5SY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OB	CF	doub	1.22Å	1.30Å
C	O1	sing	1.43Å	1.43Å
O1	C1	sing	1.43Å	1.44Å
CF	OA	sing	1.34Å	1.37Å
CF	CB	sing	1.41Å	1.42Å
OA	CE	sing	1.35Å	1.39Å
O2	CAC	sing	1.34Å	1.45Å
O2	C2	sing	1.45Å	1.47Å
CAM	CAC	sing	1.51Å	1.41Å
CA	CB	sing	1.51Å	1.51Å
CA	O3	sing	1.43Å	1.40Å
CB	CC	doub	1.36Å	1.35Å
CE	CJ	doub	1.39Å	1.41Å	Aromatic
CE	CD	sing	1.41Å	1.39Å	Aromatic
CJ	CI	sing	1.38Å	1.41Å	Aromatic
CAC	OAC	doub	1.21Å	1.46Å
C3	O3	sing	1.43Å	1.41Å
C3	C2	sing	1.53Å	1.50Å
C3	C4	sing	1.53Å	1.52Å
CC	CD	sing	1.47Å	1.45Å
C1	C2	sing	1.53Å	1.50Å
C1	O5	sing	1.43Å	1.42Å
CD	CG	doub	1.40Å	1.39Å	Aromatic
CI	CH	doub	1.39Å	1.40Å	Aromatic
C5	C4	sing	1.53Å	1.51Å
C5	O5	sing	1.43Å	1.46Å
C5	C6	sing	1.53Å	1.53Å
C4	O4	sing	1.43Å	1.44Å
CG	CH	sing	1.37Å	1.40Å	Aromatic
O6	C6	sing	1.43Å	1.42Å
C4	H1	sing	1.09Å	1.10Å
C5	H2	sing	1.09Å	1.10Å
C6	H3	sing	1.09Å	1.10Å
C6	H4	sing	1.09Å	1.10Å
O6	H5	sing	0.97Å	0.95Å
O4	H6	sing	0.97Å	0.95Å
C3	H7	sing	1.09Å	1.10Å
C2	H8	sing	1.09Å	1.10Å
C1	H9	sing	1.09Å	1.10Å
C	H10	sing	1.09Å	1.10Å
C	H11	sing	1.09Å	1.10Å
C	H12	sing	1.09Å	1.10Å
CAM	H13	sing	1.09Å	1.10Å
CAM	H14	sing	1.09Å	1.10Å
CAM	H15	sing	1.09Å	1.10Å
CA	H16	sing	1.09Å	1.10Å
CA	H17	sing	1.09Å	1.10Å
CC	H18	sing	1.08Å	1.08Å
CG	H19	sing	1.08Å	1.08Å
CH	H20	sing	1.08Å	1.08Å
CI	H21	sing	1.08Å	1.08Å
CJ	H22	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OB	CF	OA	123.6°	119.2°
OB	CF	CB	116.7°	119.2°
C	O1	C1	112.7°	114.0°
O1	C	H10	109.5°	109.5°
O1	C	H11	109.5°	109.5°
O1	C	H12	109.5°	109.5°
O1	C1	C2	107.3°	109.5°
O1	C1	O5	106.5°	109.4°
O1	C1	H9	111.1°	109.5°
OA	CF	CB	119.7°	121.7°
CF	OA	CE	121.5°	121.5°
CF	CB	CA	115.7°	120.1°
CF	CB	CC	120.3°	119.8°
OA	CE	CJ	120.4°	120.8°
OA	CE	CD	119.5°	119.9°
CAC	O2	C2	115.3°	117.0°
O2	CAC	CAM	128.7°	120.0°
O2	CAC	OAC	120.6°	120.0°
O2	C2	C3	106.0°	109.6°
O2	C2	C1	109.4°	109.6°
O2	C2	H8	109.6°	109.5°
CAM	CAC	OAC	110.7°	120.0°
CAC	CAM	H13	109.5°	109.4°
CAC	CAM	H14	109.5°	109.5°
CAC	CAM	H15	109.5°	109.5°
CB	CA	O3	109.1°	109.5°
CA	CB	CC	124.0°	120.1°
CB	CA	H16	109.6°	109.5°
