Å1.10Å
CARH24sing1.09Å1.10Å
CARH25sing1.09Å1.10Å
CASH26sing1.09Å1.10Å
CASH27sing1.09Å1.10Å
CATH28sing1.09Å1.10Å
CATH29sing1.09Å1.10Å
NAWH30sing0.97Å1.00Å
CBFH31sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAOCAQNBH110.9°109.3°
CAQCAONBG110.8°109.4°
CAQCAOH18109.1°109.5°
CAQCAOH19109.2°109.5°
CAOCAQH22109.1°109.5°
CAOCAQH23109.1°109.5°
CAQNBHCAR111.7°111.0°
CAQNBHCAP111.1°110.9°
NBHCAQH22109.1°109.5°
NBHCAQH23109.1°109.5°
NBHCARCAZ112.1°109.5°
CARNBHCAP114.1°111.0°
NBHCARH24108.8°109.5°
NBHCARH25108.8°109.4°
CARCAZCAJ119.6°119.9°
CARCAZCAL120.4°119.9°
CAZCARH24108.8°109.5°
CAZCARH25108.8°109.5°
CAONBGCAC110.3°111.0°
CAONBGCAN112.2°110.9°
NBGCAOH18109.1°109.5°
NBGCAOH19109.1°109.5°
NBHCAPCAN111.7°109.4°
NBHCAPH20108.9°109.5°
NBHCAPH21108.9°109.5°
CAJCAZCAL116.9°120.2°
CAZCAJCAY119.2°120.3°
CAZCAJH12120.4°119.9°
CAZCALCBB120.1°119.9°
CAZCALH14120.0°120.1°
F03CAACAY111.8°109.5°
F03CAAF01108.5°109.4°
F03CAAF02107.1°109.5°
CAJCAYCAA121.5°119.9°
CAJCAYCAK117.6°120.2°
CAYCAJH12120.4°119.9°
CACNBGCAN111.1°111.0°
NBGCACH4109.5°109.5°
NBGCACH5109.5°109.5°
NBGCACH6109.5°109.4°
NBGCANCAP108.7°109.4°
NBGCANH16109.7°109.5°
NBGCANH17109.7°109.5°
CALCBBCAK115.5°119.7°
CALCBBCAX119.2°120.2°
CBBCALH14119.9°120.1°
CAPCANH16109.7°109.5°
CAPCANH17109.7°109.5°
CANCAPH20108.9°109.5°
CANCAPH21108.9°109.5°
CAACAYCAK120.9°119.9°
CAYCAAF01108.4°109.5°
CAYCAAF02110.6°109.5°
CAYCAKCBB118.8°119.8°
CAYCAKH13120.6°120.0°
F01CAAF02110.4°109.5°
CAKCBBCAX120.3°120.1°
CBBCAKH13120.6°120.1°
CBBCAXNAW121.0°120.0°
CBBCAXOAD118.1°120.0°
CAXNAWCBA122.9°120.0°
NAWCAXOAD120.9°120.0°
CAXNAWH30118.5°120.0°
NAWCBACAE119.7°120.2°
NAWCBACAM122.1°120.2°
CBANAWH30118.6°120.0°
CBACAECAF121.6°119.8°
CAECBACAM118.2°119.7°
CBACAEH7119.2°120.1°
CAECAFCBE120.3°120.4°
CAFCAEH7119.2°120.1°
CAECAFH8119.9°119.8°
CBACAMCBC121.7°120.4°
CBACAMH15119.2°119.8°
CAFCBECBC118.5°120.0°
CAFCBECBF117.5°118.4°
CBECAFH8119.9°119.8°
CAMCBCCBE119.8°119.8°
CAMCBCCAS115.6°118.4°
CBCCAMH15119.2°119.8°
CABCBFCBE113.1°109.4°
CABCBFCAT113.3°109.4°
CBFCABH1109.5°109.5°
CBFCABH2109.4°109.5°
CBFCABH3109.5°109.5°
CABCBFH31107.6°109.4°
CBCCBECBF124.0°121.7°
CBECBCCAS124.6°121.8°
CBECBFCAT108.0°109.9°
CBECBFH31107.2°109.4°
CBCCASNBI107.8°110.5°
CBCCASH26109.9°109.3°
CBCCASH27109.9°109.2°
CBFCATNBI117.2°108.5°
CBFCATH28107.5°109.7°
