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SummaryGeometryRelated PDB entries

5PE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAAOANsing1.43Å1.48Å
OANCATsing1.36Å1.41Å
CATCAJsing1.39Å1.41ÅAromatic
CATCARdoub1.39Å1.40ÅAromatic
CAJCASdoub1.38Å1.42ÅAromatic
CAROACsing1.36Å1.37Å
CARCAHsing1.39Å1.42ÅAromatic
CAHCAIdoub1.38Å1.41ÅAromatic
CAICASsing1.38Å1.40ÅAromatic
CASCAUsing1.51Å1.56Å
CAUSAOsing1.84Å1.84Å
CAUNAVsing1.47Å1.49Å
SAOCAKsing1.84Å1.80Å
CAKCAPsing1.51Å1.57Å
CAPOABdoub1.21Å1.22Å
CAPNAVsing1.33Å1.37Å
NAVCALsing1.46Å1.46Å
CALCAQsing1.51Å1.52Å
CAQCAGsing1.38Å1.39ÅAromatic
CAQNAMdoub1.32Å1.35ÅAromatic
CAGCAEdoub1.39Å1.41ÅAromatic
CAECADsing1.39Å1.39ÅAromatic
CADCAFdoub1.38Å1.40ÅAromatic
CAFNAMsing1.32Å1.33ÅAromatic
CAAHAA1sing1.09Å1.10Å
CAAHAA2sing1.09Å1.10Å
CAAHAA3sing1.09Å1.10Å
CAJHAJsing1.08Å1.08Å
OACHACsing0.97Å0.95Å
CAHHAHsing1.08Å1.08Å
CAIHAIsing1.08Å1.08Å
CAUHAUsing1.09Å1.10Å
CAKHAK1sing1.09Å1.10Å
CAKHAK2sing1.09Å1.10Å
CALHAL1sing1.09Å1.10Å
CALHAL2sing1.09Å1.10Å
CAGHAGsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAAOANCAT118.6°117.0°
OANCAAHAA1109.5°109.5°
OANCAAHAA2109.5°109.5°
OANCAAHAA3109.5°109.5°
OANCATCAJ123.1°120.0°
OANCATCAR118.9°120.1°
CAJCATCAR117.9°119.8°
CATCAJCAS121.9°120.0°
CATCAJHAJ119.0°120.0°
CATCAROAC117.6°120.1°
CATCARCAH121.1°119.9°
CAJCASCAI119.6°120.1°
CAJCASCAU120.9°119.9°
CASCAJHAJ119.1°120.0°
OACCARCAH121.2°120.1°
CAROACHAC109.5°114.0°
CARCAHCAI120.4°120.0°
CARCAHHAH119.8°120.0°
CAHCAICAS119.1°120.2°
CAICAHHAH119.8°120.0°
CAHCAIHAI120.5°119.9°
CAICASCAU119.4°120.0°
CASCAIHAI120.4°119.9°
CASCAUSAO113.1°110.7°
CASCAUNAV112.2°110.6°
CASCAUHAU110.0°110.6°
SAOCAUNAV103.6°103.1°
CAUSAOCAK97.7°94.1°
SAOCAUHAU106.8°110.7°
CAUNAVCAP113.1°117.9°
CAUNAVCAL121.7°121.0°
NAVCAUHAU110.9°110.9°
SAOCAKCAP100.4°102.3°
SAOCAKHAK1111.7°110.9°
SAOCAKHAK2111.7°110.9°
CAKCAPOAB119.1°121.9°
CAKCAPNAV119.1°116.4°
CAPCAKHAK1111.7°110.9°
CAPCAKHAK2111.7°110.9°
OABCAPNAV121.5°121.8°
CAPNAVCAL121.3°121.0°
NAVCALCAQ116.1°109.5°
NAVCALHAL1107.8°109.5°
NAVCALHAL2107.8°109.5°
CALCAQCAG121.5°119.6°
CALCAQNAM118.2°119.6°
CAQCALHAL1107.8°109.5°
CAQCALHAL2107.8°109.5°
CAGCAQNAM120.3°120.8°
CAQCAGCAE118.4°119.2°
CAQCAGHAG120.8°120.4°
CAQNAMCAF121.5°121.7°
CAGCAECAD120.4°118.4°
CAECAGHAG120.8°120.4°
CAGCAEHAE119.8°120.8°
CAECADCAF117.6°119.2°
CADCAEHAE119.8°120.8°
CAECADHAD121.2°120.4°
CADCAFNAM121.7°120.7°
CAFCADHAD121.2°120.4°
CADCAFHAF119.1°119.7°
NAMCAFHAF119.2°119.6°
HAA1CAAHAA2109.5°109.5°
HAA1CAAHAA3109.4°109.5°
HAA2CAAHAA3109.5°109.4°
HAK1CAKHAK2109.5°110.8°
HAL1CALHAL2109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAAOANCATCAJ9.5°0.0°
CAAOANCATCAR171.3°179.7°
OANCAAHAA1HAA2120.0°120.0°
OANCAAHAA1HAA3120.0°120.1°
OANCAAHAA2HAA3120.0°120.0°
OANCATCAJCAR179.2°179.7°
OANCATCAJCAS179.8°180.0°
OANCATCAROAC2.4°0.1°
