Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5PI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C14O1doub1.21Å1.23Å
C14N5sing1.35Å1.38Å
C14C5sing1.51Å1.55Å
N5C15sing1.46Å1.50Å
N5HN5sing0.97Å1.02Å
C15C18sing1.53Å1.50Å
C15C20sing1.51Å1.54Å
C15H15sing1.09Å1.12Å
C18C19sing1.53Å1.51Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.12Å
C19C2sing1.51Å1.49Å
C19H191sing1.09Å1.11Å
C19H192sing1.09Å1.12Å
C20O5doub1.21Å1.22Å
C20N6sing1.35Å1.30Å
N6C21sing1.47Å1.44Å
N6HN6sing0.97Å1.02Å
C21C25sing1.51Å1.50Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.12Å
C16C17doub1.38Å1.39ÅAromatic
C16C25sing1.38Å1.41ÅAromatic
C16H16sing1.08Å1.10Å
C17C22sing1.39Å1.41ÅAromatic
C17H17sing1.08Å1.10Å
C22C23doub1.40Å1.40ÅAromatic
C22C26sing1.48Å1.48Å
C23C24sing1.38Å1.39ÅAromatic
C23H23sing1.08Å1.10Å
C24C25doub1.38Å1.40ÅAromatic
C24H24sing1.08Å1.10Å
C26N1sing1.38Å1.33Å
C26N2doub1.30Å1.34Å
N1HN11sing0.97Å1.02Å
N1HN12sing0.97Å1.02Å
C2O2doub1.21Å1.20Å
C2N3sing1.35Å1.31Å
N3HN31sing0.97Å1.02Å
N3HN32sing0.97Å1.02Å
C1C5sing1.53Å1.57Å
C1C28sing1.51Å1.52Å
C1H11sing1.09Å1.11Å
C1H12Asing1.09Å1.12Å
N4C5sing1.46Å1.45Å
N4S1sing1.66Å1.68Å
N4HN4sing0.97Å1.02Å
C5H5sing1.09Å1.12Å
S1O4doub1.42Å1.42Å
S1O3doub1.42Å1.42Å
S1C9sing1.81Å1.76Å
C9C8sing1.53Å1.49Å
C9H91sing1.09Å1.12Å
C9H92sing1.09Å1.11Å
C8H81sing1.09Å1.11Å
C8H82sing1.09Å1.12Å
C8H83sing1.09Å1.11Å
N2HN2sing0.97Å1.02Å
C13C12doub1.38Å1.44ÅAromatic
C13C6sing1.39Å1.43ÅAromatic
C13H13sing1.08Å1.10Å
C12C3sing1.39Å1.40ÅAromatic
C12H12sing1.08Å1.10Å
C3C4doub1.41Å1.44ÅAromatic
C3N7sing1.38Å1.38ÅAromatic
C4C27sing1.40Å1.41ÅAromatic
C4C28sing1.46Å1.44ÅAromatic
C27C6doub1.38Å1.45ÅAromatic
C27H27sing1.08Å1.10Å
C6O6sing1.36Å1.40Å
N7C29sing1.37Å1.35ÅAromatic
N7HN7sing0.97Å1.02Å
C29C28doub1.34Å1.40ÅAromatic
C29H29sing1.08Å1.10Å
O6C7sing1.43Å1.42Å
C7C10sing1.53Å1.53Å
C7H71sing1.09Å1.11Å
C7H72sing1.09Å1.12Å
C10C11sing1.53Å1.53Å
C10H101sing1.09Å1.11Å
C10H102sing1.09Å1.12Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.12Å
C11H113sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C14N5123.2°120.0°
O1C14C5117.6°119.9°
N5C14C5119.2°120.1°
C14N5C15119.6°120.0°
C14N5HN5116.1°119.9°
C14C5C1114.6°109.5°
C14C5N4101.6°109.6°
C14C5H5112.6°109.4°
C15N5HN5124.3°120.0°
N5C15C18114.2°109.5°
N5C15C20112.5°109.5°
N5C15H15102.6°109.5°
C18C15C20105.1°109.4°
C18C15H15110.4°109.5°