CBFCATH29107.5°109.6°
CATCBFH31107.3°109.3°
CASNBICAT118.5°110.2°
CASNBICBD114.2°111.0°
NBICASH26109.9°109.3°
NBICASH27109.9°109.3°
CATNBICBD119.4°111.0°
NBICATH28107.5°109.6°
NBICATH29107.5°109.6°
NBICBDCAI122.3°120.9°
NBICBDCAH122.8°120.8°
CAICBDCAH114.8°118.3°
CBDCAINAV124.2°119.0°
CBDCAIH11117.9°120.5°
CBDCAHNAU120.3°119.0°
CBDCAHH10119.8°120.5°
CAINAVCAG119.8°120.9°
NAVCAIH11117.9°120.5°
NAVCAGNAU119.9°121.9°
NAVCAGH9120.1°119.1°
CAHNAUCAG121.1°120.9°
NAUCAHH10119.9°120.5°
NAUCAGH9120.1°119.0°
H1CABH2109.5°109.5°
H1CABH3109.4°109.5°
H2CABH3109.5°109.5°
H4CACH5109.4°109.5°
H4CACH6109.5°109.4°
H5CACH6109.5°109.4°
H16CANH17109.5°109.5°
H18CAOH19109.5°109.5°
H20CAPH21109.5°109.5°
H22CAQH23109.4°109.5°
H24CARH25109.5°109.4°
H26CASH27109.5°109.3°
H28CATH29109.4°109.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAOCAQNBHH22120.2°119.9°
CAOCAQNBHH23120.2°119.9°
CAOCAQNBHCAR175.5°176.8°
CAQCAONBGH18120.2°120.0°
CAQCAONBGH19120.2°120.0°
CAOCAQNBHCAP55.8°59.3°
CAQCAONBGCAC178.7°176.9°
CAQCAONBGCAN54.4°59.3°
CAQCAOH18H19119.4°120.1°
CAOCAQH22H23119.4°120.0°
CAQNBHCARCAP127.1°123.8°
CAQNBHCARCAZ173.9°170.0°
NBHCAQCAONBG52.4°58.4°
CAQNBHCAPCAN59.5°59.4°
NBHCAQCAOH18172.6°178.4°
NBHCAQCAOH1967.8°61.6°
CAQNBHCAPH20179.9°60.7°
CAQNBHCAPH2160.8°179.3°
NBHCAQH22H23119.4°120.1°
CAQNBHCARH2453.5°69.9°
CAQNBHCARH2565.7°50.0°
NBHCARCAZH24120.4°120.1°
NBHCARCAZH25120.4°120.0°
NBHCARCAZCAJ114.5°90.0°
NBHCARCAZCAL45.0°90.0°
CARNBHCAPCAN173.1°176.8°
CARNBHCAPH2052.8°63.2°
CARNBHCAPH2166.6°56.8°
CARNBHCAQH2255.2°56.9°
CARNBHCAQH2364.3°63.2°
NBHCARH24H25118.8°120.0°
CAZCARNBHCAP59.0°66.2°
CARCAZCAJCAL160.2°180.0°
CARCAZCAJCAY170.7°180.0°
CARCAZCALCBB170.0°179.5°
CARCAZCAJH129.3°0.3°
CARCAZCALH1410.0°0.2°
CAZCARH24H25118.8°120.0°
CAONBGCACCAN125.0°123.7°
CAONBGCANCAP56.2°59.3°
CAONBGCACH4180.0°59.9°
CAONBGCACH560.0°180.0°
CAONBGCACH660.0°60.1°
CAONBGCANH16176.1°60.7°
CAONBGCANH1763.6°179.3°
NBGCAOH18H19119.4°120.0°
NBGCAOCAQH22172.6°178.4°
NBGCAOCAQH2367.9°61.5°
NBHCAPCANNBG59.4°58.5°
NBHCAPCANH20120.4°120.0°
NBHCAPCANH21120.3°119.9°
NBHCAPCANH16179.2°61.5°
NBHCAPCANH1760.6°178.4°
NBHCAPH20H21119.0°120.0°
CAPNBHCAQH22176.1°179.3°
CAPNBHCAQH2364.4°60.6°
CAPNBHCARH24179.4°53.8°
CAPNBHCARH2561.4°173.8°
CAZCAJCAYH12180.0°179.7°
CAJCAZCALCBB9.9°0.5°
CAZCAJCAYCAA161.6°179.7°
CAZCAJCAYCAK16.3°0.3°
