Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3S2doub1.42Å1.46Å
OS2doub1.42Å1.45Å
S2C12sing1.76Å1.77Å
S2Nsing1.66Å1.80Å
F3C11sing1.40Å1.36Å
C14C13sing1.46Å1.42ÅAromatic
C14C15doub1.34Å1.36ÅAromatic
C12C13doub1.40Å1.36ÅAromatic
C12C20sing1.37Å1.38ÅAromatic
C10Nsing1.46Å1.48Å
C10C11sing1.53Å1.52Å
C13C17sing1.41Å1.38ÅAromatic
NCAsing1.40Å1.50Å
C20C19doub1.39Å1.38ÅAromatic
C11F1sing1.40Å1.35Å
C11F2sing1.40Å1.35Å
C15N3sing1.37Å1.37ÅAromatic
C17N3sing1.38Å1.36ÅAromatic
C17C18doub1.39Å1.38ÅAromatic
N3C16sing1.47Å1.45Å
C19C18sing1.38Å1.37ÅAromatic
CBCAdoub1.39Å1.38ÅAromatic
CBCGsing1.38Å1.37ÅAromatic
CAC8sing1.39Å1.38ÅAromatic
CD2CGsing1.51Å1.48Å
CD2CE2sing1.53Å1.51Å
CGCD1doub1.39Å1.38ÅAromatic
C8CE1doub1.38Å1.38ÅAromatic
CE2C25sing1.53Å1.52Å
CD1CE1sing1.39Å1.38ÅAromatic
CD1N1sing1.40Å1.41Å
C25N1sing1.47Å1.45Å
N1C1sing1.35Å1.38Å
C5C2doub1.37Å1.38ÅAromatic
C5C4sing1.37Å1.41ÅAromatic
C1C2sing1.47Å1.42Å
C1OHdoub1.22Å1.22Å
C2S1sing1.76Å1.70ÅAromatic
C4C3doub1.34Å1.37ÅAromatic
C3S1sing1.71Å1.71ÅAromatic
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C15H3sing1.08Å1.08Å
C16H4sing1.09Å1.10Å
C16H5sing1.09Å1.10Å
C16H6sing1.09Å1.10Å
C3H7sing1.08Å1.08Å
C4H8sing1.08Å1.08Å
C5H9sing1.08Å1.08Å
CE1H10sing1.08Å1.08Å
C8H11sing1.08Å1.08Å
C14H12sing1.08Å1.08Å
C18H13sing1.08Å1.08Å
C19H14sing1.08Å1.08Å
C20H15sing1.08Å1.08Å
CBH16sing1.08Å1.08Å
CD2H17sing1.09Å1.10Å
CD2H18sing1.09Å1.10Å
CE2H19sing1.09Å1.10Å
CE2H20sing1.09Å1.10Å
C25H21sing1.09Å1.10Å
C25H22sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3S2O121.5°123.2°
O3S2C12108.4°106.4°
O3S2N111.9°106.4°
OS2C12104.7°106.4°
OS2N110.3°106.4°
C12S2N96.9°107.2°
S2C12C13117.1°120.1°
S2C12C20122.3°120.1°
S2NC10122.9°120.0°
S2NCA112.1°120.0°
F3C11C10110.9°109.5°
F3C11F1109.4°109.5°
F3C11F2108.3°109.5°
C13C14C15104.9°107.0°
C14C13C12133.0°134.0°
C14C13C17111.0°106.1°
C13C14H12127.6°126.5°
C14C15N3108.2°109.9°
C14C15H3125.9°125.0°
C15C14H12127.6°126.5°
C13C12C20120.5°119.7°
C12C13C17116.0°120.0°
C12C20C19120.9°120.5°
C12C20H15119.5°119.7°
NC10C11113.4°109.5°
C10NCA112.2°120.0°
NC10H1108.5°109.5°
NC10H2108.5°109.5°
C10C11F1113.0°109.4°
