5P5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C6	C1	sing	1.53Å	1.50Å
C1	O1	sing	1.43Å	1.38Å
C1	C2	sing	1.53Å	1.51Å
C1	H1	sing	1.09Å	1.10Å
O1	P1	sing	1.61Å	1.56Å
O13	P1	sing	1.61Å	1.55Å
P1	O12	doub	1.48Å	1.47Å
P1	O11	sing	1.61Å	1.48Å
C3	C2	sing	1.53Å	1.50Å
O2	C2	sing	1.43Å	1.38Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C4	C3	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.37Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C5	C4	sing	1.53Å	1.50Å
O4	C4	sing	1.43Å	1.37Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
O5	C5	sing	1.43Å	1.37Å
C5	C6	sing	1.53Å	1.52Å
C5	H5	sing	1.09Å	1.10Å
P5	O5	sing	1.61Å	1.52Å
O51	P5	doub	1.48Å	1.46Å
P5	O53	sing	1.61Å	1.44Å
P5	O52	sing	1.61Å	1.45Å
O6	C6	sing	1.43Å	1.39Å
C6	H6	sing	1.09Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å
C8	C7	sing	1.53Å	1.52Å
C7	O13	sing	1.43Å	1.42Å
C7	H7	sing	1.09Å	1.10Å
C7	H7A	sing	1.09Å	1.10Å
C9	C8	sing	1.53Å	1.51Å
C8	O14	sing	1.45Å	1.39Å
C8	H8	sing	1.09Å	1.10Å
O15	C9	sing	1.45Å	1.40Å
C9	H9	sing	1.09Å	1.10Å
C9	H9A	sing	1.09Å	1.10Å
O16	C10	doub	1.21Å	1.23Å
C10	C11	sing	1.51Å	1.49Å
C10	O15	sing	1.34Å	1.33Å
C12	C11	sing	1.53Å	1.48Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
O11	HO11	sing	0.97Å	0.95Å
C12	C13	sing	1.53Å	1.48Å
C12	H12	sing	1.09Å	1.10Å
C13	H13	sing	1.09Å	1.10Å
C13	H13A	sing	1.09Å	1.10Å
O17	C14	doub	1.21Å	1.21Å
O14	C14	sing	1.34Å	1.42Å
C14	C15	sing	1.51Å	1.50Å
C15	C16	sing	1.53Å	1.50Å
C15	H15	sing	1.09Å	1.10Å
C15	H15A	sing	1.09Å	1.10Å
C17	C16	sing	1.53Å	1.47Å
C16	H16	sing	1.09Å	1.10Å
C17	H17	sing	1.09Å	1.10Å
C17	H17A	sing	1.09Å	1.10Å
O52	HO52	sing	0.97Å	0.95Å
O53	HO53	sing	0.97Å	0.95Å
C12	H12A	sing	1.09Å	1.10Å
C13	H13B	sing	1.09Å	1.10Å
C16	H16A	sing	1.09Å	1.10Å
C17	H17B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C1	O1	109.2°	109.5°
C6	C1	C2	114.5°	109.4°
C6	C1	H1	106.0°	109.5°
C1	C6	C5	117.1°	109.5°
C1	C6	O6	108.2°	109.4°
C1	C6	H6	104.2°	109.5°
O1	C1	C2	109.0°	109.5°
O1	C1	H1	111.9°	109.4°
C1	O1	P1	118.2°	123.0°
C2	C1	H1	106.2°	109.5°
C1	C2	C3	114.5°	109.5°
C1	C2	O2	107.1°	109.5°
C1	C2	H2	108.5°	109.4°
O1	P1	O13	112.4°	109.5°
O1	P1	O12	110.9°	109.5°
O1	P1	O11	107.0°	109.5°
O13	P1	O12	114.4°	109.4°
O13	P1	O11	102.7°	109.5°
P1	O13	C7	125.5°	123.0°
O12	P1	O11	108.9°	109.5°
P1	O11	HO11	109.5°	114.0°
