5VM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CLB | CAH | sing | 1.74Å | 1.70Å | |
| CAE | CAH | doub | 1.38Å | 1.39Å | Aromatic |
| CAE | CAJ | sing | 1.39Å | 1.34Å | Aromatic |
| NAF | CAJ | sing | 1.39Å | 1.34Å | |
| NAF | CAI | sing | 1.35Å | 1.33Å | |
| CAH | CAC | sing | 1.39Å | 1.38Å | Aromatic |
| CAJ | CAK | doub | 1.39Å | 1.35Å | Aromatic |
| CAI | SAA | doub | 1.71Å | 1.76Å | |
| CAI | OAG | sing | 1.34Å | 1.33Å | |
| CAC | CAD | doub | 1.38Å | 1.37Å | Aromatic |
| CAK | OAG | sing | 1.36Å | 1.34Å | |
| CAK | CAD | sing | 1.39Å | 1.34Å | Aromatic |
| CAD | H1 | sing | 1.08Å | 1.08Å | |
| CAC | H2 | sing | 1.08Å | 1.08Å | |
| CAE | H3 | sing | 1.08Å | 1.08Å | |
| NAF | H4 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CLB | CAH | CAE | 120.9° | 120.0° |
| CLB | CAH | CAC | 118.8° | 119.9° |
| CAH | CAE | CAJ | 118.8° | 119.8° |
| CAE | CAH | CAC | 120.3° | 120.2° |
| CAH | CAE | H3 | 120.6° | 120.1° |
| CAE | CAJ | NAF | 131.7° | 133.3° |
| CAE | CAJ | CAK | 120.3° | 120.1° |
| CAJ | CAE | H3 | 120.6° | 120.1° |
| CAJ | NAF | CAI | 106.4° | 107.5° |
| NAF | CAJ | CAK | 107.9° | 106.6° |
| CAJ | NAF | H4 | 126.8° | 126.2° |
| NAF | CAI | SAA | 126.7° | 125.2° |
| NAF | CAI | OAG | 111.0° | 109.5° |
| CAI | NAF | H4 | 126.8° | 126.3° |
| CAH | CAC | CAD | 119.2° | 120.3° |
| CAH | CAC | H2 | 120.4° | 119.9° |
| CAJ | CAK | OAG | 108.6° | 107.3° |
| CAJ | CAK | CAD | 122.6° | 119.7° |
| SAA | CAI | OAG | 122.3° | 125.3° |
| CAI | OAG | CAK | 106.1° | 109.2° |
| CAC | CAD | CAK | 118.9° | 119.9° |
| CAC | CAD | H1 | 120.6° | 120.0° |
| CAD | CAC | H2 | 120.4° | 119.8° |
| OAG | CAK | CAD | 128.8° | 133.0° |
| CAK | CAD | H1 | 120.5° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CLB | CAH | CAE | CAC | 179.0° | 180.0° |
| CLB | CAH | CAE | CAJ | 179.1° | 180.0° |
| CLB | CAH | CAC | CAD | 178.8° | 180.0° |
| CLB | CAH | CAC | H2 | 1.1° | 0.0° |
| CLB | CAH | CAE | H3 | 0.9° | 0.0° |
| CAH | CAE | CAJ | H3 | 180.0° | 180.0° |
| CAH | CAE | CAJ | NAF | 179.5° | 179.9° |
| CAH | CAE | CAJ | CAK | 0.4° | 0.0° |
| CAE | CAH | CAC | CAD | 0.2° | 0.0° |
| CAE | CAH | CAC | H2 | 179.9° | 180.0° |
| CAE | CAJ | NAF | CAK | 179.3° | 179.9° |
| CAE | CAJ | NAF | CAI | 179.5° | 180.0° |
| CAJ | CAE | CAH | CAC | 0.1° | 0.0° |
| CAE | CAJ | CAK | OAG | 179.5° | 180.0° |
| CAE | CAJ | CAK | CAD | 0.4° | 0.0° |
| CAE | CAJ | NAF | H4 | 0.5° | 0.1° |
| CAJ | NAF | CAI | H4 | 180.0° | 179.9° |
| CAJ | NAF | CAI | SAA | 179.8° | 180.0° |
| CAJ | NAF | CAI | OAG | 0.2° | 0.1° |
| NAF | CAJ | CAK | OAG | 0.1° | 0.0° |
| NAF | CAJ | CAK | CAD | 179.7° | 180.0° |
| NAF | CAJ | CAE | H3 | 0.4° | 0.1° |
| CAI | NAF | CAJ | CAK | 0.2° | 0.1° |
| NAF | CAI | SAA | OAG | 179.6° | 179.9° |
| NAF | CAI | OAG | CAK | 0.1° | 0.0° |
| CAH | CAC | CAD | H2 | 180.0° | 180.0° |
| CAH | CAC | CAD | CAK | 0.2° | 0.0° |
| CAH | CAC | CAD | H1 | 179.8° | 180.0° |
| CAC | CAH | CAE | H3 | 179.9° | 180.0° |
| CAJ | CAK | OAG | CAI | 0.0° | 0.0° |
| CAJ | CAK | CAD | CAC | 0.1° | 0.0° |
| CAJ | CAK | OAG | CAD | 179.8° | 180.0° |
| CAJ | CAK | CAD | H1 | 179.9° | 180.0° |
| CAK | CAJ | CAE | H3 | 179.6° | 180.0° |
| CAK | CAJ | NAF | H4 | 179.8° | 180.0° |
| SAA | CAI | OAG | CAK | 179.8° | 180.0° |
| SAA | CAI | NAF | H4 | 0.2° | 0.1° |
| CAI | OAG | CAK | CAD | 179.8° | 180.0° |
| OAG | CAI | NAF | H4 | 179.8° | 180.0° |
| CAC | CAD | CAK | OAG | 179.8° | 180.0° |
| CAC | CAD | CAK | H1 | 180.0° | 180.0° |
| OAG | CAK | CAD | H1 | 0.3° | 0.0° |
| CAK | CAD | CAC | H2 | 179.8° | 180.0° |
| H1 | CAD | CAC | H2 | 0.1° | 0.0° |
