5UA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | C6' | sing | 1.35Å | 1.26Å | |
| OP3 | C6' | doub | 1.21Å | 1.25Å | |
| O5' | C5' | sing | 1.45Å | 1.44Å | |
| O5' | C6' | sing | 1.35Å | 1.47Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.32Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.37Å | Aromatic |
| N7 | C5 | sing | 1.36Å | 1.35Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.48Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.37Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C6 | N1 | sing | 1.33Å | 1.33Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.46Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.46Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.35Å | Aromatic |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| OP1 | HP1 | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N6 | H61N | sing | 0.97Å | 1.00Å | |
| N6 | H62N | sing | 0.97Å | 1.00Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | C6' | OP3 | 121.2° | 120.0° |
| OP1 | C6' | O5' | 121.3° | 120.0° |
| C6' | OP1 | HP1 | 109.5° | 117.0° |
| OP3 | C6' | O5' | 117.5° | 120.0° |
| C5' | O5' | C6' | 123.6° | 117.0° |
| O5' | C5' | C4' | 114.5° | 109.5° |
| O5' | C5' | H5'1 | 107.8° | 109.5° |
| O5' | C5' | H5'2 | 106.7° | 109.5° |
| C5' | C4' | O4' | 111.1° | 110.6° |
| C5' | C4' | C3' | 112.5° | 110.7° |
| C4' | C5' | H5'1 | 107.8° | 109.5° |
| C4' | C5' | H5'2 | 106.7° | 109.5° |
| C5' | C4' | H4' | 105.4° | 110.6° |
| O4' | C4' | C3' | 106.7° | 103.5° |
| C4' | O4' | C1' | 108.6° | 107.0° |
| O4' | C4' | H4' | 111.3° | 110.6° |
| C4' | C3' | C2' | 104.3° | 102.1° |
| C4' | C3' | O3' | 107.3° | 110.9° |
| C3' | C4' | H4' | 109.9° | 110.8° |
| C4' | C3' | H3' | 113.9° | 110.9° |
| O4' | C1' | N9 | 111.2° | 109.8° |
| O4' | C1' | C2' | 104.6° | 107.3° |
| O4' | C1' | H1' | 112.1° | 109.9° |
| N9 | C1' | C2' | 110.9° | 109.9° |
| C1' | N9 | C8 | 128.0° | 126.3° |
| C1' | N9 | C4 | 127.2° | 126.3° |
| N9 | C1' | H1' | 105.9° | 109.8° |
| C1' | C2' | C3' | 101.4° | 104.2° |
| C2' | C1' | H1' | 112.3° | 110.0° |
| C1' | C2' | H2'1 | 112.3° | 110.5° |
| C1' | C2' | H2'2 | 113.9° | 110.5° |
| C8 | N9 | C4 | 104.8° | 107.4° |
| N9 | C8 | N7 | 110.3° | 110.0° |
| N9 | C8 | H8 | 124.9° | 125.0° |
| N9 | C4 | C5 | 112.3° | 106.0° |
| N9 | C4 | N3 | 125.3° | 134.9° |
| C8 | N7 | C5 | 107.0° | 109.5° |
| N7 | C8 | H8 | 124.8° | 125.0° |
| N7 | C5 | C6 | 134.6° | 134.7° |
| N7 | C5 | C4 | 105.6° | 107.1° |
| C6 | C5 | C4 | 119.7° | 118.2° |
| C5 | C6 | N6 | 121.3° | 120.8° |
| C5 | C6 | N1 | 117.7° | 118.5° |
| C5 | C4 | N3 | 122.4° | 119.1° |
| N6 | C6 | N1 | 121.0° | 120.8° |
| C6 | N6 | H61N | 109.5° | 120.0° |
| C6 | N6 | H62N | 109.5° | 120.0° |
| C6 | N1 | C2 | 124.0° | 121.2° |
| N1 | C2 | N3 | 115.1° | 122.4° |
| N1 | C2 | H2 | 122.5° | 118.8° |
| C2 | N3 | C4 | 121.1° | 120.6° |
| N3 | C2 | H2 | 122.5° | 118.7° |
| C2' | C3' | O3' | 108.9° | 110.9° |
| C2' | C3' | H3' | 112.4° | 110.9° |
| C3' | C2' | H2'1 | 112.2° | 110.5° |
| C3' | C2' | H2'2 | 114.0° | 110.5° |
| O3' | C3' | H3' | 109.7° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H5'1 | C5' | H5'2 | 113.5° | 109.4° |
| H2'1 | C2' | H2'2 | 103.4° | 110.5° |
| H61N | N6 | H62N | 109.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | C6' | OP3 | O5' | 179.9° | 180.0° |
| OP1 | C6' | O5' | C5' | 54.6° | 180.0° |
| OP3 | C6' | O5' | C5' | 125.5° | 0.0° |
| OP3 | C6' | OP1 | HP1 | 0.0° | 0.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 117.8° | 120.0° |
| O5' | C5' | C4' | O4' | 59.4° | 66.5° |
| O5' | C5' | C4' | C3' | 60.2° | 179.5° |
| O5' | C5' | H5'1 | H5'2 | 118.0° | 120.0° |
| O5' | C5' | C4' | H4' | 179.9° | 56.4° |
| C6' | O5' | C5' | C4' | 112.7° | 180.0° |
| O5' | C6' | OP1 | HP1 | 179.9° | 180.0° |
| C6' | O5' | C5' | H5'1 | 7.3° | 60.0° |
| C6' | O5' | C5' | H5'2 | 129.5° | 60.0° |
| C5' | C4' | O4' | C3' | 122.9° | 118.5° |
| C5' | C4' | O4' | H4' | 117.1° | 122.8° |
| C5' | C4' | C3' | H4' | 117.1° | 123.0° |
| C5' | C4' | O4' | C1' | 133.5° | 158.6° |
| C5' | C4' | C3' | C2' | 108.3° | 155.5° |
| C5' | C4' | C3' | O3' | 136.3° | 86.3° |
| C4' | C5' | H5'1 | H5'2 | 118.0° | 120.0° |
| C5' | C4' | C3' | H3' | 14.6° | 37.3° |
| O4' | C4' | C3' | H4' | 120.8° | 118.5° |
| C4' | O4' | C1' | N9 | 150.6° | 146.0° |
| C4' | O4' | C1' | C2' | 30.8° | 26.5° |
| O4' | C4' | C3' | C2' | 13.8° | 37.0° |
| O4' | C4' | C3' | O3' | 101.6° | 155.2° |
| O4' | C4' | C5' | H5'1 | 179.4° | 53.5° |
| O4' | C4' | C5' | H5'2 | 58.4° | 173.5° |
| O4' | C4' | C3' | H3' | 136.7° | 81.2° |
| C4' | O4' | C1' | H1' | 91.2° | 93.1° |
| C3' | C4' | O4' | C1' | 10.6° | 40.1° |
| C4' | C3' | C2' | C1' | 30.9° | 20.9° |
| C4' | C3' | C2' | O3' | 114.3° | 118.2° |
| C4' | C3' | C2' | H3' | 123.9° | 118.2° |
| C4' | C3' | O3' | H3' | 124.2° | 123.7° |
| C3' | C4' | C5' | H5'1 | 59.8° | 60.5° |
| C3' | C4' | C5' | H5'2 | 178.0° | 59.4° |
| C4' | C3' | C2' | H2'1 | 151.0° | 97.8° |
| C4' | C3' | C2' | H2'2 | 91.9° | 139.6° |
| C4' | C3' | O3' | HO3' | 137.2° | 180.0° |
| O4' | C1' | N9 | C2' | 115.9° | 117.8° |
| O4' | C1' | N9 | H1' | 122.0° | 121.0° |
| O4' | C1' | C2' | H1' | 121.8° | 119.6° |
| O4' | C1' | N9 | C8 | 115.0° | 23.6° |
| O4' | C1' | N9 | C4 | 64.7° | 156.8° |
| O4' | C1' | C2' | C3' | 38.0° | 2.1° |
| C1' | O4' | C4' | H4' | 109.3° | 78.6° |
| O4' | C1' | C2' | H2'1 | 157.9° | 120.7° |
| O4' | C1' | C2' | H2'2 | 84.9° | 116.6° |
| N9 | C1' | C2' | H1' | 118.3° | 121.0° |
| C1' | N9 | C8 | C4 | 179.8° | 179.7° |