CAJCAZCALH14170.1°179.8°
CAJCAZCARH24125.2°150.0°
CAJCAZCARH255.9°30.0°
CALCAZCAJCAY29.1°0.0°
CAZCALCBBH14180.0°179.3°
CAZCALCBBCAK20.8°0.8°
CAZCALCBBCAX175.8°179.2°
CALCAZCAJH12150.9°179.7°
CALCAZCARH2475.3°30.0°
CALCAZCARH25165.4°150.0°
F03CAACAYCAJ20.5°150.0°
F03CAACAYF01119.6°119.9°
F03CAACAYF02119.2°120.0°
F03CAACAYCAK157.4°30.0°
F03CAAF01F02117.1°120.0°
CAJCAYCAACAK177.8°180.0°
CAJCAYCAAF01140.0°30.1°
CAJCAYCAAF0298.8°90.0°
CAJCAYCAKCBB15.8°0.0°
CAJCAYCAKH13164.2°179.5°
CACNBGCANCAP179.8°176.8°
NBGCACH4H5120.0°120.1°
NBGCACH4H6120.0°120.0°
NBGCACH5H6120.0°120.0°
CACNBGCANH1660.0°63.2°
CACNBGCANH1760.3°56.8°
CACNBGCAOH1861.1°56.9°
CACNBGCAOH1958.5°63.1°
NBGCANCAPH16119.9°120.0°
NBGCANCAPH17119.9°120.0°
CANNBGCACH455.0°63.8°
CANNBGCACH5175.0°56.3°
CANNBGCACH665.0°176.2°
NBGCANH16H17120.4°120.0°
CANNBGCAOH18174.5°179.3°
CANNBGCAOH1965.9°60.7°
NBGCANCAPH20179.7°61.6°
NBGCANCAPH2161.0°178.4°
CALCBBCAKCAY33.9°0.5°
CALCBBCAKCAX154.7°180.0°
CALCBBCAXNAW13.0°180.0°
CALCBBCAXOAD166.4°0.0°
CALCBBCAKH13146.0°180.0°
CAPCANH16H17120.3°120.1°
CANCAPH20H21119.0°120.1°
CAYCAAF01F02121.3°120.1°
CAACAYCAKCBB166.3°180.0°
CAACAYCAJH1218.5°0.1°
CAACAYCAKH1313.7°0.5°
CAKCAYCAAF0137.8°150.0°
CAKCAYCAAF0283.4°90.0°
CAYCAKCBBH13180.0°179.5°
CAYCAKCBBCAX171.4°179.5°
CAKCAYCAJH12163.6°179.9°
CAKCBBCAXNAW166.7°0.0°
CAKCBBCAXOAD12.6°180.0°
CAKCBBCALH14159.2°180.0°
CBBCAXNAWOAD179.3°180.0°
CBBCAXNAWCBA178.9°175.4°
CAXCBBCAKH138.6°0.1°
CAXCBBCALH144.2°0.0°
CBBCAXNAWH301.1°4.6°
CAXNAWCBAH30180.0°180.0°
CAXNAWCBACAE151.7°35.0°
CAXNAWCBACAM28.1°144.9°
CBANAWCAXOAD0.4°4.6°
NAWCBACAECAM179.9°179.9°
NAWCBACAECAF179.2°179.9°
NAWCBACAMCBC178.6°179.9°
NAWCBACAEH70.8°0.2°
NAWCBACAMH151.4°0.0°
OADCAXNAWH30179.6°175.4°
CBACAECAFH7180.0°179.7°
CBACAECAFCBE0.6°0.0°
CAECBACAMCBC1.3°0.2°
CBACAECAFH8179.4°180.0°
CAECBACAMH15178.7°179.9°
CAECBANAWH3028.2°145.0°
CAFCAECBACAM0.7°0.2°
CAECAFCBEH8180.0°180.0°
CAECAFCBECBC1.1°0.1°
CAECAFCBECBF178.2°179.5°
CBACAMCBCH15180.0°179.9°
CBACAMCBCCBE1.8°0.0°
CBACAMCBCCAS179.9°179.8°
CAMCBACAEH7179.3°179.9°
CAMCBANAWH30151.9°35.1°
CAFCBECBCCAM1.6°0.2°
CAFCBECBFCAB70.1°76.6°
CAFCBECBCCBF179.2°179.7°
CAFCBECBCCAS179.6°179.7°
CAFCBECBFCAT163.8°163.2°
CBECAFCAEH7179.4°179.7°
CAFCBECBFH3148.4°43.2°
CAMCBCCBECAS178.0°179.8°
CAMCBCCBECBF177.6°179.5°
CAMCBCCASNBI174.5°162.5°
