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5VY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C10C09doub1.39Å1.41ÅAromatic
C10N11sing1.40Å1.39Å
C10C18sing1.39Å1.42ÅAromatic
C13C12sing1.53Å1.54Å
C13N14sing1.47Å1.49Å
C15N14sing1.47Å1.48Å
C17N11sing1.47Å1.45Å
C17C16sing1.53Å1.55Å
C21C02doub1.40Å1.41ÅAromatic
C21N20sing1.33Å1.37ÅAromatic
C21N22sing1.39Å1.37Å
C24C23doub1.39Å1.40ÅAromatic
C24C25sing1.39Å1.40ÅAromatic
C28S27sing1.81Å1.83Å
C28C29sing1.53Å1.56Å
C28C30sing1.53Å1.56Å
C28C31sing1.53Å1.55Å
C01C02sing1.51Å1.49Å
C02C03sing1.38Å1.41ÅAromatic
C03N04doub1.32Å1.33ÅAromatic
N04C05sing1.32Å1.35ÅAromatic
C05N06sing1.38Å1.36Å
C05N20doub1.32Å1.35ÅAromatic
N06C07sing1.40Å1.37Å
C07C08doub1.39Å1.41ÅAromatic
C07C19sing1.39Å1.41ÅAromatic
C08C09sing1.38Å1.41ÅAromatic
N11C12sing1.47Å1.45Å
N14C16sing1.47Å1.49Å
C18C19doub1.38Å1.42ÅAromatic
N22C23sing1.40Å1.38Å
C23C36sing1.39Å1.42ÅAromatic
C25N26sing1.40Å1.35Å
C25C34doub1.39Å1.41ÅAromatic
N26S27sing1.66Å1.70Å
S27O32doub1.42Å1.59Å
S27O33doub1.42Å1.58Å
C34C35sing1.38Å1.41ÅAromatic
C35C36doub1.38Å1.40ÅAromatic
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C15H153sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C24H241sing1.08Å1.08Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C03H031sing1.08Å1.08Å
N06H061sing0.97Å1.00Å
C08H081sing1.08Å1.08Å
C09H091sing1.08Å1.08Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C18H181sing1.08Å1.08Å
C19H191sing1.08Å1.08Å
N22H221sing0.97Å1.00Å
N26H261sing0.97Å1.00Å
C29H291sing1.09Å1.10Å
C29H292sing1.09Å1.10Å
C29H293sing1.09Å1.10Å
C30H301sing1.09Å1.10Å
C30H302sing1.09Å1.10Å
C30H303sing1.09Å1.10Å
C31H311sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C31H313sing1.09Å1.10Å
C34H341sing1.08Å1.08Å
C35H351sing1.08Å1.08Å
C36H361sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C09C10N11119.8°120.0°
C09C10C18117.0°120.0°
C10C09C08122.2°120.0°
C10C09H091118.9°120.0°
N11C10C18123.2°120.0°
C10N11C17115.4°111.0°
C10N11C12113.3°111.0°
C10C18C19121.1°120.0°
C10C18H181119.4°120.0°
C12C13N14111.8°109.3°
C13C12N11116.9°109.3°
C12C13H131108.9°109.5°
C12C13H132108.9°109.5°
C13C12H121107.6°109.5°
C13C12H122107.6°109.5°
C13N14C15113.6°111.0°
C13N14C16115.9°110.9°
N14C13H131108.9°109.5°
N14C13H132108.9°109.5°
C15N14C16114.1°111.0°
N14C15H151109.5°109.4°
N14C15H152109.5°109.4°
N14C15H153109.4°109.4°
N11C17C16116.4°109.4°
C17N11C12118.0°110.9°
N11C17H171107.7°109.5°
N11C17H172107.7°109.5°
C17C16N14112.6°109.3°
C16C17H171107.7°109.5°
C16C17H172107.7°109.5°
C17C16H161108.7°109.5°
C17C16H162108.7°109.5°
C02C21N20117.9°119.0°
C02C21N22121.4°120.5°
C21C02C01123.9°120.8°
C21C02C03116.7°118.5°
N20C21N22120.7°120.5°
C21N20C05124.0°120.6°
C21N22C23127.6°120.0°
C21N22H221116.2°120.0°
C23C24C25121.5°119.9°
C24C23N22124.0°120.1°
C24C23C36118.0°120.0°
