5UY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C16 | O2 | sing | 1.45Å | 1.45Å | |
O2 | C15 | sing | 1.35Å | 1.34Å | |
C1 | N | doub | 1.32Å | 1.33Å | Aromatic |
C1 | C | sing | 1.40Å | 1.39Å | Aromatic |
C15 | C | sing | 1.47Å | 1.49Å | |
C15 | O1 | doub | 1.22Å | 1.21Å | |
N | C2 | sing | 1.33Å | 1.33Å | Aromatic |
C | C4 | doub | 1.41Å | 1.41Å | Aromatic |
C2 | N3 | sing | 1.39Å | 1.37Å | |
C2 | C3 | doub | 1.39Å | 1.39Å | Aromatic |
C4 | C3 | sing | 1.39Å | 1.39Å | Aromatic |
C4 | N1 | sing | 1.39Å | 1.37Å | |
N3 | C10 | sing | 1.39Å | 1.37Å | |
N1 | C5 | sing | 1.46Å | 1.45Å | |
C10 | C13 | doub | 1.40Å | 1.40Å | Aromatic |
C10 | N4 | sing | 1.33Å | 1.33Å | Aromatic |
C5 | C6 | sing | 1.53Å | 1.51Å | |
C13 | N5 | sing | 1.32Å | 1.34Å | Aromatic |
N4 | C11 | doub | 1.32Å | 1.33Å | Aromatic |
N5 | C12 | doub | 1.33Å | 1.35Å | Aromatic |
C11 | C12 | sing | 1.40Å | 1.39Å | Aromatic |
C12 | C14 | sing | 1.43Å | 1.45Å | |
C6 | O | sing | 1.43Å | 1.43Å | |
C6 | C9 | sing | 1.53Å | 1.52Å | |
O | C7 | sing | 1.43Å | 1.44Å | |
C9 | N2 | sing | 1.47Å | 1.46Å | |
C14 | N6 | trip | 1.14Å | 1.14Å | |
C7 | C8 | sing | 1.53Å | 1.51Å | |
N2 | C8 | sing | 1.47Å | 1.47Å | |
C1 | H1 | sing | 1.08Å | 1.08Å | |
C3 | H2 | sing | 1.08Å | 1.08Å | |
C5 | H3 | sing | 1.09Å | 1.10Å | |
C5 | H4 | sing | 1.09Å | 1.10Å | |
C6 | H5 | sing | 1.09Å | 1.10Å | |
C7 | H6 | sing | 1.09Å | 1.10Å | |
C7 | H7 | sing | 1.09Å | 1.10Å | |
C8 | H8 | sing | 1.09Å | 1.10Å | |
C8 | H9 | sing | 1.09Å | 1.10Å | |
N1 | H10 | sing | 0.97Å | 1.00Å | |
C9 | H11 | sing | 1.09Å | 1.10Å | |
C9 | H12 | sing | 1.09Å | 1.10Å | |
C13 | H13 | sing | 1.08Å | 1.08Å | |
C11 | H14 | sing | 1.08Å | 1.08Å | |
C16 | H15 | sing | 1.09Å | 1.10Å | |
C16 | H16 | sing | 1.09Å | 1.10Å | |
C16 | H17 | sing | 1.09Å | 1.10Å | |
N2 | H18 | sing | 1.01Å | 1.00Å | |
N3 | H20 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C16 | O2 | C15 | 117.0° | 117.0° |
O2 | C16 | H15 | 109.5° | 109.5° |
O2 | C16 | H16 | 109.4° | 109.5° |
O2 | C16 | H17 | 109.4° | 109.5° |
O2 | C15 | C | 111.7° | 120.0° |
O2 | C15 | O1 | 124.2° | 120.0° |
N | C1 | C | 124.3° | 120.7° |
C1 | N | C2 | 117.6° | 122.0° |
N | C1 | H1 | 117.8° | 119.7° |
C1 | C | C15 | 120.8° | 120.5° |
C1 | C | C4 | 117.8° | 118.9° |
C | C1 | H1 | 117.9° | 119.7° |
C | C15 | O1 | 124.1° | 120.0° |
C15 | C | C4 | 121.4° | 120.6° |
N | C2 | N3 | 114.3° | 119.5° |
N | C2 | C3 | 122.9° | 121.0° |
C | C4 | C3 | 117.8° | 118.2° |
C | C4 | N1 | 121.7° | 120.9° |
N3 | C2 | C3 | 122.9° | 119.5° |
