5UD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| F5 | C5 | sing | 1.35Å | 1.35Å | |
| C5 | C4 | sing | 1.42Å | 1.48Å | |
| C5 | C6 | doub | 1.35Å | 1.42Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C4 | N3 | sing | 1.35Å | 1.33Å | |
| N3 | C2 | sing | 1.35Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N1 | sing | 1.34Å | 1.41Å | |
| C6 | N1 | sing | 1.37Å | 1.36Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| N1 | C1' | sing | 1.46Å | 1.50Å | |
| C1' | C2' | sing | 1.55Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.51Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| F5 | C5 | C4 | 113.5° | 120.5° |
| F5 | C5 | C6 | 126.7° | 120.4° |
| C4 | C5 | C6 | 119.7° | 119.1° |
| C5 | C4 | O4 | 122.9° | 120.3° |
| C5 | C4 | N3 | 115.7° | 119.4° |
| C5 | C6 | N1 | 121.5° | 119.6° |
| C5 | C6 | H6 | 121.5° | 120.2° |
| O4 | C4 | N3 | 121.4° | 120.3° |
| C4 | N3 | C2 | 122.9° | 120.3° |
| C4 | N3 | HN3 | 117.7° | 119.8° |
| C2 | N3 | HN3 | 119.4° | 119.9° |
| N3 | C2 | O2 | 114.7° | 119.5° |
| N3 | C2 | N1 | 124.6° | 120.9° |
| O2 | C2 | N1 | 120.7° | 119.5° |
| C2 | N1 | C6 | 115.6° | 120.6° |
| C2 | N1 | C1' | 124.1° | 119.7° |
| N1 | C6 | H6 | 117.0° | 120.2° |
| C6 | N1 | C1' | 120.3° | 119.7° |
| N1 | C1' | C2' | 130.4° | 110.8° |
| N1 | C1' | O4' | 120.2° | 110.6° |
| N1 | C1' | H1' | 76.9° | 110.5° |
| C2' | C1' | O4' | 97.4° | 103.5° |
| C2' | C1' | H1' | 109.7° | 110.6° |
| C1' | C2' | O2' | 121.0° | 110.9° |
| C1' | C2' | C3' | 105.6° | 102.1° |
| C1' | C2' | H2' | 109.2° | 110.8° |
| O4' | C1' | H1' | 123.7° | 110.6° |
| C1' | O4' | C4' | 114.2° | 106.9° |
| O2' | C2' | C3' | 120.0° | 110.9° |
| O2' | C2' | H2' | 88.7° | 110.8° |
| C2' | O2' | HO2' | 121.0° | 106.8° |
| C3' | C2' | H2' | 110.6° | 111.0° |
| C2' | C3' | O3' | 124.5° | 110.5° |
| C2' | C3' | C4' | 107.2° | 104.1° |
| C2' | C3' | H3' | 98.2° | 110.4° |
| O3' | C3' | C4' | 100.0° | 110.8° |
| O3' | C3' | H3' | 105.6° | 110.4° |
| C3' | O3' | HO3' | 124.5° | 106.8° |
| C4' | C3' | H3' | 123.4° | 110.5° |
| C3' | C4' | O4' | 99.8° | 107.5° |
| C3' | C4' | C5' | 113.2° | 109.9° |
| C3' | C4' | H4' | 112.6° | 110.0° |
| O4' | C4' | C5' | 106.9° | 109.9° |
| O4' | C4' | H4' | 118.3° | 109.8° |
| C5' | C4' | H4' | 106.1° | 109.8° |
| C4' | C5' | O5' | 120.2° | 109.5° |
| C4' | C5' | H5'1 | 108.3° | 109.4° |