C15C18C19112.0°109.4°
C15C18H181111.3°109.5°
C15C18H182111.3°109.5°
C20C15H15112.1°109.4°
C15C20O5122.1°120.0°
C15C20N6114.9°120.0°
C19C18H181111.3°109.4°
C19C18H182111.3°109.5°
C18C19C2111.7°109.5°
C18C19H191111.4°109.5°
C18C19H192111.4°109.5°
H181C18H18299.1°109.4°
C2C19H191111.4°109.5°
C2C19H192111.4°109.4°
C19C2O2121.8°120.0°
C19C2N3114.5°120.0°
H191C19H19299.0°109.5°
O5C20N6123.0°120.0°
C20N6C21116.6°120.0°
C20N6HN6117.1°120.1°
C21N6HN6126.2°120.0°
N6C21C25115.6°109.5°
N6C21H211110.0°109.5°
N6C21H212110.0°109.5°
C25C21H211110.0°109.5°
C25C21H212110.0°109.4°
C21C25C16121.7°119.8°
C21C25C24118.8°119.9°
H211C21H212100.3°109.5°
C17C16C25119.6°120.1°
C17C16H16119.6°120.0°
C16C17C22120.7°120.0°
C16C17H17119.0°120.0°
C25C16H16120.8°119.9°
C16C25C24119.5°120.3°
C22C17H17120.3°120.0°
C17C22C23118.6°119.7°
C17C22C26120.7°120.2°
C23C22C26120.6°120.1°
C22C23C24120.8°119.9°
C22C23H23120.2°120.1°
C22C26N1121.0°120.0°
C22C26N2121.6°120.0°
C24C23H23119.0°120.0°
C23C24C25120.5°120.1°
C23C24H24119.2°119.9°
C25C24H24120.2°120.0°
N1C26N2117.3°120.0°
C26N1HN11108.1°120.1°
C26N1HN12121.0°120.0°
C26N2HN292.5°120.0°
HN11N1HN12108.0°119.9°
O2C2N3123.7°120.0°
C2N3HN31114.5°120.0°
C2N3HN32123.7°120.0°
HN31N3HN32121.7°120.0°
C5C1C28116.7°109.5°
C5C1H11109.6°109.5°
C5C1H12A109.6°109.5°
C1C5N4112.8°109.5°
C1C5H5101.3°109.4°
C28C1H11109.6°109.5°
C28C1H12A109.6°109.4°
C1C28C4128.6°126.5°
C1C28C29125.2°126.5°
H11C1H12A100.6°109.5°
C5N4S1117.8°120.0°
C5N4HN4109.2°119.9°
N4C5H5114.4°109.5°
S1N4HN4109.2°120.0°
N4S1O4100.5°102.8°
N4S1O3101.9°102.8°
N4S1C9110.5°103.2°
O4S1O3124.6°122.1°
O4S1C9106.1°111.6°
O3S1C9112.1°111.6°
S1C9C8111.4°109.5°
S1C9H91111.5°109.5°
S1C9H92111.5°109.5°
C8C9H91111.4°109.5°
C8C9H92111.5°109.5°
C9C8H81111.5°109.4°
C9C8H82111.5°109.5°
C9C8H83111.5°109.5°
H91C9H9298.9°109.5°
H81C8H82111.5°109.5°
H81C8H8398.9°109.4°
H82C8H83111.4°109.5°
C12C13C6119.3°120.6°
C12C13H13120.5°119.7°
C13C12C3122.3°120.0°
C13C12H12120.1°120.0°
C6C13H13120.2°119.7°
C13C6C27117.5°120.2°
C13C6O6116.9°119.9°
C3C12H12117.6°120.0°
C12C3C4119.1°119.6°
C12C3N7133.5°133.4°
C4C3N7107.2°107.1°
C3C4C27118.8°119.9°
C3C4C28106.5°106.1°
C3N7C29109.8°109.9°
C3N7HN7126.0°125.1°
C27C4C28134.5°134.0°
C4C27C6122.9°119.6°
C4C27H27117.1°120.2°
C4C28C29106.1°107.0°
C6C27H27120.1°120.2°
C27C6O6125.6°119.9°
