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SummaryGeometryRelated PDB entries

5VU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C02doub1.22Å1.22Å
C02N03sing1.35Å1.44Å
C02N12sing1.35Å1.43Å
N03C04sing1.40Å1.45Å
C04C05sing1.39Å1.38ÅAromatic
C04C10doub1.39Å1.38ÅAromatic
C05C06doub1.38Å1.39ÅAromatic
C06C07sing1.38Å1.40ÅAromatic
C07F08sing1.35Å1.33Å
C07C09doub1.39Å1.38ÅAromatic
C09C10sing1.38Å1.39ÅAromatic
C10F11sing1.35Å1.33Å
N12C13sing1.47Å1.44Å
N12C16sing1.47Å1.43Å
C13C14sing1.54Å1.49Å
C14C15sing1.55Å1.49Å
C15C16sing1.55Å1.49Å
N03H03sing0.97Å1.00Å
C05H05sing1.08Å1.08Å
C06H06sing1.08Å1.08Å
C09H09sing1.08Å1.08Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O01C02N03122.4°120.0°
O01C02N12118.5°120.0°
N03C02N12119.1°120.0°
C02N03C04128.8°120.0°
C02N03H03115.6°120.0°
C02N12C13124.4°125.7°
C02N12C16125.8°125.6°
N03C04C05124.8°120.1°
N03C04C10116.5°120.0°
C04N03H03115.6°120.0°
C05C04C10118.7°119.9°
C04C05C06120.5°120.0°
C04C05H05119.7°120.0°
C04C10C09121.8°119.9°
C04C10F11117.9°120.0°
C05C06C07119.9°120.1°
C06C05H05119.8°120.0°
C05C06H06120.0°120.0°
C06C07F08121.2°120.0°
C06C07C09119.8°120.1°
C07C06H06120.0°119.9°
F08C07C09119.0°119.9°
C07C09C10119.3°120.0°
C07C09H09120.4°120.0°
C09C10F11120.3°120.0°
C10C09H09120.4°120.0°
C13N12C16109.8°108.7°
N12C13C14107.7°107.3°
N12C13H131109.9°109.9°
N12C13H132109.9°109.9°
N12C16C15107.7°104.7°
N12C16H161109.9°110.3°
N12C16H162109.9°110.4°
C13C14C15105.7°102.9°
C14C13H131109.9°109.9°
C14C13H132109.9°109.8°
C13C14H141110.4°110.7°
C13C14H142110.4°110.7°
C14C15C16106.3°101.5°
C15C14H141110.4°110.7°
C15C14H142110.4°110.8°
C14C15H151110.3°111.0°
C14C15H152110.3°111.0°
C15C16H161109.9°110.5°
C15C16H162109.9°110.3°
C16C15H151110.2°111.2°
C16C15H152110.3°110.9°
H131C13H132109.4°110.0°
H161C16H162109.4°110.4°
H141C14H142109.5°110.8°
H151C15H152109.5°110.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02N03N12179.1°179.7°
O01C02N03C041.0°4.5°
O01C02N12C130.6°0.0°
O01C02N12C16179.8°179.7°
O01C02N03H03179.0°175.6°
C02N03C04H03180.0°180.0°
C02N03C04C0522.4°34.7°
C02N03C04C10159.9°145.6°
N03C02N12C13179.7°179.7°
N03C02N12C161.1°0.6°
N12C02N03C04179.9°175.8°
C02N12C13C16179.3°179.8°
C02N12C13C14171.7°179.0°
C02N12C16C15177.9°155.8°
N12C02N03H030.1°4.2°
C02N12C13H13168.6°59.5°
C02N12C13H13252.0°61.7°
C02N12C16H16162.4°85.3°
C02N12C16H16258.1°37.0°
N03C04C05C10177.7°179.7°
N03C04C05C06178.4°180.0°
N03C04C10C09178.8°179.7°
N03C04C10F111.5°0.0°
N03C04C05H051.6°0.1°
C04C05C06H05180.0°179.9°
C04C05C06C070.2°0.0°
C05C04C10C090.8°0.6°
C05C04C10F11179.4°179.6°
C05C04N03H03157.6°145.4°
C04C05C06H06179.9°180.0°
C10C04C05C060.7°0.3°
C04C10C09C070.4°0.6°
C04C10C09F11179.8°179.7°
C10C04N03H0320.1°34.3°
C10C04C05H05179.3°179.7°
C04C10C09H09179.5°179.7°
C05C06C07H06180.0°180.0°
C05C06C07F08179.8°180.0°
C05C06C07C090.3°0.0°
C06C07F08C09179.6°180.0°
C06C07C09C100.1°0.3°
C07C06C05H05179.9°179.9°
C06C07C09H09179.9°180.0°
F08C07C09C10179.7°179.7°
F08C07C06H060.2°0.0°
F08C07C09H090.3°0.0°
C07C09C10H09180.0°179.7°
C07C09C10F11179.8°179.7°
C09C07C06H06179.7°180.0°
F11C10C09H090.2°0.1°
N12C13C14H131119.7°119.5°
N12C13C14H132119.8°119.4°
N12C13C14C1515.7°22.3°
C13N12C16C151.4°24.4°
N12C13H131H132120.8°121.1°
C13N12C16H161118.3°94.5°
C13N12C16H162121.1°143.2°
N12C13C14H141135.0°140.6°
N12C13C14H142103.7°96.2°
C16N12C13C149.0°1.2°
N12C16C15C1411.1°37.3°
N12C16C15H161119.7°118.8°
N12C16C15H162119.7°118.8°
C16N12C13H131110.7°120.7°
C16N12C13H132128.7°118.1°
N12C16H161H162120.8°122.3°
N12C16C15H151108.4°80.8°
N12C16C15H152130.6°155.3°
C13C14C15H141119.4°118.3°
C13C14C15H142119.4°118.4°
C13C14C15C1616.2°35.7°
C14C13H131H132120.8°121.0°
C13C14H141H142121.8°123.2°
C13C14C15H151103.2°82.6°
C13C14C15H152135.7°153.6°
C14C15C16H151119.5°118.2°
C14C15C16H152119.5°117.9°
C15C14C13H131104.1°97.2°
C15C14C13H132135.4°141.6°
C14C15C16H161108.6°81.5°
C14C15C16H162130.9°156.1°
C15C14H141H142121.7°123.3°
C14C15H151H152121.5°123.9°
C15C16H161H162120.8°122.3°
C16C15C14H141135.6°154.0°
C16C15C14H142103.2°82.7°
C16C15H151H152121.4°123.9°
H05C05C06H060.1°0.1°
H131C13C14H14115.3°21.1°
H131C13C14H142136.5°144.4°
H132C13C14H141105.2°100.1°
H132C13C14H14216.0°23.2°
H161C16C15H151131.9°160.3°
H161C16C15H15210.9°36.4°
H162C16C15H15111.4°37.9°
H162C16C15H152109.6°86.0°
H141C14C15H15116.1°35.7°
H141C14C15H152104.9°88.1°
H142C14C15H151137.3°159.0°
H142C14C15H15216.3°35.2°

248636

PDB entries from 2026-02-04

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