| C4' | C5' | H5'2 | 108.3° | 109.5° |
| O5' | C5' | H5'1 | 108.4° | 109.4° |
| O5' | C5' | H5'2 | 108.4° | 109.5° |
| C5' | O5' | HO5' | 120.2° | 106.8° |
| H5'1 | C5' | H5'2 | 101.6° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| F5 | C5 | C4 | C6 | 179.5° | 180.0° |
| F5 | C5 | C4 | O4 | 0.1° | 0.0° |
| F5 | C5 | C4 | N3 | 179.9° | 180.0° |
| F5 | C5 | C6 | N1 | 179.3° | 180.0° |
| F5 | C5 | C6 | H6 | 0.7° | 0.1° |
| C5 | C4 | O4 | N3 | 179.9° | 179.9° |
| C5 | C4 | N3 | C2 | 0.2° | 0.2° |
| C5 | C4 | N3 | HN3 | 179.8° | 180.0° |
| C4 | C5 | C6 | N1 | 0.2° | 0.0° |
| C4 | C5 | C6 | H6 | 179.8° | 179.9° |
| C6 | C5 | C4 | O4 | 179.7° | 180.0° |
| C6 | C5 | C4 | N3 | 0.4° | 0.0° |
| C5 | C6 | N1 | C2 | 0.8° | 0.3° |
| C5 | C6 | N1 | H6 | 180.0° | 179.9° |
| C5 | C6 | N1 | C1' | 178.5° | 180.0° |
| O4 | C4 | N3 | C2 | 179.8° | 179.7° |
| O4 | C4 | N3 | HN3 | 0.2° | 0.1° |
| C4 | N3 | C2 | HN3 | 180.0° | 179.8° |
| C4 | N3 | C2 | O2 | 179.7° | 180.0° |
| C4 | N3 | C2 | N1 | 0.5° | 0.5° |
| N3 | C2 | O2 | N1 | 179.2° | 179.5° |
| N3 | C2 | N1 | C6 | 1.0° | 0.5° |
| N3 | C2 | N1 | C1' | 178.6° | 179.7° |
| HN3 | N3 | C2 | O2 | 0.3° | 0.2° |
| HN3 | N3 | C2 | N1 | 179.5° | 179.7° |
| O2 | C2 | N1 | C6 | 179.8° | 180.0° |
| O2 | C2 | N1 | C1' | 2.3° | 0.3° |
| C2 | N1 | C6 | C1' | 177.6° | 179.7° |
| C2 | N1 | C6 | H6 | 179.1° | 179.8° |
| C2 | N1 | C1' | C2' | 6.7° | 55.9° |
| C2 | N1 | C1' | O4' | 140.4° | 58.3° |
| C2 | N1 | C1' | H1' | 98.1° | 178.8° |
| C6 | N1 | C1' | C2' | 175.9° | 124.4° |
| C6 | N1 | C1' | O4' | 42.2° | 121.4° |
| C6 | N1 | C1' | H1' | 79.3° | 1.5° |
| H6 | C6 | N1 | C1' | 1.5° | 0.1° |
| N1 | C1' | C2' | O4' | 141.0° | 118.6° |
| N1 | C1' | C2' | H1' | 89.2° | 122.9° |
| N1 | C1' | O4' | H1' | 94.1° | 122.9° |
| N1 | C1' | C2' | O2' | 106.1° | 86.2° |
| N1 | C1' | C2' | C3' | 113.2° | 155.7° |
| N1 | C1' | C2' | H2' | 5.7° | 37.4° |
| N1 | C1' | O4' | C4' | 104.2° | 158.7° |
| C2' | C1' | O4' | H1' | 119.6° | 118.5° |
| C1' | C2' | O2' | C3' | 135.1° | 112.7° |
| C1' | C2' | O2' | H2' | 111.7° | 123.6° |
| C1' | C2' | C3' | H2' | 118.0° | 118.2° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 124.4° | 98.0° |
| C1' | C2' | C3' | C4' | 8.7° | 21.0° |
| C1' | C2' | C3' | H3' | 120.2° | 139.5° |
| C2' | C1' | O4' | C4' | 42.0° | 40.0° |
| O4' | C1' | C2' | O2' | 112.9° | 155.3° |