C10C11F2110.2°109.5°
C11C10H1108.5°109.5°
C11C10H2108.5°109.5°
C13C17N3104.0°107.1°
C13C17C18126.4°119.3°
NCACB118.0°120.0°
NCAC8120.9°120.0°
C20C19C18121.3°120.7°
C20C19H14119.4°119.7°
C19C20H15119.5°119.7°
F1C11F2104.8°109.4°
C15N3C17112.0°109.9°
C15N3C16126.5°125.1°
N3C15H3125.9°125.1°
N3C17C18129.7°133.6°
C17N3C16121.5°125.0°
C17C18C19115.0°119.8°
C17C18H13122.5°120.1°
N3C16H4109.5°109.5°
N3C16H5109.5°109.5°
N3C16H6109.4°109.4°
C19C18H13122.5°120.1°
C18C19H14119.4°119.7°
CACBCG118.8°120.2°
CBCAC8121.0°120.0°
CACBH16120.6°119.9°
CBCGCD2120.4°118.9°
CBCGCD1121.2°119.6°
CGCBH16120.6°119.9°
CAC8CE1119.7°119.8°
CAC8H11120.2°120.1°
CGCD2CE2102.9°110.5°
CD2CGCD1118.4°121.5°
CGCD2H17111.1°109.2°
CGCD2H18111.1°109.2°
CD2CE2C25110.8°109.0°
CE2CD2H17111.1°109.3°
CE2CD2H18111.1°109.3°
CD2CE2H19109.2°109.6°
CD2CE2H20109.1°109.6°
CGCD1CE1119.7°120.2°
CGCD1N1116.8°120.8°
C8CE1CD1119.7°120.2°
C8CE1H10120.2°119.9°
CE1C8H11120.2°120.1°
CE2C25N1112.9°108.0°
C25CE2H19109.1°109.6°
C25CE2H20109.2°109.4°
CE2C25H21108.6°109.8°
CE2C25H22108.6°109.8°
CE1CD1N1123.5°119.1°
CD1CE1H10120.1°119.9°
CD1N1C25116.8°118.9°
CD1N1C1125.3°120.6°
C25N1C1117.9°120.6°
N1C25H21108.6°109.9°
N1C25H22108.6°109.5°
N1C1C2116.7°120.0°
N1C1OH123.0°120.0°
C2C5C4112.2°113.3°
C5C2C1132.5°125.5°
C5C2S1112.7°109.1°
C2C5H9123.9°123.3°
C5C4C3111.4°115.1°
C5C4H8124.3°122.5°
C4C5H9123.9°123.3°
C2C1OH119.2°119.9°
C1C2S1114.8°125.5°
C2S1C390.7°91.6°
C4C3S1113.0°111.0°
C4C3H7123.5°124.6°
C3C4H8124.3°122.4°
S1C3H7123.5°124.5°
H1C10H2109.5°109.4°
H4C16H5109.4°109.5°
H4C16H6109.5°109.5°
H5C16H6109.5°109.5°
H17CD2H18109.5°109.2°
H19CE2H20109.5°109.7°
H21C25H22109.5°109.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3S2OC12122.9°122.9°
O3S2ON133.9°123.0°
O3S2C12N115.8°113.5°
O3S2C12C1334.0°177.7°
O3S2C12C20151.1°2.6°
O3S2NC1069.4°135.0°
O3S2NCA152.2°45.0°
OS2C12N113.1°113.6°
OS2C12C13165.0°49.4°
OS2C12C2020.0°130.3°
OS2NC1069.1°2.1°
OS2NCA69.2°177.9°
S2C12C13C143.4°0.2°
S2C12C13C20175.1°179.7°
C12S2NC10177.5°111.5°
S2C12C13C17176.7°179.7°
C12S2NCA39.2°68.5°
S2C12C20C19176.5°179.8°
S2C12C20H153.5°0.3°
