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SummaryGeometryRelated PDB entries

5WL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAASBEsing1.81Å1.75Å
OADSBEdoub1.42Å1.48Å
OACSBEdoub1.42Å1.46Å
SBENASsing1.66Å1.53Å
NASCAVsing1.35Å1.40Å
OABCAVdoub1.22Å1.25Å
CAVCAZsing1.47Å1.44Å
CAZNATsing1.38Å1.38ÅAromatic
CAZCAYdoub1.36Å1.39ÅAromatic
NATCBBsing1.38Å1.33ÅAromatic
CARCAYsing1.51Å1.54Å
CARCAPsing1.53Å1.55Å
CAYCBDsing1.42Å1.41ÅAromatic
CAPCAQsing1.53Å1.47Å
CBBCBDdoub1.41Å1.42ÅAromatic
CBBCAOsing1.39Å1.41ÅAromatic
CBDCANsing1.40Å1.44ÅAromatic
CAQOAUsing1.43Å1.42Å
CAOCAWdoub1.38Å1.41ÅAromatic
OAUCAXsing1.36Å1.40Å
CANCAJdoub1.36Å1.40ÅAromatic
CAWCAJsing1.39Å1.39ÅAromatic
CAWCLsing1.74Å1.74Å
CAMCAGdoub1.36Å1.40ÅAromatic
CAMCBCsing1.40Å1.44ÅAromatic
CAXCBCdoub1.41Å1.44ÅAromatic
CAXCAIsing1.37Å1.40ÅAromatic
CAGCAFsing1.39Å1.39ÅAromatic
CBCCBAsing1.42Å1.38ÅAromatic
CAICAHdoub1.39Å1.42ÅAromatic
CAFCAKdoub1.36Å1.37ÅAromatic
CBACAKsing1.41Å1.40ÅAromatic
CBACALdoub1.41Å1.46ÅAromatic
CAHCALsing1.36Å1.40ÅAromatic
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
NASH4sing0.97Å1.00Å
NATH5sing0.97Å1.00Å
CAOH6sing1.08Å1.08Å
CAJH7sing1.08Å1.08Å
CANH8sing1.08Å1.08Å
CARH9sing1.09Å1.10Å
CARH10sing1.09Å1.10Å
CAPH11sing1.09Å1.10Å
CAPH12sing1.09Å1.10Å
CAQH13sing1.09Å1.10Å
CAQH14sing1.09Å1.10Å
CAMH15sing1.08Å1.08Å
CAGH16sing1.08Å1.08Å
CAFH17sing1.08Å1.08Å
CAKH18sing1.08Å1.08Å
CALH19sing1.08Å1.08Å
CAHH20sing1.08Å1.08Å
CAIH21sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAASBEOAD106.5°110.5°
CAASBEOAC109.2°110.5°
CAASBENAS110.3°104.5°
SBECAAH1109.5°109.5°
SBECAAH2109.5°109.5°
SBECAAH3109.4°109.5°
OADSBEOAC113.2°121.0°
OADSBENAS106.3°104.3°
OACSBENAS111.3°104.3°
SBENASCAV123.9°120.0°
SBENASH4118.0°120.1°
NASCAVOAB119.4°120.0°
NASCAVCAZ116.3°120.0°
CAVNASH4118.1°120.0°
OABCAVCAZ124.2°120.0°
CAVCAZNAT122.5°125.5°
CAVCAZCAY127.9°125.4°
NATCAZCAY109.6°109.1°
CAZNATCBB107.2°108.8°
CAZNATH5126.4°125.6°
CAZCAYCAR125.6°126.2°
CAZCAYCBD107.0°107.7°
NATCBBCBD111.2°107.4°
NATCBBCAO127.7°133.2°
CBBNATH5126.4°125.6°
CAYCARCAP111.4°109.5°
CARCAYCBD127.5°126.1°
CAYCARH9109.0°109.5°
CAYCARH10109.0°109.5°
CARCAPCAQ113.5°109.5°
CAPCARH9109.0°109.5°
CAPCARH10109.0°109.5°
CARCAPH11108.4°109.5°
CARCAPH12108.4°109.5°
CAYCBDCBB105.0°107.0°
CAYCBDCAN135.6°133.4°
CAPCAQOAU112.5°109.5°
CAQCAPH11108.5°109.5°
CAQCAPH12108.4°109.5°
CAPCAQH13108.7°109.5°
CAPCAQH14108.7°109.5°
CBDCBBCAO121.0°119.4°
CBBCBDCAN119.2°119.7°
CBBCAOCAW115.9°119.8°
CBBCAOH6122.1°120.1°
CBDCANCAJ120.8°119.8°
CBDCANH8119.6°120.0°
CAQOAUCAX119.4°117.0°
OAUCAQH13108.7°109.4°
OAUCAQH14108.7°109.5°
CAOCAWCAJ126.0°120.6°