C6O6C7115.4°106.8°
C29N7HN7124.2°125.1°
N7C29C28110.3°110.0°
N7C29H29123.4°125.0°
C28C29H29126.3°125.0°
O6C7C10107.5°109.4°
O6C7H71112.9°109.4°
O6C7H72112.9°109.5°
C10C7H71112.9°109.5°
C10C7H72112.9°109.5°
C7C10C11112.1°109.4°
C7C10H101111.3°109.5°
C7C10H102111.2°109.4°
H71C7H7297.5°109.5°
C11C10H101111.3°109.5°
C11C10H102111.3°109.5°
C10C11H111111.3°109.4°
C10C11H112112.1°109.5°
C10C11H113111.3°109.4°
H101C10H10299.1°109.5°
H111C11H112111.2°109.5°
H111C11H11399.1°109.5°
H112C11H113111.2°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C14N5C5179.5°179.9°
O1C14N5C156.8°0.0°
O1C14N5HN5173.2°180.0°
O1C14C5C181.3°90.1°
O1C14C5N440.7°30.0°
O1C14C5H5163.6°150.0°
C14N5C15HN5180.0°180.0°
C14N5C15C18178.3°90.0°
C14N5C15C2058.6°150.0°
C14N5C15H1562.2°30.0°
N5C14C5C199.2°90.0°
N5C14C5N4138.8°150.0°
N5C14C5H515.9°29.9°
C5C14N5C15173.7°179.9°
C5C14N5HN56.3°0.0°
C14C5C1N4115.7°120.1°
C14C5C1H5121.5°119.9°
C14C5C1C28171.8°179.9°
C14C5C1H1146.5°60.0°
C14C5C1H12A62.9°60.0°
C14C5N4H5121.6°120.0°
C14C5N4S1114.1°120.0°
C14C5N4HN411.2°60.0°
N5C15C18C20123.8°120.0°
N5C15C18H15115.0°120.0°
N5C15C20H15115.1°120.0°
N5C15C18C1954.1°60.0°
N5C15C18H181179.4°60.0°
N5C15C18H18271.1°180.0°
N5C15C20O542.4°0.0°
N5C15C20N6137.3°180.0°
HN5N5C15C181.7°90.0°
HN5N5C15C20121.4°30.0°
HN5N5C15H15117.8°149.9°
C18C15C20H15120.0°120.0°
C15C18C19H181125.2°120.0°
C15C18C19H182125.3°120.0°
C15C18H181H182117.2°120.0°
C15C18C19C2175.0°180.0°
C15C18C19H19159.7°60.0°
C15C18C19H19249.8°60.0°
C18C15C20O582.4°120.0°
C18C15C20N697.8°60.0°
C20C15C18C19178.0°180.0°
C20C15C18H18156.8°60.0°
C20C15C18H18252.7°60.0°
C15C20O5N6179.8°180.0°
C15C20N6C21178.7°180.0°
C15C20N6HN61.3°0.0°
H15C15C18C1960.9°60.0°
H15C15C18H18164.3°180.0°
H15C15C18H182173.8°60.0°
H15C15C20O5157.6°120.0°
H15C15C20N622.2°60.0°
C19C18H181H182117.2°120.0°
C18C19C2H191125.3°120.0°
C18C19C2H192125.2°120.0°
C18C19H191H192117.3°120.0°
C18C19C2O273.0°0.0°
C18C19C2N3108.3°180.0°
H181C18C19C249.8°60.0°
H181C18C19H191175.0°180.0°
H181C18C19H19275.5°60.0°
H182C18C19C259.7°60.0°
H182C18C19H19165.5°60.0°
H182C18C19H192175.0°180.0°
C2C19H191H192117.3°120.0°
C19C2O2N3178.6°180.0°
C19C2N3HN31180.0°180.0°
C19C2N3HN321.3°0.1°
H191C19C2O252.2°120.0°
H191C19C2N3126.5°60.0°
H192C19C2O2161.7°120.0°
H192C19C2N317.0°60.0°
O5C20N6C211.5°0.0°
O5C20N6HN6178.5°180.0°
C20N6C21HN6180.0°180.0°
