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Summary Geometry Related PDB entries

5SG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OAA	CAI	sing	1.36Å	1.35Å
CAI	CAD	doub	1.37Å	1.38Å	Aromatic
CAI	CAK	sing	1.41Å	1.39Å	Aromatic
CAD	CAB	sing	1.39Å	1.39Å	Aromatic
CAF	CAK	doub	1.41Å	1.39Å	Aromatic
CAF	CAC	sing	1.36Å	1.39Å	Aromatic
CAK	CAJ	sing	1.42Å	1.39Å	Aromatic
CAC	NAH	doub	1.33Å	1.40Å	Aromatic
CAB	CAE	doub	1.36Å	1.39Å	Aromatic
CAJ	CAE	sing	1.40Å	1.39Å	Aromatic
CAJ	CAG	doub	1.40Å	1.39Å	Aromatic
NAH	CAG	sing	1.31Å	1.40Å	Aromatic
CAD	H1	sing	1.08Å	1.08Å
CAB	H2	sing	1.08Å	1.08Å
CAE	H3	sing	1.08Å	1.08Å
CAG	H4	sing	1.08Å	1.08Å
CAC	H5	sing	1.08Å	1.08Å
CAF	H6	sing	1.08Å	1.08Å
OAA	H7	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OAA	CAI	CAD	121.2°	120.3°
OAA	CAI	CAK	117.5°	120.3°
CAI	OAA	H7	109.5°	114.0°
CAD	CAI	CAK	121.3°	119.4°
CAI	CAD	CAB	118.8°	120.9°
CAI	CAD	H1	120.6°	119.5°
CAI	CAK	CAF	120.7°	122.2°
CAI	CAK	CAJ	119.2°	119.5°
CAD	CAB	CAE	120.8°	121.2°
CAB	CAD	H1	120.6°	119.6°
CAD	CAB	H2	119.6°	119.4°
CAK	CAF	CAC	119.7°	118.7°
CAF	CAK	CAJ	120.1°	118.2°
CAK	CAF	H6	120.2°	120.7°
CAF	CAC	NAH	120.4°	121.8°
CAF	CAC	H5	119.8°	119.0°
CAC	CAF	H6	120.1°	120.7°
CAK	CAJ	CAE	119.9°	119.3°
CAK	CAJ	CAG	120.7°	118.6°
CAC	NAH	CAG	119.6°	122.8°
NAH	CAC	H5	119.8°	119.2°
CAB	CAE	CAJ	119.9°	119.6°
CAE	CAB	H2	119.6°	119.4°
CAB	CAE	H3	120.0°	120.2°
CAE	CAJ	CAG	119.4°	122.1°
CAJ	CAE	H3	120.0°	120.2°
CAJ	CAG	NAH	119.6°	119.9°
CAJ	CAG	H4	120.2°	120.1°
NAH	CAG	H4	120.2°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OAA	CAI	CAD	CAK	179.7°	179.5°
OAA	CAI	CAD	CAB	179.8°	180.0°
OAA	CAI	CAK	CAF	0.3°	0.3°
OAA	CAI	CAK	CAJ	179.8°	180.0°
OAA	CAI	CAD	H1	0.2°	0.2°
CAI	CAD	CAB	H1	180.0°	179.8°
CAD	CAI	CAK	CAF	180.0°	179.8°
CAD	CAI	CAK	CAJ	0.0°	0.4°
CAI	CAD	CAB	CAE	0.0°	0.2°
CAI	CAD	CAB	H2	179.9°	179.8°
CAD	CAI	OAA	H7	180.0°	90.1°
CAK	CAI	CAD	CAB	0.1°	0.4°
CAI	CAK	CAF	CAJ	180.0°	179.7°
CAI	CAK	CAF	CAC	179.8°	179.8°
CAI	CAK	CAJ	CAE	0.0°	0.2°
CAI	CAK	CAJ	CAG	179.9°	179.7°
CAK	CAI	CAD	H1	180.0°	179.7°
CAI	CAK	CAF	H6	0.2°	0.3°
CAK	CAI	OAA	H7	0.3°	89.5°
CAD	CAB	CAE	H2	180.0°	179.9°
CAD	CAB	CAE	CAJ	0.0°	0.0°
CAD	CAB	CAE	H3	180.0°	180.0°
CAK	CAF	CAC	H6	180.0°	179.9°
CAK	CAF	CAC	NAH	0.2°	0.1°
CAF	CAK	CAJ	CAE	180.0°	179.9°
CAF	CAK	CAJ	CAG	0.1°	0.0°
CAK	CAF	CAC	H5	179.8°	180.0°
CAC	CAF	CAK	CAJ	0.2°	0.1°
CAF	CAC	NAH	H5	180.0°	179.9°
CAF	CAC	NAH	CAG	0.2°	0.1°
CAK	CAJ	CAE	CAB	0.0°	0.0°
CAK	CAJ	CAE	CAG	179.9°	179.9°
CAK	CAJ	CAG	NAH	0.1°	0.0°
CAK	CAJ	CAE	H3	180.0°	180.0°
CAK	CAJ	CAG	H4	179.9°	179.9°
CAJ	CAK	CAF	H6	179.8°	179.9°
CAC	NAH	CAG	CAJ	0.1°	0.0°
CAC	NAH	CAG	H4	179.9°	179.9°
NAH	CAC	CAF	H6	179.8°	180.0°
CAB	CAE	CAJ	H3	180.0°	180.0°
CAB	CAE	CAJ	CAG	179.9°	180.0°
CAE	CAB	CAD	H1	180.0°	180.0°
CAE	CAJ	CAG	NAH	179.9°	180.0°
CAJ	CAE	CAB	H2	180.0°	180.0°
CAE	CAJ	CAG	H4	0.1°	0.1°
CAJ	CAG	NAH	H4	180.0°	179.9°
CAG	CAJ	CAE	H3	0.1°	0.1°
CAG	NAH	CAC	H5	179.8°	180.0°
H1	CAD	CAB	H2	0.0°	0.1°
H2	CAB	CAE	H3	0.0°	0.0°
H5	CAC	CAF	H6	0.2°	0.1°

222624

PDB entries from 2024-07-17

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