NS2C12C1381.9°64.2°
NS2C12C2093.1°116.1°
S2NC10CA138.3°180.0°
S2NC10C11111.1°95.9°
S2NCACB67.6°153.3°
S2NCAC8109.0°26.7°
S2NC10H1128.3°144.1°
S2NC10H29.5°24.1°
F3C11C10N114.1°55.0°
F3C11C10F1123.2°120.0°
F3C11C10F2119.9°120.0°
F3C11F1F2115.9°120.0°
F3C11C10H1125.3°175.0°
F3C11C10H26.4°65.1°
C13C14C15H12180.0°180.0°
C14C13C12C17179.9°179.9°
C14C13C12C20178.5°179.9°
C13C14C15N30.1°0.0°
C14C13C17N30.5°0.1°
C14C13C17C18179.4°180.0°
C13C14C15H3179.9°179.9°
C15C14C13C12179.6°180.0°
C15C14C13C170.2°0.0°
C14C15N3H3180.0°179.9°
C14C15N3C170.5°0.0°
C14C15N3C16179.7°180.0°
C13C12C20C191.7°0.1°
C12C13C17N3179.4°180.0°
C12C13C17C180.7°0.1°
C12C13C14H120.4°0.1°
C13C12C20H15178.3°180.0°
C20C12C13C171.7°0.0°
C12C20C19H15180.0°179.9°
C12C20C19C180.6°0.1°
C12C20C19H14179.4°179.9°
NC10C11H1120.6°120.0°
NC10C11H2120.6°120.0°
NC10C11F19.1°65.1°
NC10C11F2126.0°175.0°
C10NCACB75.3°26.7°
C10NCAC8108.2°153.3°
NC10H1H2118.2°120.0°
C11C10NCA110.6°84.1°
C10C11F1F2120.0°120.0°
C11C10H1H2118.2°120.0°
C13C17N3C150.6°0.0°
C13C17N3C18179.9°179.9°
C13C17N3C16179.6°180.0°
C13C17C18C190.3°0.1°
C17C13C14H12179.8°180.0°
C13C17C18H13179.7°180.0°
NCACBC8176.6°180.0°
NCACBCG177.1°180.0°
NCAC8CE1176.3°179.9°
CANC10H110.0°35.9°
CANC10H2128.8°155.9°
NCAC8H113.6°0.1°
NCACBH162.9°0.0°
C20C19C18C170.4°0.0°
C20C19C18H14180.0°180.0°
C20C19C18H13179.6°180.0°
F1C11C10H1111.5°55.0°
F1C11C10H2129.7°174.9°
F2C11C10H15.4°65.0°
F2C11C10H2113.5°55.0°
C15N3C17C16179.9°180.0°
C15N3C17C18179.3°180.0°
C15N3C16H4180.0°90.0°
C15N3C16H560.0°150.0°
C15N3C16H660.0°30.0°
N3C15C14H12179.9°180.0°
N3C17C18C19179.6°180.0°
C17N3C15H3179.5°179.9°
C17N3C16H40.2°90.0°
C17N3C16H5119.8°30.0°
C17N3C16H6120.2°150.0°
N3C17C18H130.4°0.0°
C18C17N3C160.5°0.0°
C17C18C19H13180.0°180.0°
C17C18C19H14179.6°180.0°
C16N3C15H30.3°0.1°
N3C16H4H5120.0°120.0°
N3C16H4H6120.0°119.9°
N3C16H5H6120.0°120.0°
C18C19C20H15179.4°180.0°
CACBCGH16180.0°180.0°
CACBCGCD2179.3°179.5°
CACBCGCD10.5°0.1°
CBCAC8CE10.1°0.1°
CBCAC8H11179.9°179.9°
CGCBCAC80.5°0.0°
CBCGCD2CD1178.9°179.7°
CBCGCD2CE2129.2°159.4°
CBCGCD1CE10.1°0.2°
CBCGCD1N1179.9°179.6°
CBCGCD2H1710.3°80.3°