| C1' | N9 | C8 | N7 | 179.8° | 179.9° |
| C1' | N9 | C4 | C5 | 179.7° | 179.9° |
| C1' | N9 | C4 | N3 | 0.2° | 0.7° |
| N9 | C1' | C2' | C3' | 157.9° | 121.4° |
| N9 | C1' | C2' | H2'1 | 82.1° | 119.9° |
| N9 | C1' | C2' | H2'2 | 35.0° | 2.8° |
| C1' | N9 | C8 | H8 | 0.2° | 0.0° |
| C2' | C1' | N9 | C8 | 129.1° | 94.3° |
| C2' | C1' | N9 | C4 | 51.2° | 85.4° |
| C1' | C2' | C3' | H2'1 | 120.0° | 118.7° |
| C1' | C2' | C3' | H2'2 | 122.9° | 118.7° |
| C1' | C2' | C3' | O3' | 83.4° | 139.1° |
| C1' | C2' | C3' | H3' | 154.8° | 97.3° |
| C1' | C2' | H2'1 | H2'2 | 123.3° | 122.6° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.0° | 0.1° |
| C8 | N9 | C4 | C5 | 0.1° | 0.3° |
| C8 | N9 | C4 | N3 | 180.0° | 179.5° |
| C8 | N9 | C1' | H1' | 7.0° | 144.6° |
| C4 | N9 | C8 | N7 | 0.0° | 0.2° |
| N9 | C4 | C5 | N7 | 0.1° | 0.4° |
| N9 | C4 | C5 | C6 | 179.9° | 179.8° |
| N9 | C4 | C5 | N3 | 179.9° | 179.3° |
| N9 | C4 | N3 | C2 | 179.9° | 179.6° |
| C4 | N9 | C1' | H1' | 173.3° | 35.7° |
| C4 | N9 | C8 | H8 | 180.0° | 179.7° |
| C8 | N7 | C5 | C6 | 179.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.1° | 0.3° |
| N7 | C5 | C6 | C4 | 179.9° | 179.7° |
| N7 | C5 | C6 | N6 | 0.1° | 0.0° |
| N7 | C5 | C6 | N1 | 179.9° | 180.0° |
| N7 | C5 | C4 | N3 | 180.0° | 179.7° |
| C5 | N7 | C8 | H8 | 180.0° | 180.0° |
| C5 | C6 | N6 | N1 | 180.0° | 180.0° |
| C5 | C6 | N1 | C2 | 0.1° | 0.1° |
| C6 | C5 | C4 | N3 | 0.0° | 0.5° |
| C5 | C6 | N6 | H61N | 26.8° | 0.0° |
| C5 | C6 | N6 | H62N | 146.8° | 180.0° |
| C4 | C5 | C6 | N6 | 180.0° | 179.7° |
| C4 | C5 | C6 | N1 | 0.0° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.5° |
| N6 | C6 | N1 | C2 | 179.9° | 179.9° |
| C6 | N6 | H61N | H62N | 120.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| N1 | C6 | N6 | H61N | 153.2° | 180.0° |
| N1 | C6 | N6 | H62N | 33.2° | 0.0° |
| C6 | N1 | C2 | H2 | 179.9° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 179.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.3° |
| C4 | N3 | C2 | H2 | 179.9° | 179.8° |
| C2' | C3' | O3' | H3' | 123.4° | 123.6° |
| C2' | C3' | C4' | H4' | 134.6° | 81.5° |
| C3' | C2' | C1' | H1' | 83.8° | 117.5° |
| C3' | C2' | H2'1 | H2'2 | 123.3° | 122.6° |
| C2' | C3' | O3' | HO3' | 110.4° | 67.3° |
| O3' | C3' | C4' | H4' | 19.2° | 36.7° |
| O3' | C3' | C2' | H2'1 | 36.6° | 20.4° |
| O3' | C3' | C2' | H2'2 | 153.8° | 102.2° |
| H5'1 | C5' | C4' | H4' | 59.9° | 176.4° |
| H5'2 | C5' | C4' | H4' | 62.3° | 63.6° |
| H4' | C4' | C3' | H3' | 102.5° | 160.3° |
| H3' | C3' | C2' | H2'1 | 85.1° | 144.0° |
| H3' | C3' | C2' | H2'2 | 32.0° | 21.4° |
| H3' | C3' | O3' | HO3' | 13.0° | 56.3° |
| H1' | C1' | C2' | H2'1 | 36.2° | 1.2° |
| H1' | C1' | C2' | H2'2 | 153.3° | 123.8° |
