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SummaryGeometryRelated PDB entries

5SK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NAINAJsing1.29Å1.21ÅAromatic
NAICAMdoub1.31Å1.33ÅAromatic
NAJCAQdoub1.32Å1.34ÅAromatic
CAACAHsing1.53Å1.53Å
CARCAHsing1.53Å1.53Å
CARNALsing1.47Å1.50Å
CARCACsing1.53Å1.54Å
CAMCABsing1.51Å1.53Å
CAMNASsing1.35Å1.34ÅAromatic
NALCANsing1.38Å1.35Å
CAQCANsing1.46Å1.34ÅAromatic
CAQNASsing1.37Å1.33ÅAromatic
CANNAKdoub1.31Å1.34ÅAromatic
NASCAPsing1.39Å1.35ÅAromatic
NAKCAOsing1.36Å1.34ÅAromatic
CAPCAOdoub1.41Å1.39ÅAromatic
CAPCAGsing1.39Å1.40ÅAromatic
CAOCAFsing1.40Å1.39ÅAromatic
CAGCAEdoub1.38Å1.39ÅAromatic
CAFCADdoub1.38Å1.39ÅAromatic
CAECADsing1.39Å1.39ÅAromatic
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
CAHH4sing1.09Å1.10Å
CAHH5sing1.09Å1.10Å
CARH6sing1.09Å1.10Å
CACH7sing1.09Å1.10Å
CACH8sing1.09Å1.10Å
CACH9sing1.09Å1.10Å
NALH10sing0.97Å1.00Å
CAFH11sing1.08Å1.08Å
CADH12sing1.08Å1.08Å
CAEH13sing1.08Å1.08Å
CAGH14sing1.08Å1.08Å
CABH15sing1.09Å1.10Å
CABH16sing1.09Å1.10Å
CABH17sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NAJNAICAM108.4°110.1°
NAINAJCAQ110.7°109.4°
NAICAMCAB121.4°126.2°
NAICAMNAS109.2°107.5°
NAJCAQCAN132.0°134.1°
NAJCAQNAS108.0°106.9°
CAACAHCAR110.6°109.5°
CAHCAAH1109.5°109.5°
CAHCAAH2109.5°109.4°
CAHCAAH3109.5°109.5°
CAACAHH4109.2°109.5°
CAACAHH5109.2°109.5°
CAHCARNAL108.8°109.5°
CAHCARCAC107.5°109.5°
CARCAHH4109.2°109.5°
CARCAHH5109.2°109.4°
CAHCARH6107.9°109.5°
NALCARCAC116.3°109.5°
CARNALCAN128.8°120.0°
NALCARH6108.2°109.5°
CARNALH10104.4°120.0°
CACCARH6107.8°109.5°
CARCACH7109.5°109.4°
CARCACH8109.4°109.5°
CARCACH9109.5°109.4°
CABCAMNAS129.3°126.3°
CAMCABH15109.5°109.5°
CAMCABH16109.4°109.5°
CAMCABH17109.5°109.5°
CAMNASCAQ103.7°106.2°
CAMNASCAP134.3°134.6°
NALCANCAQ115.8°120.1°
NALCANNAK124.3°120.0°
CANNALH10104.4°120.0°
CANCAQNAS120.0°119.1°
CAQCANNAK119.9°119.9°
CAQNASCAP122.1°119.2°
CANNAKCAO121.0°121.3°
NASCAPCAO117.4°119.7°
NASCAPCAG124.5°120.5°
NAKCAOCAP119.6°120.8°
NAKCAOCAF119.1°119.8°
CAOCAPCAG118.1°119.7°
CAPCAOCAF121.3°119.4°
CAPCAGCAE121.0°120.1°
CAPCAGH14119.5°119.9°
CAOCAFCAD119.9°120.0°
CAOCAFH11120.0°120.1°
CAGCAECAD120.3°120.4°
CAGCAEH13119.9°119.8°
CAECAGH14119.5°120.0°
CAFCADCAE119.4°120.4°
CADCAFH11120.0°120.0°
CAFCADH12120.3°119.8°
CAECADH12120.3°119.8°
CADCAEH13119.8°119.7°
H1CAAH2109.5°109.5°
H1CAAH3109.4°109.5°
H2CAAH3109.4°109.4°
H4CAHH5109.5°109.5°
H7CACH8109.5°109.5°
H7CACH9109.5°109.5°
H8CACH9109.5°109.5°
H15CABH16109.5°109.4°
H15CABH17109.4°109.4°
H16CABH17109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NAJNAICAMCAB179.9°180.0°
NAJNAICAMNAS0.3°0.6°
NAINAJCAQCAN179.6°180.0°
NAINAJCAQNAS0.4°0.3°
CAMNAINAJCAQ0.4°0.6°
NAICAMCABNAS179.8°179.3°
NAICAMNASCAQ0.1°0.4°
NAICAMNASCAP179.6°179.3°