C3	C2	O2	111.6°	109.5°
C3	C2	H2	103.7°	109.5°
C2	C3	C4	115.0°	109.4°
C2	C3	O3	113.5°	109.5°
C2	C3	H3	102.8°	109.5°
O2	C2	H2	111.5°	109.5°
C2	O2	HO2	109.5°	114.0°
C4	C3	O3	110.8°	109.4°
C4	C3	H3	106.0°	109.5°
C3	C4	C5	114.9°	109.5°
C3	C4	O4	107.8°	109.4°
C3	C4	H4	106.7°	109.5°
O3	C3	H3	107.8°	109.4°
C3	O3	HO3	109.5°	114.0°
C5	C4	O4	108.7°	109.5°
C5	C4	H4	105.7°	109.5°
C4	C5	O5	111.8°	109.5°
C4	C5	C6	117.7°	109.4°
C4	C5	H5	102.4°	109.5°
O4	C4	H4	113.2°	109.5°
C4	O4	HO4	109.5°	114.0°
O5	C5	C6	111.9°	109.5°
O5	C5	H5	109.6°	109.5°
C5	O5	P5	115.3°	123.0°
C6	C5	H5	102.3°	109.5°
C5	C6	O6	106.5°	109.5°
C5	C6	H6	106.0°	109.5°
O5	P5	O51	109.0°	109.5°
O5	P5	O53	109.8°	109.4°
O5	P5	O52	105.2°	109.5°
O51	P5	O53	111.6°	109.5°
O51	P5	O52	109.0°	109.5°
O53	P5	O52	112.0°	109.5°
P5	O53	HO53	109.5°	113.9°
P5	O52	HO52	109.5°	114.0°
O6	C6	H6	115.2°	109.5°
C6	O6	HO6	109.5°	114.0°
C8	C7	O13	118.4°	109.5°
C8	C7	H7	106.6°	109.4°
C8	C7	H7A	106.6°	109.5°
C7	C8	C9	113.1°	109.5°
C7	C8	O14	109.1°	109.5°
C7	C8	H8	107.3°	109.4°
O13	C7	H7	106.6°	109.5°
O13	C7	H7A	106.6°	109.5°
H7	C7	H7A	112.2°	109.4°
C9	C8	O14	109.5°	109.5°
C9	C8	H8	106.9°	109.5°
C8	C9	O15	142.0°	109.4°
C8	C9	H9	99.8°	109.5°
C8	C9	H9A	99.7°	109.4°
O14	C8	H8	111.0°	109.5°
C8	O14	C14	122.0°	117.0°
O15	C9	H9	99.7°	109.5°
O15	C9	H9A	99.8°	109.5°
C9	O15	C10	121.9°	117.0°
H9	C9	H9A	117.2°	109.5°
O16	C10	C11	141.9°	120.0°
O16	C10	O15	142.4°	120.0°
C11	C10	O15	72.7°	120.0°
C10	C11	C12	118.5°	109.5°
C10	C11	H11	106.5°	109.5°
C10	C11	H11A	106.6°	109.5°
C12	C11	H11	106.6°	109.5°
C12	C11	H11A	106.6°	109.5°
C11	C12	C13	118.5°	109.5°
C11	C12	H12	106.6°	109.5°
C11	C12	H12A	106.6°	109.5°
H11	C11	H11A	112.2°	109.4°
C13	C12	H12	106.6°	109.5°
C12	C13	H13	109.5°	109.4°
C12	C13	H13A	109.5°	109.5°
C13	C12	H12A	106.6°	109.4°
C12	C13	H13B	109.5°	109.5°
H12	C12	H12A	112.2°	109.4°
H13	C13	H13A	109.5°	109.5°
H13	C13	H13B	109.5°	109.5°
H13A	C13	H13B	109.5°	109.5°
O17	C14	O14	121.0°	119.9°
O17	C14	C15	112.7°	120.1°
O14	C14	C15	118.4°	120.0°
C14	C15	C16	113.7°	109.4°
C14	C15	H15	108.0°	109.5°
C14	C15	H15A	108.1°	109.4°
C16	C15	H15	108.1°	109.5°
C16	C15	H15A	108.1°	109.5°
C15	C16	C17	115.9°	109.4°
C15	C16	H16	107.4°	109.4°
C15	C16	H16A	107.4°	109.5°
H15	C15	H15A	110.8°	109.5°
C17	C16	H16	107.4°	109.5°
C16	C17	H17	109.5°	109.5°
