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SummaryGeometryRelated PDB entries

5SB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OABCANdoub1.21Å1.23Å
CANCAAsing1.51Å1.53Å
CANNALsing1.35Å1.35Å
CAECAFdoub1.39Å1.39ÅAromatic
CAECAPsing1.38Å1.39ÅAromatic
CAFCAQsing1.38Å1.39ÅAromatic
CAHNAJsing1.35Å1.33ÅAromatic
CAHCAOdoub1.37Å1.33ÅAromatic
NALCAPsing1.40Å1.34Å
CAPCASdoub1.41Å1.39ÅAromatic
NAJNAMsing1.40Å1.23ÅAromatic
CAQCAOsing1.48Å1.35Å
CAQCARdoub1.41Å1.40ÅAromatic
CAOCAIsing1.41Å1.33ÅAromatic
CASCARsing1.42Å1.40ÅAromatic
CASNAKsing1.34Å1.34ÅAromatic
NAMCAIdoub1.31Å1.34ÅAromatic
CARCAGsing1.41Å1.39ÅAromatic
NAKCADdoub1.31Å1.40ÅAromatic
CAGCACdoub1.37Å1.39ÅAromatic
CADCACsing1.39Å1.39ÅAromatic
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
NALH4sing0.97Å1.00Å
CAEH5sing1.08Å1.08Å
CAFH6sing1.08Å1.08Å
CADH7sing1.08Å1.08Å
CACH8sing1.08Å1.08Å
CAGH9sing1.08Å1.08Å
CAHH10sing1.08Å1.08Å
NAJH11sing0.97Å1.00Å
CAIH12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OABCANCAA119.4°120.0°
OABCANNAL127.0°120.0°
CAACANNAL113.5°120.0°
CANCAAH1109.5°109.5°
CANCAAH2109.5°109.5°
CANCAAH3109.5°109.5°
CANNALCAP124.6°120.0°
CANNALH4117.7°120.0°
CAFCAECAP119.4°121.0°
CAECAFCAQ121.8°120.7°
CAFCAEH5120.3°119.5°
CAECAFH6119.1°119.7°
CAECAPNAL126.3°120.0°
CAECAPCAS119.4°119.9°
CAPCAEH5120.3°119.5°
CAFCAQCAO117.9°120.3°
CAFCAQCAR118.4°119.5°
CAQCAFH6119.1°119.6°
NAJCAHCAO106.7°107.6°
CAHNAJNAM109.7°108.3°
NAJCAHH10126.6°126.3°
CAHNAJH11125.1°125.9°
CAHCAOCAQ123.7°126.2°
CAHCAOCAI107.2°107.5°
CAOCAHH10126.6°126.2°
NALCAPCAS114.2°120.0°
CAPNALH4117.7°120.0°
CAPCASCAR121.1°119.2°
CAPCASNAK118.1°121.0°
NAJNAMCAI109.9°108.5°
NAMNAJH11125.1°125.8°
CAOCAQCAR123.7°120.2°
CAQCAOCAI129.1°126.2°
CAQCARCAS119.8°119.7°
CAQCARCAG121.6°121.3°
CAOCAINAM106.5°108.1°
CAOCAIH12126.8°126.0°
CARCASNAK120.7°119.8°
CASCARCAG118.6°119.1°
CASNAKCAD121.2°121.3°
NAMCAIH12126.8°125.9°
CARCAGCAC121.0°118.1°
CARCAGH9119.5°120.9°
NAKCADCAC119.3°121.7°
NAKCADH7120.3°119.1°
CAGCACCAD119.2°119.9°
CAGCACH8120.4°120.0°
CACCAGH9119.5°120.9°
CACCADH7120.3°119.2°
CADCACH8120.4°120.1°
H1CAAH2109.5°109.5°
H1CAAH3109.5°109.5°
H2CAAH3109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OABCANCAANAL177.6°180.0°