C20N6C21C2597.3°180.0°
C20N6C21H21127.9°60.0°
C20N6C21H212137.4°60.0°
N6C21C25H211125.2°120.0°
N6C21C25H212125.3°120.0°
N6C21H211H212115.8°120.0°
N6C21C25C1657.0°90.0°
N6C21C25C24121.0°90.3°
HN6N6C21C2582.7°0.0°
HN6N6C21H211152.0°120.0°
HN6N6C21H21242.6°120.0°
C25C21H211H212115.8°120.0°
C21C25C16C17175.3°180.0°
C21C25C16C24178.0°179.7°
C21C25C16H164.7°0.0°
C21C25C24C23173.6°179.7°
C21C25C24H246.4°0.3°
H211C21C25C1668.3°30.0°
H211C21C25C24113.7°149.7°
H212C21C25C16177.8°150.0°
H212C21C25C244.2°29.7°
C17C16C25H16180.0°180.0°
C16C17C22H17180.0°180.0°
C16C17C22C236.0°0.0°
C16C17C22C26170.0°180.0°
C17C16C25C242.7°0.3°
C25C16C17C222.6°0.0°
C25C16C17H17177.5°180.0°
C16C25C24C234.4°0.6°
C16C25C24H24175.6°180.0°
H16C16C17C22177.5°180.0°
H16C16C17H172.5°0.0°
H16C16C25C24177.3°179.7°
C17C22C23C26176.0°180.0°
C17C22C23C244.2°0.3°
C17C22C23H23175.8°180.0°
C17C22C26N16.5°180.0°
C17C22C26N2168.7°0.1°
H17C17C22C23174.1°180.0°
H17C17C22C269.9°0.0°
C22C23C24H23180.0°179.7°
C22C23C24C251.0°0.6°
C22C23C24H24179.0°180.0°
C23C22C26N1177.6°0.0°
C23C22C26N27.2°179.9°
C26C22C23C24171.8°179.7°
C26C22C23H238.2°0.0°
C22C26N1N2175.4°179.9°
C22C26N1HN1154.7°180.0°
C22C26N1HN12180.0°0.0°
C22C26N2HN237.0°179.9°
C23C24C25H24180.0°179.5°
H23C23C24C25179.0°179.7°
H23C23C24H241.0°0.3°
C26N1HN11HN12132.6°180.0°
N1C26N2HN2138.4°0.0°
N2C26N1HN11120.7°0.1°
N2C26N1HN124.6°179.9°
O2C2N3HN311.3°0.0°
O2C2N3HN32180.0°179.9°
C2N3HN31HN32178.7°179.9°
C5C1C28H11125.3°120.0°
C5C1C28H12A125.3°120.0°
C5C1H11H12A115.3°120.0°
C1C5N4H5115.1°119.9°
C1C5N4S1122.6°120.0°
C1C5N4HN4112.1°60.0°
C5C1C28C485.9°90.0°
C5C1C28C2997.3°90.0°
C28C1H11H12A115.4°119.9°
C28C1C5N456.1°60.0°
C28C1C5H566.6°60.0°
C1C28C4C3178.8°180.0°
C1C28C4C273.4°0.2°
C1C28C4C29177.3°180.0°
C1C28C29N7178.5°180.0°
C1C28C29H291.5°0.1°
H11C1C5N469.1°60.1°
H11C1C5H5168.1°180.0°
H11C1C28C4148.8°30.0°
H11C1C28C2928.0°149.9°
H12AC1C5N4178.6°179.9°
H12AC1C5H558.7°60.0°
H12AC1C28C439.3°150.0°
H12AC1C28C29137.5°30.0°
C5N4S1HN4125.3°180.0°
C5N4S1O439.6°176.2°
C5N4S1O3168.5°56.2°
C5N4S1C972.2°60.1°
S1N4C5H57.5°0.0°
N4S1O4O3112.4°114.3°
N4S1O4C9115.1°110.0°
N4S1O3C9118.1°110.0°
N4S1C9C881.6°180.0°
N4S1C9H9143.6°60.0°
N4S1C9H92153.1°60.0°
HN4N4C5H5132.8°180.0°
HN4N4S1O485.7°3.8°
HN4N4S1O343.2°123.8°
HN4N4S1C9162.5°120.0°
O4S1O3C9130.2°135.7°
O4S1C9C8170.3°70.3°