C23C24H241119.2°120.1°
C24C25N26123.2°120.0°
C24C25C34119.7°119.9°
C25C24H241119.3°120.0°
S27C28C29107.3°109.5°
S27C28C30108.4°109.5°
S27C28C31102.3°109.5°
C28S27N26105.5°104.5°
C28S27O32111.9°110.5°
C28S27O33106.3°110.6°
C29C28C30112.2°109.5°
C29C28C31113.2°109.4°
C28C29H291109.5°109.5°
C28C29H292109.5°109.5°
C28C29H293109.5°109.5°
C30C28C31112.7°109.5°
C28C30H301109.5°109.5°
C28C30H302109.5°109.5°
C28C30H303109.4°109.5°
C28C31H311109.5°109.5°
C28C31H312109.4°109.5°
C28C31H313109.4°109.5°
C01C02C03119.5°120.8°
C02C01H011109.5°109.4°
C02C01H012109.5°109.4°
C02C01H013109.4°109.4°
C02C03N04121.5°119.3°
C02C03H031119.2°120.3°
C03N04C05122.5°120.9°
N04C03H031119.3°120.4°
N04C05N06120.6°119.1°
N04C05N20117.3°121.7°
N06C05N20122.1°119.2°
C05N06C07131.5°120.1°
C05N06H061114.3°120.0°
N06C07C08125.6°120.1°
N06C07C19116.4°120.0°
C07N06H061114.3°120.0°
C08C07C19118.1°120.0°
C07C08C09120.5°120.0°
C07C08H081119.8°120.0°
C07C19C18121.2°120.0°
C07C19H191119.4°120.0°
C09C08H081119.7°120.0°
C08C09H091118.9°120.0°
N11C12H121107.6°109.5°
N11C12H122107.6°109.5°
N14C16H161108.7°109.4°
N14C16H162108.7°109.5°
C19C18H181119.5°120.0°
C18C19H191119.4°120.0°
N22C23C36118.1°120.0°
C23N22H221116.2°120.0°
C23C36C35121.4°120.1°
C23C36H361119.3°120.0°
N26C25C34117.1°120.1°
C25N26S27126.4°120.0°
C25N26H261105.1°120.0°
C25C34C35120.0°120.1°
C25C34H341120.0°119.9°
N26S27O32111.4°104.3°
N26S27O33106.1°104.3°
S27N26H261105.1°120.0°
O32S27O33114.9°121.0°
C34C35C36119.4°120.1°
C35C34H341120.0°120.0°
C34C35H351120.3°119.9°
C36C35H351120.3°120.0°
C35C36H361119.3°119.9°
H131C13H132109.4°109.5°
H151C15H152109.5°109.5°
H151C15H153109.5°109.5°
H152C15H153109.5°109.5°
H171C17H172109.5°109.5°
H011C01H012109.5°109.5°
H011C01H013109.5°109.5°
H012C01H013109.5°109.5°
H121C12H122109.5°109.6°
H161C16H162109.5°109.6°
H291C29H292109.5°109.5°
H291C29H293109.5°109.4°
H292C29H293109.5°109.5°
H301C30H302109.5°109.5°
H301C30H303109.5°109.4°
H302C30H303109.5°109.5°
H311C31H312109.4°109.5°
H311C31H313109.5°109.5°
H312C31H313109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C09C10N11C18178.3°179.8°
C09C10N11C17176.7°180.0°
C10C09C08C071.0°0.5°
C10C09C08H091180.0°179.9°
C09C10N11C1236.3°56.2°
C09C10C18C191.0°0.0°
C10C09C08H081179.0°179.5°
C09C10C18H181179.0°179.9°
C10N11C12C13170.9°176.8°
C10N11C17C12138.4°123.8°
C10N11C17C16176.6°176.8°
N11C10C09C08179.6°180.0°
N11C10C18C19179.4°179.7°
C10N11C17H17162.4°56.8°
C10N11C17H17255.6°63.2°
N11C10C09H0910.4°0.1°
C10N11C12H12168.0°56.9°
C10N11C12H12249.9°63.3°
N11C10C18H1810.6°0.3°
C18C10N11C171.6°0.3°
C10C18C19C070.7°0.0°
C18C10C09C081.2°0.2°
C18C10N11C12142.0°124.1°
C10C18C19H181180.0°180.0°
C18C10C09H091178.8°179.7°
C10C18C19H191179.3°179.7°
C12C13N14H131120.4°119.9°
C12C13N14H132120.4°120.0°
C12C13N14C15174.3°64.5°