OABCANNALCAP6.2°4.6°
OABCANCAAH10.0°180.0°
OABCANCAAH2120.0°60.0°
OABCANCAAH3120.0°60.0°
OABCANNALH4173.8°175.4°
CAACANNALCAP176.5°175.5°
CANCAAH1H2120.0°120.0°
CANCAAH1H3120.0°120.0°
CANCAAH2H3120.0°120.0°
CAACANNALH43.5°4.5°
CANNALCAPCAE15.7°34.8°
CANNALCAPH4180.0°180.0°
CANNALCAPCAS168.3°145.4°
NALCANCAAH1177.6°0.0°
NALCANCAAH262.4°120.0°
NALCANCAAH357.6°120.0°
CAFCAECAPH5180.0°180.0°
CAECAFCAQH6180.0°180.0°
CAFCAECAPNAL177.4°180.0°
CAFCAECAPCAS1.6°0.2°
CAECAFCAQCAO179.3°180.0°
CAECAFCAQCAR0.8°0.3°
CAPCAECAFCAQ0.2°0.0°
CAECAPNALCAS176.0°179.8°
CAECAPCASCAR1.9°0.2°
CAECAPCASNAK179.2°179.7°
CAECAPNALH4164.3°145.2°
CAPCAECAFH6179.8°180.0°
CAFCAQCAOCAH45.0°49.7°
CAFCAQCAOCAR178.4°179.8°
CAFCAQCAOCAI134.4°129.9°
CAFCAQCARCAS0.6°0.3°
CAFCAQCARCAG179.2°179.8°
CAQCAFCAEH5179.8°180.0°
NAJCAHCAOH10180.0°180.0°
CAHNAJNAMH11180.0°180.0°
NAJCAHCAOCAQ179.9°179.9°
NAJCAHCAOCAI0.4°0.3°
CAHNAJNAMCAI0.2°0.3°
CAOCAHNAJNAM0.1°0.0°
CAHCAOCAQCAI179.4°179.6°
CAHCAOCAQCAR133.4°130.6°
CAHCAOCAINAM0.5°0.5°
CAOCAHNAJH11179.8°180.0°
CAHCAOCAIH12179.5°179.8°
NALCAPCASCAR178.2°179.9°
NALCAPCASNAK2.9°0.0°
NALCAPCAEH52.6°0.0°
CAPCASCARCAQ0.8°0.1°
CAPCASCARNAK178.9°179.9°
CAPCASCARCAG179.5°180.0°
CAPCASNAKCAD179.4°180.0°
CASCAPNALH411.7°34.6°
CASCAPCAEH5178.4°179.8°
NAJNAMCAICAO0.4°0.5°
NAMNAJCAHH10179.9°180.0°
NAJNAMCAIH12179.6°179.7°
CAOCAQCARCAS178.9°179.9°
CAQCAOCAINAM180.0°179.9°
CAOCAQCARCAG0.8°0.0°
CAOCAQCAFH60.7°0.1°
CAQCAOCAHH100.1°0.1°
CAQCAOCAIH120.0°0.1°
CARCAQCAOCAI47.2°49.8°
CAQCARCASCAG179.7°179.9°
CAQCARCASNAK179.6°180.0°
CAQCARCAGCAC179.7°179.9°
CARCAQCAFH6179.2°179.7°
CAQCARCAGH90.3°0.1°
CAOCAINAMH12180.0°179.8°
CAICAOCAHH10179.6°179.8°
CARCASNAKCAD0.5°0.1°
CASCARCAGCAC0.5°0.0°
CASCARCAGH9179.4°180.0°
NAKCASCARCAG0.6°0.1°
CASNAKCADCAC0.3°0.1°
CASNAKCADH7179.7°180.0°
CAINAMNAJH11179.8°179.7°
CARCAGCACH9180.0°180.0°
CARCAGCACCAD0.3°0.0°
CARCAGCACH8179.7°179.9°
NAKCADCACCAG0.2°0.0°
NAKCADCACH7180.0°180.0°
NAKCADCACH8179.8°179.9°
CAGCACCADH8180.0°179.9°
CAGCACCADH7179.8°180.0°
CADCACCAGH9179.7°180.0°
H1CAAH2H3120.0°120.0°
H5CAECAFH60.3°0.1°
H7CADCACH80.2°0.1°
H8CACCAGH90.3°0.1°
H10CAHNAJH110.1°0.0°

222415

PDB entries from 2024-07-10

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