O4S1C9H9164.4°169.8°
O4S1C9H9245.1°49.7°
O3S1C9C831.3°70.2°
O3S1C9H91156.5°49.7°
O3S1C9H9294.0°169.8°
S1C9C8H91125.3°120.0°
S1C9C8H92125.3°120.0°
S1C9H91H92117.4°120.0°
S1C9C8H8154.8°180.0°
S1C9C8H82180.0°60.1°
S1C9C8H8354.7°60.0°
C8C9H91H92117.4°120.0°
C9C8H81H82125.2°120.0°
C9C8H81H83117.4°120.0°
C9C8H82H83125.2°120.0°
H91C9C8H81180.0°60.0°
H91C9C8H8254.7°180.0°
H91C9C8H8370.5°60.0°
H92C9C8H8170.5°60.0°
H92C9C8H8254.8°59.9°
H92C9C8H83NaN°NaN°
H81C8H82H83109.5°120.0°
C12C13C6H13180.0°179.8°
C13C12C3H12180.0°179.9°
C13C12C3C41.3°0.1°
C13C12C3N7174.8°180.0°
C12C13C6C271.7°0.4°
C12C13C6O6177.1°179.9°
C6C13C12C30.7°0.1°
C6C13C12H12179.3°180.0°
C13C6C27C40.7°0.5°
C13C6C27O6178.7°179.7°
C13C6C27H27179.3°179.6°
C13C6O6C7135.1°0.0°
H13C13C12C3179.3°180.0°
H13C13C12H120.7°0.1°
H13C13C6C27178.3°179.8°
H13C13C6O62.9°0.1°
C12C3C4N7177.0°179.9°
C12C3C4C272.2°0.2°
C12C3C4C28178.5°179.9°
C12C3N7C29177.2°179.9°
C12C3N7HN72.8°0.2°
H12C12C3C4178.8°180.0°
H12C12C3N75.2°0.1°
C3C4C27C28175.0°179.8°
C3C4C27C61.2°0.5°
C3C4C27H27178.8°179.7°
C4C3N7C290.8°0.0°
C4C3N7HN7179.1°179.9°
C3C4C28C291.6°0.0°
N7C3C4C27174.8°179.8°
N7C3C4C281.5°0.0°
C3N7C29HN7180.0°179.9°
C3N7C29C280.2°0.0°
C3N7C29H29179.8°179.9°
C4C27C6H27180.0°179.8°
C4C27C6O6178.0°179.8°
C27C4C28C29173.9°179.8°
C28C4C27C6176.2°179.8°
C28C4C27H273.8°0.1°
C4C28C29N71.1°0.0°
C4C28C29H29178.9°179.9°
C27C6O6C746.2°179.7°
H27C27C6O62.0°0.1°
C6O6C7C10177.7°180.0°
C6O6C7H7157.1°60.0°
C6O6C7H7252.4°60.0°
N7C29C28H29180.0°179.9°
HN7N7C29C28179.8°179.9°
HN7N7C29H290.2°0.0°
O6C7C10H71125.3°119.9°
O6C7C10H72125.2°120.0°
O6C7H71H72118.8°120.0°
O6C7C10C11176.6°180.0°
O6C7C10H10151.4°60.0°
O6C7C10H10258.1°60.0°
C10C7H71H72118.9°120.0°
C7C10C11H101125.3°120.0°
C7C10C11H102125.3°119.9°
C7C10H101H102117.1°120.0°
C7C10C11H11154.7°180.0°
C7C10C11H112180.0°60.0°
C7C10C11H11354.7°60.0°
H71C7C10C1158.1°60.0°
H71C7C10H101176.6°180.0°
H71C7C10H10267.2°59.9°
H72C7C10C1151.4°60.0°
H72C7C10H10173.9°60.0°
H72C7C10H102176.7°180.0°
C11C10H101H102117.2°120.0°
C10C11H111H112125.7°120.0°
C10C11H111H113117.2°120.0°
C10C11H112H113125.3°120.0°
H101C10C11H111180.0°60.0°
H101C10C11H11254.7°60.0°
H101C10C11H11370.5°180.0°
H102C10C11H11170.5°60.1°
H102C10C11H11254.7°179.9°
H102C10C11H113180.0°59.9°
H111C11H112H113109.4°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon