5VV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| ND2 | CG | sing | 1.35Å | 1.44Å | |
| OD1 | CG | doub | 1.21Å | 1.41Å | |
| CG | CB | sing | 1.51Å | 1.54Å | |
| O11 | C9 | doub | 1.21Å | 1.26Å | |
| CB | CA | sing | 1.53Å | 1.52Å | |
| N | C9 | sing | 1.35Å | 1.34Å | |
| N | CA | sing | 1.46Å | 1.51Å | |
| C9 | O10 | sing | 1.35Å | 1.27Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| N | H | sing | 0.97Å | 1.00Å | |
| O10 | H10 | sing | 0.97Å | 0.95Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | H4 | sing | 1.09Å | 1.10Å | |
| CB | H5 | sing | 1.09Å | 1.10Å | |
| ND2 | H6 | sing | 0.97Å | 1.00Å | |
| ND2 | H7 | sing | 0.97Å | 1.00Å | |
| C | OXT | sing | 1.34Å | 44.94Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| ND2 | CG | OD1 | 122.1° | 120.0° |
| ND2 | CG | CB | 116.0° | 120.0° |
| CG | ND2 | H6 | 120.0° | 120.0° |
| CG | ND2 | H7 | 120.0° | 120.0° |
| OD1 | CG | CB | 121.9° | 120.0° |
| CG | CB | CA | 120.9° | 109.5° |
| CG | CB | H4 | 106.6° | 109.5° |
| CG | CB | H5 | 106.6° | 109.5° |
| O11 | C9 | N | 119.5° | 120.0° |
| O11 | C9 | O10 | 118.2° | 120.0° |
| CB | CA | N | 110.5° | 109.5° |
| CB | CA | C | 106.6° | 109.5° |
| CB | CA | HA | 109.1° | 109.5° |
| CA | CB | H4 | 106.6° | 109.5° |
| CA | CB | H5 | 106.5° | 109.5° |
| C9 | N | CA | 124.8° | 120.0° |
| N | C9 | O10 | 122.2° | 120.0° |
| C9 | N | H | 117.6° | 120.0° |
| N | CA | C | 112.4° | 109.5° |
| CA | N | H | 117.6° | 120.0° |
| N | CA | HA | 109.2° | 109.4° |
| C9 | O10 | H10 | 109.5° | 117.0° |
| CA | C | O | 116.5° | 120.0° |
| C | CA | HA | 108.8° | 109.5° |
| CA | C | OXT | 5.8° | 120.0° |
| O | C | OXT | 113.6° | 120.0° |
| H4 | CB | H5 | 109.5° | 109.5° |
| H6 | ND2 | H7 | 120.0° | 120.1° |
| C | OXT | HXT | 90.0° | 116.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| ND2 | CG | OD1 | CB | 178.3° | 180.0° |
| ND2 | CG | CB | CA | 175.9° | 180.0° |
| ND2 | CG | CB | H4 | 62.5° | 60.0° |
| ND2 | CG | CB | H5 | 54.3° | 60.0° |
| CG | ND2 | H6 | H7 | 180.0° | 179.9° |
| OD1 | CG | CB | CA | 5.7° | 0.0° |
| OD1 | CG | CB | H4 | 115.9° | 120.0° |
| OD1 | CG | CB | H5 | 127.3° | 120.0° |
| OD1 | CG | ND2 | H6 | 0.0° | 180.0° |
| OD1 | CG | ND2 | H7 | 180.0° | 0.1° |
| CG | CB | CA | H4 | 121.6° | 120.0° |
| CG | CB | CA | H5 | 121.6° | 120.0° |
| CG | CB | CA | N | 81.7° | 65.0° |
| CG | CB | CA | C | 155.8° | 175.0° |
| CG | CB | CA | HA | 38.4° | 55.0° |
| CG | CB | H4 | H5 | 114.9° | 120.0° |
| CB | CG | ND2 | H6 | 178.4° | 0.0° |
| CB | CG | ND2 | H7 | 1.6° | 180.0° |
| O11 | C9 | N | O10 | 179.8° | 180.0° |
| O11 | C9 | N | CA | 168.4° | 0.0° |
| O11 | C9 | N | H | 11.6° | 179.7° |
| O11 | C9 | O10 | H10 | 0.0° | 0.0° |
| CB | CA | N | C9 | 178.4° | 155.0° |
| CB | CA | N | C | 119.0° | 120.0° |
| CB | CA | N | HA | 120.1° | 120.0° |
| CB | CA | C | HA | 117.6° | 120.0° |
| CB | CA | C | O | 102.0° | 120.0° |
| CB | CA | N | H | 1.6° | 24.8° |
| CA | CB | H4 | H5 | 114.8° | 120.0° |
| CB | CA | C | OXT | 41.9° | 59.9° |
| C9 | N | CA | H | 180.0° | 179.8° |
| C9 | N | CA | C | 59.4° | 85.0° |
| N | C9 | O10 | H10 | 179.8° | 180.0° |
| C9 | N | CA | HA | 61.5° | 35.0° |
| CA | N | C9 | O10 | 11.4° | 180.0° |
| N | CA | C | HA | 121.2° | 120.0° |
| N | CA | C | O | 136.7° | 0.1° |
| N | CA | CB | H4 | 156.6° | 55.0° |
| N | CA | CB | H5 | 39.8° | 175.0° |
| N | CA | C | OXT | 163.2° | 180.0° |
| O10 | C9 | N | H | 168.6° | 0.3° |
| CA | C | O | OXT | 5.5° | 179.9° |
| C | CA | N | H | 120.6° | 95.3° |
| C | CA | CB | H4 | 34.2° | 65.0° |
| C | CA | CB | H5 | 82.6° | 55.0° |
| CA | C | OXT | HXT | 90.0° | 180.0° |
| O | C | CA | HA | 15.6° | 120.1° |
| O | C | OXT | HXT | 90.0° | 0.1° |
| H | N | CA | HA | 118.5° | 144.7° |
| HA | CA | CB | H4 | 83.2° | 175.0° |
| HA | CA | CB | H5 | 160.0° | 65.0° |
| HA | CA | C | OXT | 75.7° | 60.0° |