CAOCAWCL116.6°119.7°
CAWCAOH6122.0°120.1°
OAUCAXCBC114.6°120.2°
OAUCAXCAI122.2°120.2°
CANCAJCAW116.9°120.6°
CANCAJH7121.6°119.7°
CAJCANH8119.6°120.1°
CAJCAWCL117.3°119.7°
CAWCAJH7121.5°119.7°
CAGCAMCBC121.4°119.7°
CAMCAGCAF117.3°121.0°
CAGCAMH15119.3°120.2°
CAMCAGH16121.4°119.5°
CAMCBCCAX121.1°121.3°
CAMCBCCBA119.3°119.4°
CBCCAMH15119.3°120.2°
CBCCAXCAI123.1°119.6°
CAXCBCCBA119.6°119.3°
CAXCAICAH118.5°120.9°
CAXCAIH21120.7°119.6°
CAGCAFCAK121.2°121.0°
CAFCAGH16121.3°119.5°
CAGCAFH17119.4°119.5°
CBCCBACAK118.3°119.4°
CBCCBACAL117.1°119.4°
CAICAHCAL118.4°121.1°
CAICAHH20120.8°119.4°
CAHCAIH21120.7°119.5°
CAFCAKCBA121.9°119.6°
CAKCAFH17119.4°119.5°
CAFCAKH18119.0°120.2°
CAKCBACAL124.3°121.3°
CBACAKH18119.1°120.2°
CBACALCAH123.3°119.8°
CBACALH19118.4°120.1°
CAHCALH19118.3°120.1°
CALCAHH20120.8°119.5°
H1CAAH2109.4°109.5°
H1CAAH3109.5°109.5°
H2CAAH3109.5°109.4°
H9CARH10109.5°109.4°
H11CAPH12109.5°109.4°
H13CAQH14109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAASBEOADOAC120.0°131.5°
CAASBEOADNAS117.6°111.8°
CAASBEOACNAS122.0°111.8°
CAASBENASCAV63.4°65.0°
SBECAAH1H2120.0°120.1°
SBECAAH1H3120.0°120.0°
SBECAAH2H3120.0°120.0°
CAASBENASH4116.6°115.0°
OADSBEOACNAS119.6°116.7°
OADSBENASCAV178.4°178.9°
OADSBECAAH1180.0°51.7°
OADSBECAAH260.0°68.4°
OADSBECAAH360.0°171.6°
OADSBENASH41.6°1.1°
OACSBENASCAV57.9°51.1°
OACSBECAAH157.4°171.6°
OACSBECAAH262.5°68.3°
OACSBECAAH3177.5°51.6°
OACSBENASH4122.0°128.9°
SBENASCAVH4180.0°180.0°
SBENASCAVOAB1.6°0.0°
SBENASCAVCAZ177.9°180.0°
NASSBECAAH165.1°60.0°
NASSBECAAH2174.9°180.0°
NASSBECAAH354.9°60.0°
NASCAVOABCAZ179.5°179.9°
NASCAVCAZNAT9.6°0.1°
NASCAVCAZCAY169.6°179.7°
OABCAVCAZNAT169.9°180.0°
OABCAVCAZCAY10.9°0.2°
OABCAVNASH4178.4°180.0°
CAVCAZNATCAY179.4°179.8°
CAVCAZNATCBB178.0°180.0°
CAVCAZCAYCAR0.6°0.0°
CAVCAZCAYCBD179.5°179.9°
CAZCAVNASH42.0°0.0°
CAVCAZNATH52.0°0.0°
CAZNATCBBH5180.0°180.0°
NATCAZCAYCAR178.7°179.8°
NATCAZCAYCBD0.2°0.3°
CAZNATCBBCBD2.4°0.1°
CAZNATCBBCAO179.0°180.0°
CAYCAZNATCBB1.4°0.2°
CAZCAYCARCBD178.7°179.9°
CAZCAYCARCAP92.9°90.0°
CAZCAYCBDCBB1.6°0.4°
CAZCAYCBDCAN176.1°180.0°
CAYCAZNATH5178.6°179.8°
CAZCAYCARH927.3°150.0°
CAZCAYCARH10146.8°29.9°
NATCBBCBDCAY2.5°0.3°
NATCBBCBDCAO176.9°180.0°
NATCBBCBDCAN178.1°179.9°
NATCBBCAOCAW179.9°180.0°
NATCBBCAOH60.2°0.0°
CAYCARCAPH9120.3°120.1°
CAYCARCAPH10120.3°120.0°
CAYCARCAPCAQ68.4°180.0°
CARCAYCBDCBB177.3°179.7°
CARCAYCBDCAN2.8°0.1°
CAYCARH9H10119.1°120.0°
CAYCARCAPH1152.2°59.9°
CAYCARCAPH12171.0°60.0°
CAPCARCAYCBD88.4°89.9°
CARCAPCAQH11120.6°120.0°
CARCAPCAQH12120.6°120.0°
CARCAPCAQOAU69.4°180.0°
CAPCARH9H10119.1°120.0°
CARCAPH11H12118.1°120.0°
