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5SP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C2sing1.43Å1.40Å
C2C3sing1.51Å1.51Å
C3O4doub1.21Å1.21Å
C3C5sing1.51Å1.52Å
C5C6sing1.53Å1.53Å
C5O13sing1.43Å1.39Å
C6C7sing1.53Å1.51Å
C6O14sing1.43Å1.38Å
C7O8sing1.43Å1.41Å
O8P9sing1.61Å1.58Å
P9O10doub1.48Å1.52Å
P9O11sing1.61Å1.56Å
P9O12sing1.61Å1.58Å
O1HO1sing0.97Å0.95Å
C2H2sing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
O11HO11sing0.97Å0.95Å
O12HO12sing0.97Å0.95Å
O13HO13sing0.97Å0.95Å
O14HO14sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C2C3117.8°109.5°
C2O1HO1109.5°114.0°
O1C2H2106.8°109.4°
O1C2H2A106.8°109.5°
C2C3O4119.5°120.0°
C2C3C5120.9°120.0°
C3C2H2106.8°109.4°
C3C2H2A106.8°109.5°
O4C3C5119.3°120.0°
C3C5C6114.4°109.5°
C3C5O13114.3°109.5°
C3C5H5105.0°109.5°
C6C5O13116.4°109.5°
C5C6C7111.5°109.5°
C5C6O14116.4°109.5°
C6C5H5102.1°109.5°
C5C6H6104.6°109.5°
O13C5H5102.2°109.4°
C5O13HO13109.5°114.0°
C7C6O14114.0°109.4°
C6C7O8116.2°109.5°
C7C6H6107.5°109.5°
C6C7H7107.3°109.4°
C6C7H7A107.3°109.5°
O14C6H6101.4°109.5°
C6O14HO14109.5°114.0°
C7O8P9118.4°123.0°
O8C7H7107.3°109.5°
O8C7H7A107.3°109.5°
O8P9O10105.7°109.5°
O8P9O11110.6°109.5°
O8P9O12109.7°109.5°
O10P9O11108.5°109.5°
O10P9O12112.2°109.5°
O11P9O12110.1°109.5°
P9O11HO11109.5°114.0°
P9O12HO12109.5°114.0°
H2C2H2A112.0°109.5°
H7C7H7A111.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C2C3H2120.0°119.9°
O1C2C3H2A120.0°120.1°
O1C2C3O47.2°0.0°
O1C2C3C5178.7°180.0°
O1C2H2H2A116.6°120.0°
C2C3O4C5174.2°180.0°
C2C3C5C641.5°75.0°
C2C3C5O1396.3°165.0°
C3C2O1HO13.3°180.0°
C3C2H2H2A116.6°120.0°
C2C3C5H5152.6°45.0°
O4C3C5C6132.7°105.0°
O4C3C5O1389.6°15.0°
O4C3C2H2127.2°120.0°
O4C3C2H2A112.8°120.0°
O4C3C5H521.6°135.0°
C3C5C6O13136.9°120.0°
C3C5C6H5112.8°120.0°
C3C5O13H5112.8°120.0°
C3C5C6C7117.9°175.0°
C3C5C6O14108.9°55.0°
C5C3C2H258.7°60.0°
C5C3C2H2A61.4°59.9°
C3C5C6H62.0°65.0°
C3C5O13HO13180.0°60.0°
C6C5O13H5110.3°120.0°
C5C6C7O14134.4°120.0°
C5C6C7H6114.1°120.0°
C5C6O14H6112.7°120.0°
C5C6C7O87.3°175.0°
C5C6C7H7112.7°55.0°
C5C6C7H7A127.3°65.0°
C6C5O13HO1343.1°60.0°
C5C6O14HO14180.0°59.9°
O13C5C6C7105.3°55.0°
O13C5C6O1427.9°65.0°
O13C5C6H6138.8°175.0°
C7C6O14H6115.2°120.0°
C6C7O8H7120.0°120.0°
C6C7O8H7A120.0°120.0°
C6C7O8P9134.4°180.0°
C7C6C5H55.1°65.0°
C6C7H7H7A117.2°120.0°
C7C6O14HO1447.9°60.1°
O14C6C7O8141.7°65.0°
O14C6C5H5138.3°175.0°
O14C6C7H721.7°175.0°
O14C6C7H7A98.3°55.0°
C7O8P9O1024.4°55.0°
C7O8P9O1192.8°65.0°
C7O8P9O12145.5°175.0°
O8C7C6H6106.8°55.0°
O8C7H7H7A117.3°120.0°
O8P9O10O11118.7°120.0°
O8P9O10O12119.5°120.0°
O8P9O11O12121.5°120.0°
P9O8C7H714.4°60.0°
P9O8C7H7A105.6°60.0°
O8P9O11HO11115.5°60.0°
O8P9O12HO12117.1°180.0°
O10P9O11O12123.1°120.0°
O10P9O11HO110.0°180.0°
O10P9O12HO120.0°60.0°
O11P9O12HO12120.9°60.0°
O12P9O11HO11123.1°60.0°
HO1O1C2H2123.2°60.1°
HO1O1C2H2A116.7°59.9°
H5C5C6H6110.8°55.0°
H5C5O13HO1367.1°180.0°
H6C6C7H7133.2°65.0°
H6C6C7H7A13.3°175.0°
H6C6O14HO1467.3°179.9°

222415

PDB entries from 2024-07-10

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