CB	CA	H17	109.5°	109.5°
CA	O3	C3	114.9°	114.0°
O3	CA	H16	109.6°	109.5°
O3	CA	H17	109.6°	109.5°
CB	CC	CD	120.1°	118.2°
CB	CC	H18	120.0°	120.9°
CJ	CE	CD	120.2°	119.3°
CE	CJ	CI	119.3°	119.8°
CE	CJ	H22	120.4°	120.1°
CE	CD	CC	118.9°	119.0°
CE	CD	CG	120.6°	119.9°
CJ	CI	CH	120.3°	120.7°
CJ	CI	H21	119.8°	119.7°
CI	CJ	H22	120.4°	120.1°
O3	C3	C2	105.7°	109.5°
O3	C3	C4	110.6°	109.6°
O3	C3	H7	111.1°	109.6°
C2	C3	C4	110.1°	109.1°
C3	C2	C1	113.6°	109.1°
C2	C3	H7	109.8°	109.5°
C3	C2	H8	109.1°	109.5°
C3	C4	C5	107.6°	109.2°
C3	C4	O4	110.4°	109.5°
C3	C4	H1	108.7°	109.5°
C4	C3	H7	109.4°	109.6°
CC	CD	CG	120.4°	121.1°
CD	CC	H18	119.9°	120.9°
C2	C1	O5	109.9°	109.4°
C1	C2	H8	109.1°	109.5°
C2	C1	H9	110.3°	109.5°
C1	O5	C5	114.1°	114.1°
O5	C1	H9	111.5°	109.5°
CD	CG	CH	120.0°	119.7°
CD	CG	H19	120.0°	120.1°
CI	CH	CG	119.6°	120.5°
CI	CH	H20	120.2°	119.7°
CH	CI	H21	119.9°	119.7°
C4	C5	O5	110.9°	109.4°
C4	C5	C6	111.0°	109.5°
C5	C4	O4	111.5°	109.5°
C5	C4	H1	108.8°	109.5°
C4	C5	H2	109.3°	109.5°
O5	C5	C6	106.2°	109.5°
O5	C5	H2	110.2°	109.5°
C5	C6	O6	110.6°	109.5°
C6	C5	H2	109.2°	109.5°
C5	C6	H3	109.2°	109.4°
C5	C6	H4	109.2°	109.5°
O4	C4	H1	109.8°	109.5°
C4	O4	H6	109.5°	114.0°
CH	CG	H19	120.0°	120.1°
CG	CH	H20	120.2°	119.8°
O6	C6	H3	109.2°	109.5°
O6	C6	H4	109.2°	109.4°
C6	O6	H5	109.5°	114.0°
H3	C6	H4	109.5°	109.5°
H10	C	H11	109.5°	109.5°
H10	C	H12	109.5°	109.4°
H11	C	H12	109.4°	109.4°
H13	CAM	H14	109.5°	109.5°
H13	CAM	H15	109.4°	109.4°
H14	CAM	H15	109.5°	109.5°
H16	CA	H17	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OB	CF	OA	CB	180.0°	179.5°
OB	CF	OA	CE	179.7°	180.0°
OB	CF	CB	CA	0.4°	0.3°
OB	CF	CB	CC	179.8°	180.0°
C	O1	C1	C2	171.0°	170.0°
C	O1	C1	O5	53.3°	70.1°
C	O1	C1	H9	68.3°	50.0°
O1	C	H10	H11	120.0°	120.0°
O1	C	H10	H12	120.0°	120.0°
O1	C	H11	H12	120.0°	120.0°
O1	C1	C2	O2	55.1°	57.6°
O1	C1	C2	C3	63.2°	62.4°
O1	C1	C2	O5	115.5°	119.9°
O1	C1	C2	H9	121.2°	120.1°
O1	C1	O5	H9	121.4°	120.1°
O1	C1	O5	C5	60.8°	58.8°
O1	C1	C2	H8	174.9°	177.7°
C1	O1	C	H10	180.0°	180.0°
C1	O1	C	H11	60.0°	60.0°