C13C12N11C1731.7°59.3°
C13C12N11H121121.0°119.9°
C13C12N11H122121.1°120.0°
C12C13N14C1650.7°59.4°
C12C13H131H132118.9°120.1°
C13C12H121H122116.6°120.1°
C13N14C15C16135.9°123.8°
C13N14C16C1744.5°59.3°
N14C13C12N1112.0°58.4°
N14C13H131H132118.9°120.1°
C13N14C15H151180.0°60.0°
C13N14C15H15260.0°180.0°
C13N14C15H15360.0°60.0°
N14C13C12H121109.1°178.4°
N14C13C12H122133.0°61.6°
C13N14C16H161164.9°60.6°
C13N14C16H16276.0°179.3°
C15N14C16C17179.3°64.6°
C15N14C13H13165.3°55.4°
C15N14C13H13253.9°175.5°
N14C15H151H152120.0°119.9°
N14C15H151H153120.0°120.0°
N14C15H152H153120.0°119.9°
C15N14C16H16160.2°175.5°
C15N14C16H16258.8°55.4°
N11C17C16H171121.0°120.0°
N11C17C16H172121.0°120.0°
N11C17C16N140.1°58.4°
N11C17H171H172116.9°120.1°
C17N11C12H121152.7°179.3°
C17N11C12H12289.4°60.6°
N11C17C16H161120.3°61.5°
N11C17C16H162120.6°178.3°
C16C17N11C1238.1°59.3°
C17C16N14H161120.5°119.9°
C17C16N14H162120.5°119.9°
C16C17H171H172116.8°120.0°
C17C16H161H162118.6°120.1°
C02C21N20N22178.5°179.7°
C21C02C01C03179.4°180.0°
C21C02C03N040.9°0.0°
C02C21N20C051.6°0.0°
C02C21N22C23177.8°178.6°
C21C02C01H01189.7°90.0°
C21C02C01H012150.3°150.0°
C21C02C01H01330.3°30.0°
C21C02C03H031179.1°180.0°
C02C21N22H2212.2°1.5°
N20C21C02C01179.7°180.0°
N20C21C02C030.8°0.0°
C21N20C05N040.7°0.0°
C21N20C05N06179.7°180.0°
N20C21N22C230.7°1.7°
N20C21N22H221179.4°178.2°
C21N22C23C24138.6°37.1°
N22C21C02C011.3°0.2°
N22C21C02C03179.3°179.7°
N22C21N20C05179.9°179.7°
C21N22C23H221180.0°179.9°
C21N22C23C3643.1°142.8°
C23C24C25H241180.0°179.7°
C24C23N22C36178.3°180.0°
C23C24C25N26179.5°180.0°
C23C24C25C340.4°0.0°
C24C23C36C350.7°0.1°
C24C23N22H22141.4°142.8°
C24C23C36H361179.3°180.0°
C25C24C23N22179.4°180.0°
C25C24C23C361.0°0.0°
C24C25N26C34179.9°179.9°
C24C25N26S2726.9°130.8°
C24C25C34C350.7°0.0°
C24C25N26H26195.4°49.2°
C24C25C34H341179.3°180.0°
S27C28C29C30119.0°120.0°
S27C28C29C31112.2°120.0°
S27C28C30C31112.5°120.1°
C28S27N26C25106.8°69.4°
C28S27N26O32121.7°116.0°
C28S27N26O33112.6°116.1°
C28S27O32O33121.4°131.5°
C28S27N26H26115.5°110.6°
S27C28C29H291180.0°60.0°
S27C28C29H29260.0°180.0°
S27C28C29H29360.0°60.0°
S27C28C30H301180.0°60.0°
S27C28C30H30260.0°180.0°
S27C28C30H30360.0°59.9°
S27C28C31H311180.0°64.8°
S27C28C31H31260.0°175.1°
S27C28C31H31360.0°55.2°
C29C28C30C31129.1°119.9°
C29C28S27N2666.7°66.0°
C29C28S27O3254.5°177.6°
C29C28S27O33179.2°45.7°
C28C29H291H292120.0°120.0°
C28C29H291H293120.0°120.0°
C28C29H292H293120.0°120.0°
C29C28C30H30161.7°180.0°
C29C28C30H30258.4°60.0°
C29C28C30H303178.3°60.1°
C29C28C31H31164.8°55.2°
C29C28C31H312175.2°64.9°
C29C28C31H31355.2°175.2°
C30C28S27N2654.6°174.0°
C30C28S27O32175.9°62.4°
C30C28S27O3357.8°74.3°
C30C28C29H29161.0°60.1°
C30C28C29H292179.0°60.0°
C30C28C29H29359.0°180.0°
C28C30H301H302120.0°120.0°
C28C30H301H303120.0°120.0°