OANCATCARCAH179.3°179.9°
CATOANCAAHAA1180.0°180.0°
CATOANCAAHAA260.0°60.0°
CATOANCAAHAA360.0°60.0°
OANCATCAJHAJ0.2°0.0°
CATCAJCASHAJ180.0°180.0°
CAJCATCAROAC178.4°179.8°
CAJCATCARCAH1.5°0.4°
CATCAJCASCAI0.1°0.0°
CATCAJCASCAU179.5°180.0°
CARCATCAJCAS0.7°0.3°
CATCAROACCAH176.9°179.9°
CATCARCAHCAI1.6°0.1°
CARCATCAJHAJ179.4°179.7°
CATCAROACHAC180.0°90.0°
CATCARCAHHAH178.4°180.0°
CAJCASCAICAH0.1°0.3°
CAJCASCAICAU179.3°180.0°
CAJCASCAUSAO54.3°91.5°
CAJCASCAUNAV62.4°154.9°
CAJCASCAIHAI179.9°180.0°
CAJCASCAUHAU173.6°31.6°
OACCARCAHCAI178.3°180.0°
OACCARCAHHAH1.7°0.2°
CARCAHCAIHAH180.0°179.8°
CARCAHCAICAS0.7°0.2°
CAHCAROACHAC3.1°89.9°
CARCAHCAIHAI179.3°180.0°
CAHCAICASHAI180.0°179.8°
CAHCAICASCAU179.5°179.8°
CAICASCAUSAO126.4°88.6°
CAICASCAUNAV116.9°25.1°
CAICASCAJHAJ179.8°180.0°
CASCAICAHHAH179.3°179.7°
CAICASCAUHAU7.1°148.4°
CASCAUSAONAV121.7°118.3°
CASCAUSAOHAU121.1°123.0°
CASCAUNAVHAU123.5°123.1°
CASCAUSAOCAK145.1°140.3°
CASCAUNAVCAP145.8°135.1°
CASCAUNAVCAL56.2°44.9°
CAUCASCAJHAJ0.5°0.0°
CAUCASCAIHAI0.5°0.0°
SAOCAUNAVHAU114.3°118.5°
CAUSAOCAKCAP16.1°21.5°
SAOCAUNAVCAP23.5°16.8°
SAOCAUNAVCAL178.4°163.2°
CAUSAOCAKHAK1102.4°96.7°
CAUSAOCAKHAK2134.6°139.7°
NAVCAUSAOCAK23.4°21.9°
CAUNAVCAPCAK13.2°0.3°
CAUNAVCAPOAB172.5°179.6°
CAUNAVCAPCAL158.1°180.0°
CAUNAVCALCAQ103.8°90.0°
CAUNAVCALHAL117.1°150.0°
CAUNAVCALHAL2135.2°30.1°
SAOCAKCAPHAK1118.5°118.2°
SAOCAKCAPHAK2118.5°118.2°
SAOCAKCAPOAB169.8°163.9°
SAOCAKCAPNAV4.7°16.2°
CAKSAOCAUHAU93.8°96.7°
SAOCAKHAK1HAK2124.2°123.5°
CAKCAPOABNAV174.3°179.9°
CAKCAPNAVCAL171.3°179.7°
CAPCAKHAK1HAK2124.2°123.6°
OABCAPNAVCAL14.4°0.4°
OABCAPCAKHAK171.7°77.9°
OABCAPCAKHAK251.2°45.7°
CAPNAVCALCAQ99.9°90.0°
CAPNAVCAUHAU90.7°101.8°
NAVCAPCAKHAK1113.8°102.0°
NAVCAPCAKHAK2123.2°134.4°
CAPNAVCALHAL1139.1°30.0°
CAPNAVCALHAL221.0°149.9°
NAVCALCAQHAL1121.0°120.0°
NAVCALCAQHAL2120.9°120.0°
NAVCALCAQCAG41.4°95.0°
NAVCALCAQNAM136.8°85.3°
CALNAVCAUHAU67.3°78.2°
NAVCALHAL1HAL2117.0°120.0°
CALCAQCAGNAM178.1°179.7°
CALCAQCAGCAE179.5°180.0°
CALCAQNAMCAF179.5°179.7°
CAQCALHAL1HAL2117.0°120.0°
CALCAQCAGHAG0.5°0.1°
CAQCAGCAEHAG180.0°179.9°
CAQCAGCAECAD2.0°0.1°
CAGCAQNAMCAF2.3°0.6°
CAGCAQCALHAL1162.3°25.0°
CAGCAQCALHAL279.6°145.0°
CAQCAGCAEHAE178.0°180.0°
NAMCAQCAGCAE2.4°0.3°
CAQNAMCAFCAD1.7°0.6°
NAMCAQCALHAL115.8°154.7°
NAMCAQCALHAL2102.3°34.7°
NAMCAQCAGHAG177.6°179.8°
CAQNAMCAFHAF178.3°179.8°
CAGCAECADHAE180.0°180.0°
CAGCAECADCAF1.4°0.1°
CAGCAECADHAD178.7°180.0°
CAECADCAFHAD180.0°179.9°
CAECADCAFNAM1.2°0.3°
CADCAECAGHAG178.0°180.0°
CAECADCAFHAF178.8°180.0°
CADCAFNAMHAF180.0°179.7°
CAFCADCAEHAE178.6°179.9°
NAMCAFCADHAD178.8°179.8°
HAA1CAAHAA2HAA3120.0°120.0°
HAHCAHCAIHAI0.7°0.1°
HAGCAGCAEHAE2.0°0.0°
HAECAECADHAD1.3°0.0°
HADCADCAFHAF1.2°0.1°

248636

PDB entries from 2026-02-04

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