C16	C17	H17A	109.5°	109.5°
C17	C16	H16A	107.4°	109.5°
C16	C17	H17B	109.5°	109.4°
H16	C16	H16A	111.5°	109.5°
H17	C17	H17A	109.4°	109.5°
H17	C17	H17B	109.5°	109.4°
H17A	C17	H17B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C1	O1	C2	125.8°	120.0°
C6	C1	O1	H1	117.1°	120.0°
C6	C1	C2	H1	116.7°	120.0°
C6	C1	O1	P1	135.9°	120.0°
C6	C1	C2	C3	45.8°	60.0°
C6	C1	C2	O2	78.5°	60.0°
C6	C1	C2	H2	161.0°	180.0°
C1	C6	C5	C4	32.4°	60.0°
C1	C6	C5	O5	164.0°	180.0°
C1	C6	C5	O6	121.2°	120.0°
C1	C6	C5	H6	115.7°	120.0°
C1	C6	C5	H5	78.8°	60.0°
C1	C6	O6	H6	116.1°	120.0°
C1	C6	O6	HO6	180.0°	180.0°
O1	C1	C2	H1	120.7°	120.0°
C1	O1	P1	O13	142.7°	175.0°
C1	O1	P1	O12	13.3°	55.0°
C1	O1	P1	O11	105.3°	65.0°
O1	C1	C2	C3	168.4°	180.0°
O1	C1	C2	O2	44.1°	60.0°
O1	C1	C2	H2	76.4°	60.0°
O1	C1	C6	C5	160.5°	180.0°
O1	C1	C6	O6	79.2°	60.0°
O1	C1	C6	H6	43.9°	60.0°
C2	C1	O1	P1	98.4°	120.0°
C1	C2	C3	O2	121.8°	120.1°
C1	C2	C3	H2	118.0°	120.0°
C1	C2	O2	H2	118.6°	119.9°
C1	C2	O2	HO2	180.0°	180.0°
C1	C2	C3	C4	47.6°	60.0°
C1	C2	C3	O3	176.6°	180.0°
C1	C2	C3	H3	67.2°	60.0°
C2	C1	C6	C5	38.0°	60.0°
C2	C1	C6	O6	158.3°	180.0°
C2	C1	C6	H6	78.6°	60.0°
H1	C1	O1	P1	18.8°	0.0°
H1	C1	C2	C3	70.9°	60.0°
H1	C1	C2	O2	164.9°	180.0°
H1	C1	C2	H2	44.3°	60.0°
H1	C1	C6	C5	78.8°	60.0°
H1	C1	C6	O6	41.5°	60.0°
H1	C1	C6	H6	164.6°	180.0°
O1	P1	O13	O12	127.5°	120.0°
O1	P1	O13	O11	114.7°	120.0°
O1	P1	O12	O11	117.5°	120.0°
O1	P1	O13	C7	67.9°	175.0°
O1	P1	O11	HO11	119.9°	60.0°
O13	P1	O12	O11	114.2°	120.0°
P1	O13	C7	C8	119.2°	180.0°
P1	O13	C7	H7	120.8°	60.0°
P1	O13	C7	H7A	0.8°	60.0°
O13	P1	O11	HO11	121.6°	60.0°
O12	P1	O13	C7	59.6°	55.0°
O12	P1	O11	HO11	0.0°	179.9°
O11	P1	O13	C7	177.4°	65.0°
C3	C2	O2	H2	115.4°	120.0°
C3	C2	O2	HO2	54.0°	59.9°
C2	C3	C4	O3	130.4°	120.0°
C2	C3	C4	H3	112.9°	120.1°
C2	C3	O3	H3	113.2°	120.1°
C2	C3	O3	HO3	180.0°	180.0°
C2	C3	C4	C5	40.9°	60.0°
C2	C3	C4	O4	162.2°	180.0°
C2	C3	C4	H4	76.0°	60.0°
O2	C2	C3	C4	74.2°	60.0°
O2	C2	C3	O3	54.8°	59.9°
O2	C2	C3	H3	171.0°	180.0°
H2	C2	O2	HO2	61.4°	60.0°
H2	C2	C3	C4	165.6°	180.0°
H2	C2	C3	O3	65.4°	60.0°
H2	C2	C3	H3	50.8°	60.0°
C4	C3	O3	H3	115.6°	120.0°
C4	C3	O3	HO3	48.8°	60.0°
C3	C4	C5	O4	120.8°	120.0°
C3	C4	C5	H4	117.4°	120.0°
C3	C4	O4	H4	117.7°	120.0°
C3	C4	O4	HO4	180.0°	60.0°
C3	C4	C5	O5	164.7°	180.0°
C3	C4	C5	C6	33.2°	60.0°
C3	C4	C5	H5	78.0°	60.0°