C28C30H302H303120.0°120.0°
C30C28C31H31163.8°175.2°
C30C28C31H31256.2°55.1°
C30C28C31H313176.2°64.8°
C31C28S27N26173.9°53.9°
C31C28S27O3264.8°57.7°
C31C28S27O3361.5°165.6°
C31C28C29H29167.8°180.0°
C31C28C29H29252.2°60.0°
C31C28C29H293172.1°60.0°
C31C28C30H30167.4°60.1°
C31C28C30H302172.5°60.0°
C31C28C30H30352.5°180.0°
C28C31H311H312120.0°120.1°
C28C31H311H313120.0°120.0°
C28C31H312H313120.0°120.0°
C01C02C03N04178.6°180.0°
C02C01H011H012120.0°119.9°
C02C01H011H013120.0°120.0°
C02C01H012H013120.0°120.0°
C01C02C03H0311.4°0.0°
C02C03N04H031180.0°180.0°
C02C03N04C051.9°0.0°
C03C02C01H01189.7°90.0°
C03C02C01H01230.3°30.0°
C03C02C01H013150.2°150.0°
C03N04C05N06177.9°180.0°
C03N04C05N201.1°0.0°
N04C05N06N20179.0°179.9°
N04C05N06C07178.6°3.6°
C05N04C03H031178.1°180.0°
N04C05N06H0611.4°176.4°
C05N06C07H061180.0°180.0°
C05N06C07C084.2°144.1°
C05N06C07C19176.5°36.5°
N20C05N06C072.4°176.5°
N20C05N06H061177.5°3.6°
N06C07C08C19179.3°179.4°
N06C07C08C09178.7°180.0°
N06C07C19C18178.9°179.8°
N06C07C08H0811.3°0.0°
N06C07C19H1911.1°0.6°
C07C08C09H081180.0°179.9°
C08C07C19C180.4°0.3°
C08C07N06H061175.8°35.9°
C07C08C09H091179.0°179.4°
C08C07C19H191179.6°179.9°
C19C07C08C090.6°0.5°
C07C19C18H191180.0°179.6°
C19C07N06H0613.5°143.5°
C19C07C08H081179.4°179.4°
C07C19C18H181179.3°180.0°
N11C12C13H131108.4°178.3°
N11C12C13H132132.3°61.6°
C12N11C17H171159.1°179.3°
C12N11C17H17282.8°60.6°
N11C12H121H122116.7°120.1°
C16N14C13H13169.7°179.3°
C16N14C13H132171.0°60.6°
C16N14C15H15144.2°176.2°
C16N14C15H15275.9°56.2°
C16N14C15H153164.1°63.8°
N14C16C17H171121.1°178.4°
N14C16C17H172120.9°61.6°
N14C16H161H162118.6°120.1°
N22C23C36C35179.2°180.0°
N22C23C24H2410.6°0.2°
N22C23C36H3610.8°0.0°
C23C36C35C340.2°0.1°
C23C36C35H361180.0°179.9°
C36C23C24H241179.0°179.7°
C36C23N22H221136.9°37.3°
C23C36C35H351179.8°179.9°
C25N26S27H261122.3°180.0°
C25N26S27O3214.9°174.6°
C25N26S27O33140.7°46.7°
N26C25C34C35179.5°179.9°
N26C25C24H2410.5°0.3°
N26C25C34H3410.5°0.0°
C34C25N26S27152.9°49.1°
C25C34C35H341180.0°180.0°
C25C34C35C360.9°0.1°
C34C25C24H241179.6°179.7°
C34C25N26H26184.8°130.8°
C25C34C35H351179.1°179.9°
N26S27O32O33120.7°116.8°
O32S27N26H261137.2°5.4°
O33S27N26H26197.1°133.3°
C34C35C36H351180.0°179.8°
C34C35C36H361179.7°180.0°
C36C35C34H341179.1°179.9°
H131C13C12H121130.5°61.7°
H131C13C12H12212.7°58.4°
H132C13C12H12111.3°58.3°
H132C13C12H122106.6°178.4°
H151C15H152H153120.0°120.1°
H171C17C16H1610.7°58.5°
H171C17C16H162118.4°61.7°
H172C17C16H161118.7°178.5°
H172C17C16H1620.4°58.4°
H011C01H012H013120.0°120.1°
H081C08C09H0911.0°0.7°
H181C18C19H1910.7°0.4°
H291C29H292H293120.0°119.9°
H301C30H302H303120.0°120.0°
H311C31H312H313120.0°120.0°
H341C34C35H3510.9°0.1°
H351C35C36H3610.3°0.1°

224004

PDB entries from 2024-08-21

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