CAMCBCCASH2654.7°42.1°
CAMCBCCASH2765.8°77.3°
CABCBFCBECBC110.7°103.0°
CABCBFCBECAT126.1°120.1°
CABCBFCBEH31118.5°119.9°
CABCBFCATH31118.6°119.8°
CABCBFCATNBI84.0°69.7°
CBFCABH1H2120.0°120.0°
CBFCABH1H3120.0°120.0°
CBFCABH2H3120.0°120.0°
CABCBFCATH28154.8°170.6°
CABCBFCATH2937.1°50.0°
CBCCBECBFCAT15.5°17.1°
CBECBCCASNBI7.5°17.7°
CBCCBECAFH8178.9°179.8°
CBECBCCAMH15178.2°179.9°
CBECBCCASH26127.2°138.1°
CBECBCCASH27112.3°102.5°
CBCCBECBFH31130.8°137.1°
CBFCBECBCCAS0.4°0.7°
CBECBFCATH31115.3°120.1°
CBECBFCATNBI42.0°50.5°
CBECBFCABH1180.0°60.0°
CBECBFCABH260.0°180.0°
CBECBFCABH360.0°60.1°
CBFCBECAFH81.8°0.5°
CBECBFCATH2879.1°69.2°
CBECBFCATH29163.1°170.1°
CBCCASNBIH26119.7°120.3°
CBCCASNBIH27119.7°120.1°
CBCCASNBICAT34.3°52.6°
CBCCASNBICBD176.8°176.1°
CASCBCCAMH150.0°0.3°
CBCCASH26H27120.8°119.4°
CBFCATNBICAS56.1°71.3°
CBFCATNBIH28121.1°119.8°
CBFCATNBIH29121.1°119.7°
CBFCATNBICBD156.7°165.3°
CATCBFCABH156.7°60.5°
CATCBFCABH2176.7°59.5°
CATCBFCABH363.3°179.5°
CBFCATH28H29116.5°120.6°
CASNBICATCBD147.2°123.4°
CASNBICBDCAI68.1°56.0°
CASNBICBDCAH107.4°123.2°
NBICASH26H27120.8°119.6°
CASNBICATH2865.0°48.4°
CASNBICATH29177.2°169.0°
CATNBICBDCAI143.3°178.9°
CATNBICBDCAH41.2°0.3°
CATNBICASH26154.1°172.9°
CATNBICASH2785.4°67.5°
NBICATH28H29116.5°120.4°
NBICATCBFH31157.3°170.6°
NBICBDCAICAH175.8°179.2°
NBICBDCAINAV176.9°180.0°
NBICBDCAHNAU176.9°179.7°
NBICBDCAHH103.1°0.2°
NBICBDCAIH113.1°0.6°
CBDNBICASH2657.1°63.6°
CBDNBICASH2763.4°55.9°
CBDNBICATH2882.2°75.0°
CBDNBICATH2935.5°45.6°
CBDCAINAVH11180.0°179.4°
CBDCAINAVCAG0.3°0.6°
CAICBDCAHNAU1.1°0.5°
CAICBDCAHH10178.9°179.5°
CAHCBDCAINAV1.1°0.8°
CBDCAHNAUH10180.0°180.0°
CBDCAHNAUCAG0.3°0.0°
CAHCBDCAIH11178.9°179.8°
CAINAVCAGNAU0.6°0.0°
CAINAVCAGH9179.4°179.7°
NAVCAGNAUCAH0.6°0.3°
NAVCAGNAUH9180.0°179.7°
CAGNAVCAIH11179.7°179.9°
CAHNAUCAGH9179.4°180.0°
CAGNAUCAHH10179.7°180.0°
H1CABH2H3120.0°120.0°
H1CABCBFH3161.7°179.8°
H2CABCBFH3158.3°60.2°
H3CABCBFH31178.3°59.8°
H4CACH5H6120.0°119.9°
H7CAECAFH80.6°0.3°
H16CANCAPH2060.4°178.4°
H16CANCAPH2158.9°58.4°
H17CANCAPH2059.8°58.4°
H17CANCAPH21179.1°61.6°
H18CAOCAQH2267.2°61.7°
H18CAOCAQH2352.3°58.4°
H19CAOCAQH2252.4°58.4°
H19CAOCAQH23171.9°178.5°
H28CATCBFH3136.2°50.9°
H29CATCBFH3181.5°69.8°

248942

PDB entries from 2026-02-11

PDB statisticsPDBj update infoContact PDBjnumon