| O4' | C1' | C2' | C3' | 27.7° | 37.1° |
| O4' | C1' | C2' | H2' | 146.7° | 81.2° |
| C1' | O4' | C4' | C3' | 37.2° | 26.4° |
| C1' | O4' | C4' | C5' | 80.8° | 146.0° |
| C1' | O4' | C4' | H4' | 159.6° | 93.2° |
| H1' | C1' | C2' | O2' | 16.9° | 36.7° |
| H1' | C1' | C2' | C3' | 157.5° | 81.4° |
| H1' | C1' | C2' | H2' | 83.5° | 160.3° |
| H1' | C1' | O4' | C4' | 161.6° | 78.4° |
| O2' | C2' | C3' | H2' | 100.9° | 123.6° |
| O2' | C2' | C3' | O3' | 16.7° | 20.2° |
| O2' | C2' | C3' | C4' | 132.4° | 139.2° |
| O2' | C2' | C3' | H3' | 98.7° | 102.3° |
| C3' | C2' | O2' | HO2' | 44.9° | 67.3° |
| C2' | C3' | O3' | C4' | 119.1° | 114.8° |
| C2' | C3' | O3' | H3' | 111.8° | 122.5° |
| C2' | C3' | C4' | H3' | 112.5° | 118.5° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | O4' | 14.5° | 1.9° |
| C2' | C3' | C4' | C5' | 98.8° | 121.4° |
| C2' | C3' | C4' | H4' | 140.9° | 117.6° |
| H2' | C2' | O2' | HO2' | 68.3° | 56.4° |
| H2' | C2' | C3' | O3' | 117.6° | 143.8° |
| H2' | C2' | C3' | C4' | 126.7° | 97.2° |
| H2' | C2' | C3' | H3' | 2.2° | 21.4° |
| O3' | C3' | C4' | H3' | 116.3° | 122.7° |
| O3' | C3' | C4' | O4' | 116.6° | 120.7° |
| O3' | C3' | C4' | C5' | 130.1° | 119.8° |
| O3' | C3' | C4' | H4' | 9.8° | 1.2° |
| C4' | C3' | O3' | HO3' | 60.9° | 65.2° |
| C3' | C4' | O4' | C5' | 118.0° | 119.5° |
| C3' | C4' | O4' | H4' | 122.4° | 119.6° |
| C3' | C4' | C5' | H4' | 123.9° | 121.1° |
| C3' | C4' | C5' | O5' | 153.9° | 179.7° |
| C3' | C4' | C5' | H5'1 | 80.8° | 59.7° |
| C3' | C4' | C5' | H5'2 | 28.6° | 60.3° |
| H3' | C3' | O3' | HO3' | 68.1° | 57.5° |
| H3' | C3' | C4' | O4' | 127.0° | 116.6° |
| H3' | C3' | C4' | C5' | 13.7° | 2.9° |
| H3' | C3' | C4' | H4' | 106.6° | 123.9° |
| O4' | C4' | C5' | H4' | 127.2° | 120.9° |
| O4' | C4' | C5' | O5' | 45.0° | 61.6° |
| O4' | C4' | C5' | H5'1 | 170.3° | 58.3° |
| O4' | C4' | C5' | H5'2 | 80.2° | 178.3° |
| C4' | C5' | O5' | H5'1 | 125.3° | 119.9° |
| C4' | C5' | O5' | H5'2 | 125.2° | 120.0° |
| C4' | C5' | H5'1 | H5'2 | 114.0° | 120.0° |
| C4' | C5' | O5' | HO5' | 180.0° | 180.0° |
| H4' | C4' | C5' | O5' | 82.2° | 59.2° |
| H4' | C4' | C5' | H5'1 | 43.1° | 179.2° |
| H4' | C4' | C5' | H5'2 | 152.6° | 60.8° |
| O5' | C5' | H5'1 | H5'2 | 114.0° | 120.0° |
| H5'1 | C5' | O5' | HO5' | 54.8° | 60.1° |
| H5'2 | C5' | O5' | HO5' | 54.7° | 60.0° |