O3	C3	C4	C5	171.3°	180.0°
O3	C3	C4	O4	67.4°	60.0°
O3	C3	C4	H4	54.5°	60.0°
H3	C3	O3	HO3	66.8°	60.0°
H3	C3	C4	C5	72.0°	60.0°
H3	C3	C4	O4	49.3°	59.9°
H3	C3	C4	H4	171.2°	179.9°
C5	C4	O4	H4	117.1°	120.1°
C5	C4	O4	HO4	54.9°	180.0°
C4	C5	O5	C6	134.5°	119.9°
C4	C5	O5	H5	112.8°	120.0°
C4	C5	C6	H5	111.2°	120.0°
C4	C5	O5	P5	105.3°	120.0°
C4	C5	C6	O6	153.6°	180.0°
C4	C5	C6	H6	83.2°	60.0°
O4	C4	C5	O5	74.4°	60.1°
O4	C4	C5	C6	154.0°	180.0°
O4	C4	C5	H5	42.8°	60.0°
H4	C4	O4	HO4	62.3°	59.9°
H4	C4	C5	O5	47.3°	60.0°
H4	C4	C5	C6	84.2°	60.0°
H4	C4	C5	H5	164.6°	180.0°
O5	C5	C6	H5	117.2°	120.1°
C5	O5	P5	O51	170.4°	55.0°
C5	O5	P5	O53	67.0°	175.0°
C5	O5	P5	O52	53.6°	65.0°
O5	C5	C6	O6	74.9°	60.1°
O5	C5	C6	H6	48.3°	60.0°
C6	C5	O5	P5	120.2°	120.0°
C5	C6	O6	H6	117.2°	120.0°
C5	C6	O6	HO6	53.3°	60.0°
H5	C5	O5	P5	7.4°	0.0°
H5	C5	C6	O6	42.4°	60.0°
H5	C5	C6	H6	165.6°	180.0°
O5	P5	O51	O53	121.4°	120.0°
O5	P5	O51	O52	114.3°	120.0°
O5	P5	O53	O52	116.4°	120.0°
O5	P5	O52	HO52	116.8°	60.0°
O5	P5	O53	HO53	121.0°	180.0°
O51	P5	O53	O52	122.6°	120.0°
O51	P5	O52	HO52	0.0°	180.0°
O51	P5	O53	HO53	0.0°	60.0°
O53	P5	O52	HO52	124.0°	60.0°
O52	P5	O53	HO53	122.5°	60.0°
H6	C6	O6	HO6	63.9°	60.0°
C8	C7	O13	H7	120.0°	120.0°
C8	C7	O13	H7A	120.0°	120.1°
C8	C7	H7	H7A	116.3°	120.0°
C7	C8	C9	O14	122.0°	120.0°
C7	C8	C9	H8	117.8°	119.9°
C7	C8	O14	H8	118.0°	120.0°
C7	C8	C9	O15	63.6°	175.0°
C7	C8	C9	H9	176.4°	55.0°
C7	C8	C9	H9A	56.4°	65.0°
C7	C8	O14	C14	70.0°	149.9°
O13	C7	H7	H7A	116.3°	120.0°
O13	C7	C8	C9	157.9°	175.0°
O13	C7	C8	O14	79.9°	65.0°
O13	C7	C8	H8	40.4°	55.0°
H7	C7	C8	C9	82.1°	65.0°
H7	C7	C8	O14	40.1°	55.0°
H7	C7	C8	H8	160.4°	175.1°
H7A	C7	C8	C9	37.9°	54.9°
H7A	C7	C8	O14	160.1°	175.0°
H7A	C7	C8	H8	79.7°	65.0°
C9	C8	O14	H8	117.7°	120.0°
C8	C9	O15	H9	120.0°	120.0°
C8	C9	O15	H9A	120.0°	119.9°
C8	C9	H9	H9A	106.4°	120.0°
C8	C9	O15	C10	134.1°	180.0°
C9	C8	O14	C14	54.3°	90.1°
O14	C8	C9	O15	58.4°	65.0°
O14	C8	C9	H9	61.6°	175.0°
O14	C8	C9	H9A	178.4°	55.0°
C8	O14	C14	O17	90.2°	0.1°
C8	O14	C14	C15	123.1°	180.0°
H8	C8	C9	O15	178.7°	55.1°
H8	C8	C9	H9	58.7°	65.0°
H8	C8	C9	H9A	61.3°	175.0°
H8	C8	O14	C14	172.0°	30.0°
O15	C9	H9	H9A	106.4°	120.1°
C9	O15	C10	O16	17.0°	0.0°
C9	O15	C10	C11	178.1°	180.0°
H9	C9	O15	C10	14.1°	60.0°
H9A	C9	O15	C10	105.9°	60.1°
O16	C10	C11	O15	161.3°	180.0°
O16	C10	C11	C12	29.5°	0.0°
O16	C10	C11	H11	149.5°	120.0°
O16	C10	C11	H11A	90.5°	120.0°
C10	C11	C12	H11	120.0°	120.1°
C10	C11	C12	H11A	120.0°	120.0°
C10	C11	H11	H11A	116.3°	120.0°
C10	C11	C12	C13	138.3°	180.0°
C10	C11	C12	H12	18.3°	59.9°
C10	C11	C12	H12A	101.7°	60.0°
O15	C10	C11	C12	131.8°	180.0°
O15	C10	C11	H11	11.9°	60.0°
O15	C10	C11	H11A	108.2°	60.0°
C12	C11	H11	H11A	116.3°	120.0°
C11	C12	C13	H12	120.0°	120.0°
C11	C12	C13	H12A	120.0°	120.0°
C11	C12	H12	H12A	116.3°	120.0°
C11	C12	C13	H13	180.0°	60.0°
C11	C12	C13	H13A	60.0°	180.0°
C11	C12	C13	H13B	60.0°	60.0°
H11	C11	C12	C13	101.7°	59.9°
H11	C11	C12	H12	138.3°	NaN°
H11	C11	C12	H12A	18.3°	60.0°
H11A	C11	C12	C13	18.3°	60.0°
H11A	C11	C12	H12	101.6°	60.0°
H11A	C11	C12	H12A	138.3°	180.0°
C13	C12	H12	H12A	116.3°	120.0°
C12	C13	H13	H13A	120.0°	120.0°
C12	C13	H13	H13B	120.0°	120.0°
C12	C13	H13A	H13B	120.0°	120.0°
H12	C12	C13	H13	60.0°	60.0°
H12	C12	C13	H13A	180.0°	59.9°
H12	C12	C13	H13B	60.0°	180.0°
H13	C13	H13A	H13B	120.0°	120.0°
H13	C13	C12	H12A	60.0°	180.0°
H13A	C13	C12	H12A	60.0°	60.0°
O17	C14	O14	C15	146.7°	179.9°
O17	C14	C15	C16	15.4°	0.0°
O17	C14	C15	H15	104.6°	120.0°
O17	C14	C15	H15A	135.4°	120.0°
O14	C14	C15	C16	133.9°	179.9°
O14	C14	C15	H15	106.1°	59.9°
O14	C14	C15	H15A	13.9°	60.1°
C14	C15	C16	H15	120.0°	120.0°
C14	C15	C16	H15A	120.0°	119.9°
C14	C15	H15	H15A	118.2°	120.0°
C14	C15	C16	C17	62.4°	179.9°
C14	C15	C16	H16	57.6°	60.0°
C14	C15	C16	H16A	177.6°	60.0°
C16	C15	H15	H15A	118.3°	120.0°
C15	C16	C17	H16	120.0°	119.9°
C15	C16	C17	H16A	120.0°	120.0°
C15	C16	H16	H16A	117.4°	120.0°
C15	C16	C17	H17	180.0°	60.1°
C15	C16	C17	H17A	60.0°	60.0°
C15	C16	C17	H17B	60.0°	180.0°
H15	C15	C16	C17	177.6°	60.0°
H15	C15	C16	H16	62.4°	180.0°
H15	C15	C16	H16A	57.6°	60.0°
H15A	C15	C16	C17	57.6°	60.0°
H15A	C15	C16	H16	177.6°	59.9°
H15A	C15	C16	H16A	62.4°	179.9°
C17	C16	H16	H16A	117.4°	120.0°
C16	C17	H17	H17A	120.0°	120.1°
C16	C17	H17	H17B	120.0°	119.9°
C16	C17	H17A	H17B	120.0°	120.0°
H16	C16	C17	H17	60.0°	180.0°
H16	C16	C17	H17A	180.0°	59.9°
H16	C16	C17	H17B	60.0°	60.1°
H17	C17	H17A	H17B	120.0°	120.0°
H17	C17	C16	H16A	60.0°	60.0°
H17A	C17	C16	H16A	59.9°	179.9°
H12A	C12	C13	H13B	180.0°	60.0°
H16A	C16	C17	H17B	179.9°	60.0°

Definition date:	2011-04-20
Last modified:	2011-07-01
Release status:	REL
Processing site:	RCSB
Derived from:	3RGQ