C2 | N3 | C10 | 130.5° | 120.0° |
C2 | N3 | H20 | 114.8° | 120.0° |
C2 | C3 | C4 | 119.5° | 119.2° |
C2 | C3 | H2 | 120.3° | 120.4° |
C3 | C4 | N1 | 120.5° | 120.9° |
C4 | C3 | H2 | 120.2° | 120.4° |
C4 | N1 | C5 | 123.4° | 120.0° |
C4 | N1 | H10 | 105.9° | 120.0° |
N3 | C10 | C13 | 119.9° | 120.0° |
N3 | C10 | N4 | 118.8° | 120.0° |
C10 | N3 | H20 | 114.8° | 120.0° |
N1 | C5 | C6 | 116.3° | 109.4° |
N1 | C5 | H3 | 107.7° | 109.4° |
N1 | C5 | H4 | 107.7° | 109.5° |
C5 | N1 | H10 | 105.9° | 120.0° |
C13 | C10 | N4 | 121.3° | 120.0° |
C10 | C13 | N5 | 121.7° | 120.0° |
C10 | C13 | H13 | 119.1° | 120.0° |
C10 | N4 | C11 | 117.2° | 120.1° |
C5 | C6 | O | 103.3° | 109.6° |
C5 | C6 | C9 | 113.5° | 109.5° |
C6 | C5 | H3 | 107.7° | 109.5° |
C6 | C5 | H4 | 107.8° | 109.5° |
C5 | C6 | H5 | 109.7° | 109.5° |
C13 | N5 | C12 | 116.5° | 120.0° |
N5 | C13 | H13 | 119.1° | 120.0° |
N4 | C11 | C12 | 121.8° | 119.9° |
N4 | C11 | H14 | 119.1° | 120.1° |
N5 | C12 | C11 | 121.5° | 120.0° |
N5 | C12 | C14 | 117.3° | 120.0° |
C11 | C12 | C14 | 121.2° | 120.0° |
C12 | C11 | H14 | 119.1° | 120.1° |
C12 | C14 | N6 | 178.5° | 180.0° |
O | C6 | C9 | 109.6° | 109.2° |
C6 | O | C7 | 112.5° | 113.8° |
O | C6 | H5 | 110.9° | 109.5° |
C6 | C9 | N2 | 110.4° | 109.3° |
C9 | C6 | H5 | 109.7° | 109.5° |
C6 | C9 | H11 | 109.2° | 109.5° |
C6 | C9 | H12 | 109.2° | 109.5° |
O | C7 | C8 | 110.7° | 109.3° |
O | C7 | H6 | 109.2° | 109.5° |
O | C7 | H7 | 109.2° | 109.6° |
C9 | N2 | C8 | 112.1° | 110.7° |
N2 | C9 | H11 | 109.3° | 109.5° |
N2 | C9 | H12 | 109.2° | 109.5° |
C9 | N2 | H18 | 108.8° | 111.0° |
C7 | C8 | N2 | 111.1° | 109.3° |
C8 | C7 | H6 | 109.2° | 109.5° |
C8 | C7 | H7 | 109.2° | 109.5° |
C7 | C8 | H8 | 109.1° | 109.5° |
C7 | C8 | H9 | 109.1° | 109.5° |
N2 | C8 | H8 | 109.0° | 109.5° |
N2 | C8 | H9 | 109.0° | 109.5° |
C8 | N2 | H18 | 108.8° | 111.0° |
H3 | C5 | H4 | 109.5° | 109.5° |
H6 | C7 | H7 | 109.4° | 109.5° |
H8 | C8 | H9 | 109.5° | 109.6° |
H11 | C9 | H12 | 109.5° | 109.5° |
H15 | C16 | H16 | 109.5° | 109.4° |
H15 | C16 | H17 | 109.5° | 109.5° |
H16 | C16 | H17 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C16 | O2 | C15 | C | 178.9° | 180.0° |
C16 | O2 | C15 | O1 | 1.3° | 0.1° |
O2 | C16 | H15 | H16 | 120.0° | 120.0° |
O2 | C16 | H15 | H17 | 120.0° | 120.0° |
O2 | C16 | H16 | H17 | 120.0° | 120.0° |
O2 | C15 | C | C1 | 11.5° | 5.8° |
O2 | C15 | C | O1 | 179.7° | 179.9° |
O2 | C15 | C | C4 | 166.6° | 174.2° |
C15 | O2 | C16 | H15 | 180.0° | 59.9° |
C15 | O2 | C16 | H16 | 60.0° | 60.0° |
C15 | O2 | C16 | H17 | 60.0° | 180.0° |
N | C1 | C | H1 | 180.0° | 179.8° |
N | C1 | C | C15 | 178.6° | 180.0° |
N | C1 | C | C4 | 0.4° | 0.0° |
C1 | N | C2 | N3 | 178.8° | 180.0° |
C1 | N | C2 | C3 | 0.7° | 0.0° |
C1 | C | C15 | C4 | 178.1° | 180.0° |
C1 | C | C15 | O1 | 168.7° | 174.3° |
C | C1 | N | C2 | 0.4° | 0.1° |
C1 | C | C4 | C3 | 0.9° | 0.0° |
C1 | C | C4 | N1 | 178.8° | 180.0° |
C15 | C | C4 | C3 | 179.1° | 180.0° |
C15 | C | C4 | N1 | 0.6° | 0.0° |
C15 | C | C1 | H1 | 1.4° | 0.3° |
O1 | C15 | C | C4 | 13.2° | 5.7° |
N | C2 | N3 | C3 | 179.5° | 179.9° |
N | C2 | C3 | C4 | 0.2° | 0.0° |
N | C2 | N3 | C10 | 164.3° | 5.3° |
C2 | N | C1 | H1 | 179.6° | 179.7° |
N | C2 | C3 | H2 | 179.8° | 180.0° |
N | C2 | N3 | H20 | 15.7° | 174.8° |
C | C4 | C3 | C2 | 0.7° | 0.0° |
C | C4 | C3 | N1 | 179.7° | 180.0° |
C | C4 | N1 | C5 | 177.8° | 174.4° |
C4 | C | C1 | H1 | 179.6° | 179.7° |
C | C4 | C3 | H2 | 179.3° | 180.0° |
C | C4 | N1 | H10 | 55.9° | 5.5° |
N3 | C2 | C3 | C4 | 179.3° | 179.9° |
C2 | N3 | C10 | H20 | 180.0° | 179.9° |
C2 | N3 | C10 | C13 | 163.0° | 174.8° |
C2 | N3 | C10 | N4 | 17.0° | 5.3° |
N3 | C2 | C3 | H2 | 0.7° | 0.1° |
C2 | C3 | C4 | H2 | 180.0° | 180.0° |
C2 | C3 | C4 | N1 | 179.1° | 180.0° |
C3 | C2 | N3 | C10 | 15.2° | 174.8° |
C3 | C2 | N3 | H20 | 164.9° | 5.1° |
C3 | C4 | N1 | C5 | 1.9° | 5.6° |
C3 | C4 | N1 | H10 | 123.8° | 174.5° |
C4 | N1 | C5 | H10 | 121.9° | 180.0° |
C4 | N1 | C5 | C6 | 102.1° | 180.0° |
N1 | C4 | C3 | H2 | 0.9° | 0.0° |
C4 | N1 | C5 | H3 | 18.9° | 60.0° |
C4 | N1 | C5 | H4 | 136.9° | 60.0° |
N3 | C10 | C13 | N4 | 180.0° | 179.9° |
N3 | C10 | C13 | N5 | 179.9° | 180.0° |
N3 | C10 | N4 | C11 | 179.9° | 180.0° |
N3 | C10 | C13 | H13 | 0.1° | 0.2° |
N1 | C5 | C6 | H3 | 121.0° | 119.9° |
N1 | C5 | C6 | H4 | 121.0° | 120.0° |
N1 | C5 | C6 | O | 170.4° | 60.0° |
N1 | C5 | C6 | C9 | 71.0° | 179.8° |
N1 | C5 | H3 | H4 | 116.9° | 120.0° |
N1 | C5 | C6 | H5 | 52.1° | 60.1° |
C10 | C13 | N5 | H13 | 180.0° | 179.8° |
C13 | C10 | N4 | C11 | 0.1° | 0.1° |
C10 | C13 | N5 | C12 | 0.0° | 0.2° |
C13 | C10 | N3 | H20 | 17.0° | 5.1° |
N4 | C10 | C13 | N5 | 0.1° | 0.1° |
C10 | N4 | C11 | C12 | 0.0° | 0.2° |
N4 | C10 | C13 | H13 | 179.9° | 179.7° |
C10 | N4 | C11 | H14 | 180.0° | 179.7° |
N4 | C10 | N3 | H20 | 163.1° | 174.8° |
C5 | C6 | O | C9 | 121.3° | 120.0° |
C5 | C6 | O | H5 | 117.5° | 120.1° |
C5 | C6 | C9 | H5 | 123.1° | 120.1° |
C5 | C6 | O | C7 | 179.2° | 178.6° |
C5 | C6 | C9 | N2 | 171.7° | 176.8° |
C6 | C5 | H3 | H4 | 116.9° | 120.1° |
C6 | C5 | N1 | H10 | 136.0° | 0.0° |
C5 | C6 | C9 | H11 | 68.2° | 63.3° |