CBCGCD2H18111.8°39.2°
CAC8CE1H11180.0°180.0°
CAC8CE1CD10.7°0.1°
CAC8CE1H10179.3°179.9°
C8CACBH16179.5°180.0°
CGCD2CE2H17119.0°120.3°
CGCD2CE2H18118.9°120.3°
CGCD2CE2C2564.3°51.4°
CD2CGCD1CE1178.8°179.5°
CD2CGCD1N11.2°0.7°
CD2CGCBH160.6°0.5°
CGCD2H17H18123.0°119.4°
CGCD2CE2H1955.9°171.3°
CGCD2CE2H20175.5°68.3°
CE2CD2CGCD149.7°20.9°
CD2CE2C25H19120.2°119.9°
CD2CE2C25H20120.2°119.8°
CD2CE2C25N130.7°63.0°
CE2CD2H17H18123.0°119.5°
CD2CE2H19H20119.4°120.3°
CD2CE2C25H21151.2°177.2°
CD2CE2C25H2289.8°56.3°
CGCD1CE1C80.7°0.1°
CGCD1CE1N1180.0°179.8°
CGCD1N1C2541.1°13.4°
CGCD1N1C1142.0°166.4°
CGCD1CE1H10179.3°179.9°
CD1CGCBH16179.5°179.9°
CD1CGCD2H17168.6°99.4°
CD1CGCD2H1869.3°141.2°
C8CE1CD1H10180.0°180.0°
C8CE1CD1N1179.3°179.7°
CE2C25N1CD122.9°44.4°
CE2C25N1H21120.5°119.7°
CE2C25N1H22120.5°119.5°
CE2C25N1C1159.9°135.4°
C25CE2CD2H17176.8°68.9°
C25CE2CD2H1854.7°171.7°
C25CE2H19H20119.4°120.2°
CE2C25H21H22118.5°120.8°
CE1CD1N1C25138.9°166.8°
CE1CD1N1C138.0°13.4°
CD1CE1C8H11179.3°179.9°
CD1N1C25C1177.2°179.8°
CD1N1C1C234.0°177.4°
CD1N1C1OH158.0°2.7°
N1CD1CE1H100.7°0.3°
CD1N1C25H2197.6°164.1°
CD1N1C25H22143.5°75.1°
C25N1C1C2149.1°2.4°
C25N1C1OH19.0°177.5°
N1C25CE2H1989.5°177.1°
N1C25CE2H20150.9°56.8°
N1C25H21H22118.4°120.6°
N1C1C2C515.3°150.2°
N1C1C2OH168.5°179.9°
N1C1C2S1166.1°29.4°
C1N1C25H2179.6°15.7°
C1N1C25H2239.4°105.1°
C2C5C4H9180.0°179.9°
C5C2C1S1178.6°179.6°
C5C2C1OH153.2°29.8°
C2C5C4C30.6°0.4°
C5C2S1C31.0°0.2°
C2C5C4H8179.4°179.8°
C4C5C2C1179.7°179.9°
C4C5C2S11.1°0.4°
C5C4C3H8180.0°179.8°
C5C4C3S10.1°0.2°
C5C4C3H7179.9°179.8°
C1C2S1C3179.8°179.9°
C1C2C5H90.3°0.0°
OHC1C2S125.4°150.6°
C2S1C3C40.6°0.0°
C2S1C3H7179.4°180.0°
S1C2C5H9178.9°179.7°
C4C3S1H7180.0°180.0°
C3C4C5H9179.4°179.7°
S1C3C4H8179.9°180.0°
H3C15C14H120.1°0.1°
H4C16H5H6120.0°120.0°
H7C3C4H80.1°0.0°
H8C4C5H90.6°0.1°
H10CE1C8H110.7°0.1°
H13C18C19H140.4°0.1°
H14C19C20H150.6°0.0°
H17CD2CE2H1963.0°51.1°
H17CD2CE2H2056.6°171.4°
H18CD2CE2H19174.9°68.4°
H18CD2CE2H2065.5°51.9°
H19CE2C25H2131.0°57.3°
H19CE2C25H22150.0°63.6°
H20CE2C25H2188.6°63.0°
H20CE2C25H2230.4°176.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon