Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O31C29doub1.21Å1.26Å
N32C28sing1.47Å1.45Å
O22C21sing1.43Å1.40Å
O22P23sing1.61Å1.64Å
C21C20sing1.53Å1.52Å
O26C27sing1.43Å1.40Å
O26P23sing1.61Å1.64Å
C29C28sing1.51Å1.52Å
C29O30sing1.34Å1.26Å
C28C27sing1.53Å1.52Å
O33C20sing1.45Å1.39Å
O33C34sing1.34Å1.39Å
P23O25doub1.48Å1.50Å
P23O24sing1.61Å1.50Å
C20C19sing1.53Å1.52Å
C34C36sing1.51Å1.52Å
C34O35doub1.21Å1.18Å
C36C37sing1.53Å1.52Å
C19O18sing1.45Å1.39Å
C37C38sing1.53Å1.52Å
O18C16sing1.34Å1.39Å
C38C39sing1.53Å1.52Å
C16O17doub1.21Å1.18Å
C16C15sing1.51Å1.53Å
C15C14sing1.53Å1.52Å
C39C40sing1.53Å1.52Å
C14C13sing1.53Å1.52Å
C40C41sing1.53Å1.51Å
C41C42sing1.53Å1.51Å
C42C43sing1.51Å1.51Å
C43C44doub1.31Å1.31Å
C13H1sing1.09Å1.10Å
C13H2sing1.09Å1.10Å
C13H3sing1.09Å1.10Å
C14H4sing1.09Å1.10Å
C14H5sing1.09Å1.10Å
C15H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C19H8sing1.09Å1.10Å
C19H9sing1.09Å1.10Å
C20H10sing1.09Å1.10Å
C21H11sing1.09Å1.10Å
C21H12sing1.09Å1.10Å
O24H13sing0.97Å0.95Å
C27H14sing1.09Å1.10Å
C27H15sing1.09Å1.10Å
C28H16sing1.09Å1.10Å
O30H17sing0.97Å0.95Å
N32H18sing1.01Å1.00Å
N32H19sing1.01Å1.00Å
C36H21sing1.09Å1.10Å
C36H22sing1.09Å1.10Å
C37H23sing1.09Å1.10Å
C37H24sing1.09Å1.10Å
C38H25sing1.09Å1.10Å
C38H26sing1.09Å1.10Å
C39H27sing1.09Å1.10Å
C39H28sing1.09Å1.10Å
C40H29sing1.09Å1.10Å
C40H30sing1.09Å1.10Å
C41H31sing1.09Å1.10Å
C41H32sing1.09Å1.10Å
C42H33sing1.09Å1.10Å
C42H34sing1.09Å1.10Å
C43H35sing1.08Å1.08Å
C44H36sing1.08Å1.08Å
C44H37sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O31C29C28120.2°120.0°
O31C29O30119.8°120.0°
N32C28C29110.4°109.5°
N32C28C27110.3°109.5°
N32C28H16108.9°109.5°
C28N32H18109.5°111.0°
C28N32H19109.4°111.0°
C21O22P23120.6°123.0°
O22C21C20109.5°109.5°
O22C21H11109.5°109.5°
O22C21H12109.5°109.5°
O22P23O26110.6°109.5°
O22P23O25110.9°109.5°
O22P23O24108.3°109.5°
C21C20O33108.9°109.4°
C21C20C19113.7°109.5°
C21C20H10108.1°109.5°
C20C21H11109.5°109.5°
C20C21H12109.5°109.5°
C27O26P23117.8°123.0°
O26C27C28107.7°109.4°
O26C27H14109.9°109.5°
O26C27H15109.9°109.4°
O26P23O25108.5°109.5°
O26P23O24108.9°109.4°
C28C29O30120.1°120.0°
C29C28C27111.2°109.5°
C29C28H16107.9°109.4°
C29O30H17109.5°117.0°
C28C27H14109.9°109.5°
C28C27H15109.9°109.5°
C27C28H16108.0°109.5°
C20O33C34109.2°117.0°
O33C20C19108.0°109.5°
O33C20H10109.9°109.5°
O33C34C36121.8°120.0°
O33C34O35118.9°120.0°
O25P23O24109.6°109.5°
P23O24H13109.5°114.0°
C20C19O18107.9°109.5°
C20C19H8109.8°109.5°
C20C19H9109.9°109.5°
C19C20H10108.1°109.5°
C36C34O35119.3°120.0°
C34C36C37108.2°109.5°
C34C36H21109.8°109.4°
C34C36H22109.8°109.5°
C36C37C38111.7°109.5°
C37C36H21109.8°109.5°
C37C36H22109.8°109.4°
C36C37H23108.9°109.5°
C36C37H24108.9°109.4°
C19O18C16114.0°117.0°
O18C19H8109.9°109.4°
O18C19H9109.9°109.5°
C37C38C39111.9°109.5°
C38C37H23108.9°109.5°
C38C37H24108.9°109.5°
C37C38H25108.9°109.5°
C37C38H26108.8°109.4°
O18C16O17120.4°120.0°
O18C16C15118.8°120.0°
C38C39C40111.0°109.5°
C39C38H25108.9°109.5°
C39C38H26108.9°109.5°
C38C39H27109.1°109.5°
C38C39H28109.1°109.5°
O17C16C15120.9°120.0°
C16C15C14112.7°109.5°
C16C15H6108.7°109.4°
C16C15H7108.7°109.4°
C15C14C13111.4°109.5°
C15C14H4109.0°109.5°
C15C14H5109.0°109.5°
C14C15H6108.7°109.5°
C14C15H7108.7°109.5°
C39C40C41110.6°109.5°
C40C39H27109.1°109.5°
C40C39H28109.1°109.5°
C39C40H29109.2°109.4°
C39C40H30109.2°109.5°
C14C13H1109.5°109.5°
C14C13H2109.5°109.5°
C14C13H3109.4°109.4°
C13C14H4109.0°109.5°
C13C14H5109.0°109.4°
C40C41C42109.8°109.5°
C41C40H29109.2°109.4°
C41C40H30109.2°109.5°
C40C41H31109.4°109.5°
C40C41H32109.4°109.5°
C41C42C43110.8°109.5°
C42C41H31109.4°109.5°
C42C41H32109.4°109.5°
C41C42H33109.1°109.5°
C41C42H34109.1°109.5°
C42C43C44118.3°120.0°
C43C42H33109.2°109.4°
C43C42H34109.2°109.5°
C42C43H35120.8°120.0°
C44C43H35120.9°120.0°
C43C44H36120.0°120.0°
C43C44H37120.0°120.0°
H1C13H2109.5°109.5°
H1C13H3109.5°109.5°
H2C13H3109.5°109.4°
H4C14H5109.5°109.5°
H6C15H7109.4°109.5°
H8C19H9109.4°109.5°
H11C21H12109.5°109.4°
H14C27H15109.5°109.5°
H18N32H19109.4°111.1°
H21C36H22109.4°109.5°
H23C37H24109.5°109.5°
H25C38H26109.5°109.5°
H27C39H28109.5°109.4°
H29C40H30109.5°109.4°
H31C41H32109.5°109.4°
H33C42H34109.5°109.4°
H36C44H37120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O31C29C28N3212.9°20.1°
O31C29C28O30179.8°179.9°
O31C29C28C27109.9°100.0°
O31C29C28H16131.9°140.0°
O31C29O30H170.0°0.1°
N32C28C27O26103.0°65.0°
N32C28C29C27122.8°120.0°
N32C28C29H16119.0°120.0°
N32C28C29O30167.3°160.0°
N32C28C27H16118.9°120.0°
N32C28C27H1416.7°175.0°
N32C28C27H15137.3°55.0°
C28N32H18H19120.0°124.0°
O22C21C20H11120.0°120.0°
O22C21C20H12120.0°120.0°
C21O22P23O26123.4°175.0°
O22C21C20O33104.1°65.0°
C21O22P23O252.9°55.0°
C21O22P23O24117.3°65.0°
O22C21C20C19135.4°55.0°
O22C21C20H1015.3°175.0°
O22C21H11H12120.0°120.0°
P23O22C21C2078.9°180.0°
O22P23O26C27148.5°175.0°
O22P23O26O25121.9°120.0°
O22P23O26O24118.9°120.0°
O22P23O25O24119.5°120.0°
P23O22C21H11161.1°60.0°
P23O22C21H1241.1°60.0°
O22P23O24H13121.1°59.9°
C21C20O33C19123.9°120.0°
C21C20O33H10118.3°120.0°
C21C20O33C34130.7°150.0°
C21C20C19H10120.1°120.0°
C21C20C19O18144.8°55.0°
C21C20C19H895.5°174.9°
C21C20C19H925.0°65.0°
C20C21H11H12120.0°120.0°
O26C27C28C2919.8°175.0°
O26C27C28H14119.7°120.0°
O26C27C28H15119.7°119.9°
C27O26P23O2589.6°55.0°
C27O26P23O2429.6°65.0°
O26C27H14H15120.8°120.0°
O26C27C28H16138.1°55.0°
P23O26C27C28133.3°180.0°
O26P23O25O24118.8°120.0°
O26P23O24H13118.6°60.1°
P23O26C27H14107.0°60.0°
P23O26C27H1513.6°60.0°
C29C28C27H16118.2°119.9°
C29C28C27H14139.6°54.9°
C29C28C27H1599.9°65.1°
C28C29O30H17179.8°180.0°
C29C28N32H18180.0°60.0°
C29C28N32H1960.0°176.0°
O30C29C28C2769.9°79.9°
O30C29C28H1648.4°40.0°
C28C27H14H15120.8°120.0°
C27C28N32H1856.7°60.0°
C27C28N32H19176.7°64.0°
O33C20C19H10119.0°120.0°
C20O33C34C36153.1°180.0°
C20O33C34O3524.4°0.0°
O33C20C19O1894.3°65.0°
O33C20C19H825.5°55.0°
O33C20C19H9145.9°175.0°
O33C20C21H1115.9°55.0°
O33C20C21H12135.9°175.0°
C34O33C20C19105.4°90.0°
O33C34C36O35177.6°180.0°
O33C34C36C37138.7°180.0°
C34O33C20H1012.4°30.0°
O33C34C36H21101.4°60.0°
O33C34C36H2218.9°60.0°
O25P23O24H130.0°179.9°
C20C19O18H8119.7°120.0°
C20C19O18H9119.8°120.1°
C20C19O18C16145.8°180.0°
C20C19H8H9120.7°120.1°
C19C20C21H11104.6°175.0°
C19C20C21H1215.4°65.0°
C34C36C37H21119.8°120.0°
C34C36C37H22119.8°120.0°
C34C36C37C3866.5°180.0°
C34C36H21H22120.6°120.0°
C34C36C37H2353.8°60.0°
C34C36C37H24173.2°60.0°
O35C34C36C3738.8°0.0°
O35C34C36H2181.0°120.0°
O35C34C36H22158.6°120.0°
C36C37C38H23120.3°120.0°
C36C37C38H24120.3°120.0°
C36C37C38C39128.1°180.0°
C37C36H21H22120.5°120.0°
C36C37H23H24119.0°119.9°
C36C37C38H25111.5°60.0°
C36C37C38H267.8°60.0°
C19O18C16O1788.7°0.1°
C19O18C16C1591.5°180.0°
O18C19H8H9120.7°119.9°
O18C19C20H1024.7°175.0°
C37C38C39H25120.4°120.0°
C37C38C39H26120.3°120.0°
C37C38C39C40134.7°180.0°
C38C37C36H21173.7°60.0°
C38C37C36H2253.3°60.0°
C38C37H23H24119.0°120.0°
C37C38H25H26118.9°120.0°
C37C38C39H27105.1°60.0°
C37C38C39H2814.4°60.0°
O18C16O17C15179.7°180.0°
O18C16C15C1496.0°180.0°
O18C16C15H6143.5°60.0°
O18C16C15H724.5°60.0°
C16O18C19H894.4°60.0°
C16O18C19H926.1°59.9°
C38C39C40H27120.2°120.0°
C38C39C40H28120.2°120.1°
C38C39C40C41179.6°180.0°
C39C38C37H237.8°60.0°
C39C38C37H24111.6°60.0°
C39C38H25H26118.9°120.0°
C38C39H27H28119.3°120.0°
C38C39C40H2959.5°60.0°
C38C39C40H3060.2°59.9°
O17C16C15C1483.7°0.0°
O17C16C15H636.8°120.0°
O17C16C15H7155.8°120.0°