CARCAPCAQH1351.1°60.0°
CARCAPCAQH14170.1°60.0°
CAYCBDCBBCAN175.6°179.7°
CAYCBDCBBCAO179.4°179.8°
CAYCBDCANCAJ177.7°179.7°
CAYCBDCANH82.2°0.4°
CBDCAYCARH9151.3°30.2°
CBDCAYCARH1031.9°150.2°
CAPCAQOAUH13120.4°120.0°
CAPCAQOAUH14120.5°120.0°
CAPCAQOAUCAX177.7°180.0°
CAQCAPCARH9171.3°60.0°
CAQCAPCARH1051.9°60.0°
CAQCAPH11H12118.2°120.0°
CAPCAQH13H14118.6°120.0°
CBDCBBCAOCAW3.6°0.0°
CBBCBDCANCAJ3.8°0.1°
CBDCBBNATH5177.6°180.0°
CBDCBBCAOH6176.5°180.0°
CBBCBDCANH8176.2°180.0°
CAOCBBCBDCAN5.0°0.1°
CBBCAOCAWH6180.0°180.0°
CBBCAOCAWCAJ1.0°0.0°
CBBCAOCAWCL179.6°180.0°
CAOCBBNATH51.0°0.0°
CBDCANCAJH8180.0°179.9°
CBDCANCAJCAW1.3°0.1°
CBDCANCAJH7178.7°179.9°
CAQOAUCAXCBC177.5°180.0°
CAQOAUCAXCAI6.2°0.3°
OAUCAQCAPH11170.0°60.0°
OAUCAQCAPH1251.2°60.0°
OAUCAQH13H14118.6°120.0°
CAOCAWCAJCAN0.1°0.0°
CAOCAWCAJCL178.6°180.0°
CAOCAWCAJH7179.9°180.0°
OAUCAXCBCCAM1.2°0.0°
OAUCAXCBCCAI176.3°179.7°
OAUCAXCBCCBA179.0°179.9°
OAUCAXCAICAH177.6°179.9°
CAXOAUCAQH1361.8°60.0°
CAXOAUCAQH1457.3°59.9°
OAUCAXCAIH212.4°0.0°
CANCAJCAWH7180.0°180.0°
CANCAJCAWCL178.5°180.0°
CAJCAWCAOH6179.0°180.0°
CAWCAJCANH8178.7°180.0°
CLCAWCAOH60.4°0.0°
CLCAWCAJH71.5°0.0°
CAGCAMCBCH15180.0°180.0°
CAGCAMCBCCAX178.4°179.9°
CAMCAGCAFH16180.0°179.8°
CAGCAMCBCCBA1.3°0.0°
CAMCAGCAFCAK3.5°0.1°
CAMCAGCAFH17176.5°180.0°
CAMCBCCAXCBA179.7°180.0°
CAMCBCCAXCAI177.5°179.8°
CBCCAMCAGCAF1.0°0.1°
CAMCBCCBACAK2.8°0.1°
CAMCBCCBACAL177.3°179.9°
CBCCAMCAGH16179.0°179.9°
CBCCAXCAICAH1.6°0.4°
CAXCBCCBACAK177.5°180.0°
CAXCBCCBACAL2.9°0.0°
CAXCBCCAMH151.6°0.0°
CBCCAXCAIH21178.4°179.8°
CAICAXCBCCBA2.7°0.2°
CAXCAICAHH21180.0°179.8°
CAXCAICAHCAL0.9°0.4°
CAXCAICAHH20179.1°179.8°
CAGCAFCAKH17180.0°179.9°
CAGCAFCAKCBA7.9°0.0°
CAFCAGCAMH15179.0°179.9°
CAGCAFCAKH18172.0°180.0°
CBCCBACAKCAF7.4°0.1°
CBCCBACAKCAL174.1°180.0°
CBCCBACALCAH2.4°0.0°
CBACBCCAMH15178.7°180.0°
CBCCBACAKH18172.5°180.0°
CBCCBACALH19177.6°179.9°
CAICAHCALCBA1.4°0.2°
CAICAHCALH20180.0°179.8°
CAICAHCALH19178.6°179.9°
CAFCAKCBAH18180.0°179.9°
CAFCAKCBACAL178.5°179.9°
CAKCAFCAGH16176.5°179.9°
CAKCBACALCAH176.6°180.0°
CBACAKCAFH17172.1°179.9°
CAKCBACALH193.4°0.1°
CBACALCAHH19180.0°179.9°
CALCBACAKH181.6°0.0°
CBACALCAHH20178.6°180.0°
CALCAHCAIH21179.1°179.7°
H1CAAH2H3120.0°119.9°
H7CAJCANH81.3°0.0°
H9CARCAPH1168.0°NaN°
H9CARCAPH1250.7°60.0°
H10CARCAPH11172.5°60.0°
H10CARCAPH1268.7°180.0°
H11CAPCAQH1369.5°180.0°
H11CAPCAQH1449.5°60.0°
H12CAPCAQH13171.7°60.0°
H12CAPCAQH1469.3°180.0°
H15CAMCAGH161.0°0.1°
H16CAGCAFH173.5°0.2°
H17CAFCAKH187.9°0.0°
H19CALCAHH201.4°0.1°
H20CAHCAIH211.0°0.0°

248335

PDB entries from 2026-01-28

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