C1	O1	C	H12	60.0°	60.0°
OA	CF	CB	CA	179.6°	179.8°
OA	CF	CB	CC	0.3°	0.5°
CF	OA	CE	CJ	179.9°	179.8°
CF	OA	CE	CD	0.2°	0.2°
CB	CF	OA	CE	0.3°	0.5°
CF	CB	CA	CC	179.8°	179.7°
CF	CB	CA	O3	175.9°	179.7°
CF	CB	CC	CD	0.2°	0.3°
CF	CB	CA	H16	64.2°	59.7°
CF	CB	CA	H17	55.9°	60.3°
CF	CB	CC	H18	179.8°	179.8°
OA	CE	CJ	CD	179.8°	180.0°
OA	CE	CJ	CI	179.8°	180.0°
OA	CE	CD	CC	0.1°	0.0°
OA	CE	CD	CG	179.7°	180.0°
OA	CE	CJ	H22	0.2°	0.0°
O2	CAC	CAM	OAC	179.3°	180.0°
CAC	O2	C2	C3	122.6°	150.0°
CAC	O2	C2	C1	114.6°	90.3°
CAC	O2	C2	H8	4.9°	29.8°
O2	CAC	CAM	H13	179.3°	90.0°
O2	CAC	CAM	H14	59.3°	150.0°
O2	CAC	CAM	H15	60.7°	30.0°
C2	O2	CAC	CAM	148.9°	179.9°
C2	O2	CAC	OAC	31.8°	0.1°
O2	C2	C3	O3	66.3°	63.2°
O2	C2	C3	C1	120.1°	120.0°
O2	C2	C3	H8	117.9°	120.1°
O2	C2	C3	C4	174.1°	176.9°
O2	C2	C1	H8	119.8°	120.1°
O2	C2	C1	O5	170.5°	177.5°
O2	C2	C3	H7	53.6°	57.0°
O2	C2	C1	H9	66.1°	62.5°
CAC	CAM	H13	H14	120.0°	120.0°
CAC	CAM	H13	H15	120.0°	120.0°
CAC	CAM	H14	H15	120.0°	120.0°
CB	CA	O3	H16	120.0°	120.0°
CB	CA	O3	H17	119.9°	120.0°
CB	CA	O3	C3	164.2°	180.0°
CA	CB	CC	CD	179.6°	180.0°
CB	CA	H16	H17	120.1°	120.0°
CA	CB	CC	H18	0.4°	0.1°
O3	CA	CB	CC	3.9°	0.0°
CA	O3	C3	C2	152.2°	150.0°
CA	O3	C3	C4	88.6°	90.4°
CA	O3	C3	H7	33.1°	29.8°
O3	CA	H16	H17	120.1°	120.0°
CB	CC	CD	CE	0.1°	0.0°
CB	CC	CD	H18	180.0°	179.9°
CB	CC	CD	CG	179.7°	180.0°
CC	CB	CA	H16	116.0°	120.0°
CC	CB	CA	H17	123.9°	120.0°
CE	CJ	CI	H22	180.0°	180.0°
CJ	CE	CD	CC	180.0°	179.9°
CJ	CE	CD	CG	0.2°	0.0°
CE	CJ	CI	CH	0.0°	0.0°
CE	CJ	CI	H21	180.0°	180.0°
CD	CE	CJ	CI	0.0°	0.1°
CE	CD	CC	CG	179.8°	180.0°
CE	CD	CG	CH	0.3°	0.0°
CE	CD	CC	H18	179.9°	179.9°
CE	CD	CG	H19	179.7°	179.9°
CD	CE	CJ	H22	180.0°	179.9°
CJ	CI	CH	H21	180.0°	180.0°
CJ	CI	CH	CG	0.2°	0.0°
CJ	CI	CH	H20	179.8°	180.0°
OAC	CAC	CAM	H13	0.0°	90.0°
OAC	CAC	CAM	H14	120.0°	30.0°
OAC	CAC	CAM	H15	120.0°	150.0°
O3	C3	C2	C4	119.5°	119.9°
O3	C3	C2	H7	119.9°	120.2°
O3	C3	C4	H7	122.8°	120.3°
O3	C3	C2	C1	173.6°	176.8°
O3	C3	C4	C5	171.8°	176.9°
O3	C3	C4	O4	49.9°	56.9°
O3	C3	C4	H1	70.6°	63.2°
O3	C3	C2	H8	51.6°	57.0°
C3	O3	CA	H16	44.2°	60.0°
C3	O3	CA	H17	75.9°	60.0°
C2	C3	C4	H7	120.7°	119.9°
C3	C2	C1	H8	121.9°	119.9°
C3	C2	C1	O5	52.3°	57.5°
C2	C3	C4	C5	55.3°	57.0°
C2	C3	C4	O4	66.6°	62.9°
C2	C3	C4	H1	172.9°	177.0°
C3	C2	C1	H9	175.7°	177.6°
C4	C3	C2	C1	54.0°	56.9°
C3	C4	C5	O4	121.2°	119.9°
C3	C4	C5	H1	117.6°	120.0°
C3	C4	C5	O5	58.1°	57.6°
C3	C4	C5	C6	175.9°	177.6°
C3	C4	O4	H1	119.8°	120.1°
C3	C4	C5	H2	63.6°	62.3°
C3	C4	O4	H6	180.0°	179.9°
C4	C3	C2	H8	67.9°	63.0°
CC	CD	CG	CH	179.9°	180.0°
CC	CD	CG	H19	0.1°	0.0°
C2	C1	O5	H9	122.7°	120.0°
C2	C1	O5	C5	55.1°	61.1°
C1	C2	C3	H7	66.5°	63.0°
C1	O5	C5	C4	60.3°	61.2°
C1	O5	C5	C6	179.0°	178.9°
C1	O5	C5	H2	60.9°	58.8°
O5	C1	C2	H8	69.6°	62.3°
CD	CG	CH	CI	0.4°	0.0°
CD	CG	CH	H19	180.0°	180.0°
CG	CD	CC	H18	0.3°	0.0°
CD	CG	CH	H20	179.6°	180.0°
CI	CH	CG	H20	180.0°	180.0°
CI	CH	CG	H19	179.7°	179.9°
CH	CI	CJ	H22	180.0°	180.0°
C4	C5	O5	C6	120.7°	120.0°
C4	C5	O5	H2	121.2°	120.0°
C4	C5	C6	H2	120.6°	120.1°
C5	C4	O4	H1	120.7°	120.1°
C4	C5	C6	O6	180.0°	175.0°
C4	C5	C6	H3	59.8°	55.0°
C4	C5	C6	H4	59.8°	65.0°
C5	C4	O4	H6	60.5°	60.1°
C5	C4	C3	H7	65.5°	62.9°
O5	C5	C6	H2	118.8°	120.0°
O5	C5	C4	O4	63.0°	62.3°
O5	C5	C6	O6	59.4°	65.1°
O5	C5	C4	H1	175.7°	177.6°
O5	C5	C6	H3	179.5°	175.0°
O5	C5	C6	H4	60.8°	54.9°
C5	O5	C1	H9	177.8°	178.9°
C6	C5	C4	O4	54.8°	57.7°
C5	C6	O6	H3	120.1°	120.0°
C5	C6	O6	H4	120.2°	120.0°
C6	C5	C4	H1	66.5°	62.5°
C5	C6	H3	H4	119.5°	120.1°
C5	C6	O6	H5	180.0°	180.0°
O4	C4	C5	H2	175.3°	177.7°
O4	C4	C3	H7	172.6°	177.2°
CG	CH	CI	H21	179.8°	179.9°
O6	C6	C5	H2	59.4°	55.0°
O6	C6	H3	H4	119.5°	120.0°
H1	C4	C5	H2	54.0°	57.6°
H1	C4	O4	H6	60.2°	60.0°
H1	C4	C3	H7	52.2°	57.1°
H2	C5	C6	H3	60.8°	65.0°
H2	C5	C6	H4	179.6°	174.9°
H3	C6	O6	H5	59.8°	60.0°
H4	C6	O6	H5	59.8°	60.0°
H7	C3	C2	H8	171.5°	177.2°
H8	C2	C1	H9	53.7°	57.7°
H10	C	H11	H12	120.0°	119.9°
H13	CAM	H14	H15	120.0°	120.0°
H19	CG	CH	H20	0.3°	0.0°
H20	CH	CI	H21	0.2°	0.0°
H21	CI	CJ	H22	0.0°	0.0°

Release date:	2016-10-05
Definition date:	2015-11-25
Last modified:	2016-09-30
Release status:	REL
Processing site:	RCSB
Derived from:	5EXO