NAICAMCABH150.0°96.7°
NAICAMCABH16120.0°143.4°
NAICAMCABH17120.0°23.3°
NAJCAQNASCAM0.2°0.1°
NAJCAQCANNAL1.1°0.1°
NAJCAQCANNAS179.1°179.7°
NAJCAQCANNAK179.4°179.8°
NAJCAQNASCAP179.9°179.7°
CAACAHCARH4120.2°120.0°
CAACAHCARH5120.2°120.0°
CAACAHCARNAL177.7°65.0°
CAACAHCARCAC55.6°175.0°
CAHCAAH1H2120.0°120.0°
CAHCAAH1H3120.0°120.0°
CAHCAAH2H3120.0°119.9°
CAACAHH4H5119.5°120.0°
CAACAHCARH660.5°55.0°
CAHCARNALCAC121.5°120.0°
CAHCARNALH6117.0°120.0°
CAHCARCACH6116.1°120.0°
CAHCARNALCAN134.2°155.0°
CARCAHCAAH1180.0°60.0°
CARCAHCAAH260.0°60.0°
CARCAHCAAH360.0°179.9°
CARCAHH4H5119.5°120.0°
CAHCARCACH7180.0°60.0°
CAHCARCACH860.0°180.0°
CAHCARCACH960.0°60.0°
CAHCARNALH1011.7°25.0°
NALCARCACH6121.7°120.0°
CARNALCANH10122.5°180.0°
CARNALCANCAQ145.6°179.7°
CARNALCANNAK36.1°0.0°
NALCARCAHH462.1°175.0°
NALCARCAHH557.5°55.0°
NALCARCACH757.8°60.0°
NALCARCACH8177.8°60.0°
NALCARCACH962.3°180.0°
CACCARNALCAN12.7°85.0°
CACCARCAHH464.6°55.0°
CACCARCAHH5175.7°65.0°
CARCACH7H8120.0°120.0°
CARCACH7H9120.0°120.0°
CARCACH8H9120.0°120.0°
CACCARNALH10109.8°95.0°
CABCAMNASCAQ179.9°179.8°
CABCAMNASCAP0.3°0.1°
CAMCABH15H16120.0°120.0°
CAMCABH15H17120.0°120.0°
CAMCABH16H17120.0°120.1°
CAMNASCAQCAN179.5°179.7°
CAMNASCAQCAP179.7°179.7°
CAMNASCAPCAO179.9°179.9°
CAMNASCAPCAG0.3°0.1°
NASCAMCABH15179.8°84.0°
NASCAMCABH1660.2°35.9°
NASCAMCABH1759.8°156.0°
NALCANCAQNAK178.4°179.7°
NALCANCAQNAS179.8°179.7°
NALCANNAKCAO179.8°179.9°
CANNALCARH6108.8°35.0°
CANCAQNASCAP0.8°0.6°
CAQCANNAKCAO1.6°0.2°
CAQCANNALH1091.9°0.3°
NASCAQCANNAK1.4°0.6°
CAQNASCAPCAO0.3°0.3°
CAQNASCAPCAG179.9°179.7°
CANNAKCAOCAP1.1°0.1°
CANNAKCAOCAF179.2°180.0°
NAKCANNALH1086.4°180.0°
NASCAPCAONAK0.4°0.1°
NASCAPCAOCAG179.8°180.0°
NASCAPCAOCAF179.9°180.0°
NASCAPCAGCAE179.9°180.0°
NASCAPCAGH140.1°0.0°
NAKCAOCAPCAF179.7°179.9°
NAKCAOCAPCAG179.7°179.9°
NAKCAOCAFCAD179.7°180.0°
NAKCAOCAFH110.3°0.0°
CAOCAPCAGCAE0.1°0.0°
CAPCAOCAFCAD0.0°0.0°
CAPCAOCAFH11180.0°180.0°
CAOCAPCAGH14179.9°180.0°
CAGCAPCAOCAF0.0°0.0°
CAPCAGCAEH14180.0°179.9°
CAPCAGCAECAD0.2°0.1°
CAPCAGCAEH13179.8°179.9°
CAOCAFCADH11180.0°180.0°
CAOCAFCADCAE0.1°0.1°
CAOCAFCADH12179.9°180.0°
CAGCAECADCAF0.2°0.1°
CAGCAECADH13180.0°180.0°
CAGCAECADH12179.9°180.0°
CAFCADCAEH12180.0°179.9°
CAFCADCAEH13179.9°179.9°
CAECADCAFH11179.9°179.9°
CADCAECAGH14179.9°180.0°
H1CAAH2H3120.0°120.1°
H1CAACAHH459.8°60.0°
H1CAACAHH559.8°179.9°
H2CAACAHH460.2°180.0°
H2CAACAHH5179.8°60.0°
H3CAACAHH4179.8°60.1°
H3CAACAHH560.2°60.0°
H4CAHCARH6179.3°65.0°
H5CAHCARH659.7°175.0°
H6CARCACH763.9°180.0°
H6CARCACH856.1°60.0°
H6CARCACH9176.1°60.0°
H6CARNALH10128.7°145.0°
H7CACH8H9120.0°120.1°
H11CAFCADH120.0°0.0°
H12CADCAEH130.1°0.0°
H13CAECAGH140.1°0.0°
H15CABH16H17119.9°119.9°

248636

PDB entries from 2026-02-04

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