C5 | C6 | C9 | H12 | 51.6° | 56.8° |
C13 | N5 | C12 | C11 | 0.1° | 0.5° |
C13 | N5 | C12 | C14 | 179.3° | 179.5° |
N4 | C11 | C12 | N5 | 0.0° | 0.5° |
N4 | C11 | C12 | H14 | 180.0° | 179.6° |
N4 | C11 | C12 | C14 | 179.3° | 179.5° |
N5 | C12 | C11 | C14 | 179.3° | 180.0° |
N5 | C12 | C14 | N6 | 167.0° | 136.7° |
C12 | N5 | C13 | H13 | 180.0° | 180.0° |
N5 | C12 | C11 | H14 | 180.0° | 179.9° |
C11 | C12 | C14 | N6 | 12.4° | 43.3° |
C14 | C12 | C11 | H14 | 0.7° | 0.1° |
O | C6 | C9 | H5 | 122.0° | 119.9° |
O | C6 | C9 | N2 | 56.8° | 56.8° |
C6 | O | C7 | C8 | 58.1° | 58.7° |
O | C6 | C5 | H3 | 68.6° | 59.9° |
O | C6 | C5 | H4 | 49.4° | 180.0° |
C6 | O | C7 | H6 | 178.3° | 61.3° |
C6 | O | C7 | H7 | 62.1° | 178.6° |
O | C6 | C9 | H11 | 176.9° | 176.7° |
O | C6 | C9 | H12 | 63.3° | 63.1° |
C9 | C6 | O | C7 | 59.5° | 58.6° |
C6 | C9 | N2 | H11 | 120.1° | 119.9° |
C6 | C9 | N2 | H12 | 120.1° | 120.0° |
C6 | C9 | N2 | C8 | 54.3° | 58.6° |
C9 | C6 | C5 | H3 | 50.0° | 59.8° |
C9 | C6 | C5 | H4 | 168.0° | 60.2° |
C6 | C9 | H11 | H12 | 119.6° | 120.1° |
C6 | C9 | N2 | H18 | 66.1° | 65.2° |
O | C7 | C8 | H6 | 120.2° | 119.9° |
O | C7 | C8 | H7 | 120.2° | 120.0° |
O | C7 | C8 | N2 | 53.3° | 56.8° |
C7 | O | C6 | H5 | 61.7° | 61.3° |
O | C7 | H6 | H7 | 119.4° | 120.2° |
O | C7 | C8 | H8 | 66.9° | 63.1° |
O | C7 | C8 | H9 | 173.6° | 176.8° |
C9 | N2 | C8 | C7 | 52.7° | 58.6° |
C9 | N2 | C8 | H18 | 120.4° | 123.8° |
N2 | C9 | C6 | H5 | 65.2° | 63.1° |
C9 | N2 | C8 | H8 | 67.6° | 61.3° |
C9 | N2 | C8 | H9 | 172.9° | 178.6° |
N2 | C9 | H11 | H12 | 119.6° | 120.1° |
C7 | C8 | N2 | H8 | 120.3° | 119.9° |
C7 | C8 | N2 | H9 | 120.2° | 120.0° |
C8 | C7 | H6 | H7 | 119.4° | 120.1° |
C7 | C8 | H8 | H9 | 119.3° | 120.1° |
C7 | C8 | N2 | H18 | 67.7° | 65.2° |
N2 | C8 | C7 | H6 | 173.5° | 63.1° |
N2 | C8 | C7 | H7 | 66.9° | 176.8° |
N2 | C8 | H8 | H9 | 119.2° | 120.1° |
C8 | N2 | C9 | H11 | 174.4° | 178.5° |
C8 | N2 | C9 | H12 | 65.8° | 61.4° |
H3 | C5 | C6 | H5 | 173.0° | 179.9° |
H3 | C5 | N1 | H10 | 103.0° | 120.0° |
H4 | C5 | C6 | H5 | 68.9° | 59.9° |
H4 | C5 | N1 | H10 | 15.0° | 120.0° |
H5 | C6 | C9 | H11 | 54.9° | 56.8° |
H5 | C6 | C9 | H12 | 174.7° | 176.9° |
H6 | C7 | C8 | H8 | 53.3° | 177.0° |
H6 | C7 | C8 | H9 | 66.2° | 56.9° |
H7 | C7 | C8 | H8 | 172.9° | 56.9° |
H7 | C7 | C8 | H9 | 53.4° | 63.2° |
H8 | C8 | N2 | H18 | 172.0° | 174.9° |
H9 | C8 | N2 | H18 | 52.5° | 54.8° |
H11 | C9 | N2 | H18 | 54.0° | 54.7° |
H12 | C9 | N2 | H18 | 173.8° | 174.9° |
H15 | C16 | H16 | H17 | 120.0° | 120.0° |