C16C15C14H6120.5°120.0°
C16C15C14H7120.5°120.0°
C16C15C14C13171.4°180.0°
C16C15C14H451.1°60.0°
C16C15C14H568.3°60.0°
C16C15H6H7118.5°120.0°
C15C14C13H4120.3°120.0°
C15C14C13H5120.3°120.0°
C15C14C13H1180.0°60.0°
C15C14C13H260.0°180.0°
C15C14C13H360.0°60.0°
C15C14H4H5119.1°120.0°
C14C15H6H7118.5°120.1°
C39C40C41H29120.2°119.9°
C39C40C41H30120.2°120.1°
C39C40C41C42175.2°180.0°
C40C39C38H2514.3°60.1°
C40C39C38H26105.0°60.0°
C40C39H27H28119.3°120.0°
C39C40H29H30119.5°120.0°
C39C40C41H3164.8°60.0°
C39C40C41H3255.1°59.9°
C14C13H1H2120.0°120.0°
C14C13H1H3120.0°120.0°
C14C13H2H3120.0°119.9°
C13C14H4H5119.1°120.0°
C13C14C15H668.1°60.0°
C13C14C15H750.9°60.1°
C40C41C42H31120.0°120.0°
C40C41C42H32120.1°120.1°
C40C41C42C43133.2°180.0°
C41C40C39H2760.1°60.0°
C41C40C39H2859.4°59.9°
C41C40H29H30119.5°120.0°
C40C41H31H32119.9°120.0°
C40C41C42H33106.6°60.0°
C40C41C42H3413.0°59.9°
C41C42C43H33120.2°120.0°
C41C42C43H34120.2°120.1°
C41C42C43C44148.6°125.0°
C42C41C40H2955.0°60.1°
C42C41C40H3064.7°59.9°
C42C41H31H32119.8°120.0°
C41C42H33H34119.4°120.1°
C41C42C43H3531.4°55.0°
C42C43C44H35180.0°180.0°
C43C42C41H3113.2°60.0°
C43C42C41H32106.7°59.9°
C43C42H33H34119.4°119.9°
C42C43C44H36180.0°180.0°
C42C43C44H370.0°0.0°
C44C43C42H3391.2°5.0°
C44C43C42H3428.4°114.9°
C43C44H36H37180.0°179.9°
H1C13H2H3120.0°120.0°
H1C13C14H459.7°180.0°
H1C13C14H559.7°60.0°
H2C13C14H4179.7°60.0°
H2C13C14H560.3°60.1°
H3C13C14H460.3°60.0°
H3C13C14H5179.7°180.0°
H4C14C15H6171.6°179.9°
H4C14C15H769.4°60.0°
H5C14C15H652.2°59.9°
H5C14C15H7171.2°180.0°
H8C19C20H10144.5°65.1°
H9C19C20H1095.1°55.0°
H10C20C21H11135.3°65.0°
H10C20C21H12104.7°55.0°
H14C27C28H16102.2°65.0°
H15C27C28H1618.4°175.0°
H16C28N32H1861.6°180.0°
H16C28N32H1958.4°56.0°
H21C36C37H2366.0°179.9°
H21C36C37H2453.4°60.0°
H22C36C37H23173.6°60.0°
H22C36C37H2467.0°180.0°
H23C37C38H25128.2°180.0°
H23C37C38H26112.5°60.0°
H24C37C38H258.8°60.0°
H24C37C38H26128.1°180.0°
H25C38C39H27134.5°179.9°
H25C38C39H28105.9°60.0°
H26C38C39H2715.2°60.0°
H26C38C39H28134.8°179.9°
H27C39C40H29179.7°180.0°
H27C39C40H3060.0°60.1°
H28C39C40H2960.8°60.0°
H28C39C40H30179.6°180.0°
H29C40C41H31175.1°179.9°
H29C40C41H3265.0°60.0°
H30C40C41H3155.4°60.1°
H30C40C41H32175.3°180.0°
H31C41C42H33133.4°180.0°
H31C41C42H34107.0°60.0°
H32C41C42H3313.5°60.0°
H32C41C42H34133.0°180.0°
H33C42C43H3588.8°175.0°
H34C42C43H35151.6°65.1°
H35C43C44H360.0°0.1°
H35C43C44H37180.0°180.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon