5OY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OAE | PAL | doub | 1.48Å | 1.53Å | |
| OAC | PAL | sing | 1.61Å | 1.52Å | |
| PAL | OAF | sing | 1.61Å | 1.52Å | |
| PAL | CAI | sing | 1.82Å | 1.95Å | |
| CAI | CAG | sing | 1.53Å | 1.53Å | |
| CAG | CB | sing | 1.53Å | 1.56Å | |
| N | CA | sing | 1.47Å | 1.54Å | |
| CB | CA | sing | 1.53Å | 1.51Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| C | OXT | doub | 1.21Å | 1.30Å | |
| C | O | sing | 1.34Å | 1.28Å | |
| OAC | H1 | sing | 0.97Å | 0.95Å | |
| OAF | H2 | sing | 0.97Å | 0.95Å | |
| CAI | H3 | sing | 1.09Å | 1.10Å | |
| CAI | H4 | sing | 1.09Å | 1.10Å | |
| CAG | H5 | sing | 1.09Å | 1.10Å | |
| CAG | H12 | sing | 1.09Å | 1.10Å | |
| CB | H6 | sing | 1.09Å | 1.10Å | |
| CB | H13 | sing | 1.09Å | 1.10Å | |
| CA | H7 | sing | 1.09Å | 1.10Å | |
| N | H8 | sing | 1.01Å | 1.00Å | |
| N | H9 | sing | 1.01Å | 1.00Å | |
| O | H11 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OAE | PAL | OAC | 111.0° | 109.5° |
| OAE | PAL | OAF | 113.4° | 109.5° |
| OAE | PAL | CAI | 105.3° | 109.5° |
| OAC | PAL | OAF | 113.5° | 109.5° |
| OAC | PAL | CAI | 108.7° | 109.4° |
| PAL | OAC | H1 | 109.5° | 114.0° |
| OAF | PAL | CAI | 104.2° | 109.5° |
| PAL | OAF | H2 | 109.5° | 114.0° |
| PAL | CAI | CAG | 114.0° | 109.5° |
| PAL | CAI | H3 | 108.3° | 109.4° |
| PAL | CAI | H4 | 108.3° | 109.5° |
| CAI | CAG | CB | 116.9° | 109.4° |
| CAG | CAI | H3 | 108.3° | 109.5° |
| CAG | CAI | H4 | 108.3° | 109.5° |
| CAI | CAG | H5 | 107.6° | 109.5° |
| CAI | CAG | H12 | 107.6° | 109.5° |
| CAG | CB | CA | 115.0° | 109.5° |
| CB | CAG | H5 | 107.6° | 109.4° |
| CB | CAG | H12 | 107.6° | 109.5° |
| CAG | CB | H6 | 108.1° | 109.5° |
| CAG | CB | H13 | 108.1° | 109.5° |
| N | CA | CB | 109.9° | 109.5° |
| N | CA | C | 110.8° | 109.5° |
| N | CA | H7 | 108.8° | 109.4° |
| CA | N | H8 | 109.5° | 111.0° |
| CA | N | H9 | 109.5° | 111.0° |
| CB | CA | C | 109.2° | 109.5° |
| CA | CB | H6 | 108.1° | 109.4° |
| CA | CB | H13 | 108.1° | 109.4° |
| CB | CA | H7 | 109.1° | 109.5° |
| CA | C | OXT | 122.7° | 120.0° |
| CA | C | O | 121.3° | 120.0° |
| C | CA | H7 | 109.0° | 109.5° |
| OXT | C | O | 115.9° | 120.1° |
| C | O | H11 | 109.5° | 117.0° |
| H3 | CAI | H4 | 109.5° | 109.4° |
| H5 | CAG | H12 | 109.5° | 109.5° |
| H6 | CB | H13 | 109.5° | 109.5° |
| H8 | N | H9 | 109.4° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OAE | PAL | OAC | OAF | 129.2° | 120.0° |
| OAE | PAL | OAC | CAI | 115.4° | 120.0° |
| OAE | PAL | OAF | CAI | 114.0° | 120.0° |
| OAE | PAL | CAI | CAG | 43.1° | 54.9° |
| OAE | PAL | OAC | H1 | 0.0° | 180.0° |
| OAE | PAL | OAF | H2 | 0.0° | 60.0° |
| OAE | PAL | CAI | H3 | 77.5° | 65.1° |
| OAE | PAL | CAI | H4 | 163.8° | 175.0° |
| OAC | PAL | OAF | CAI | 118.1° | 120.0° |
| OAC | PAL | CAI | CAG | 162.1° | 65.0° |
| OAC | PAL | OAF | H2 | 127.9° | 60.0° |
| OAC | PAL | CAI | H3 | 41.5° | 175.0° |
| OAC | PAL | CAI | H4 | 77.2° | 55.0° |
| OAF | PAL | CAI | CAG | 76.5° | 175.0° |
| OAF | PAL | OAC | H1 | 129.2° | 60.0° |
| OAF | PAL | CAI | H3 | 162.8° | 55.0° |
| OAF | PAL | CAI | H4 | 44.1° | 65.0° |
| PAL | CAI | CAG | H3 | 120.7° | 120.0° |
| PAL | CAI | CAG | H4 | 120.6° | 120.0° |
| PAL | CAI | CAG | CB | 174.6° | 180.0° |
| CAI | PAL | OAC | H1 | 115.4° | 60.0° |
| CAI | PAL | OAF | H2 | 114.0° | 179.9° |
| PAL | CAI | H3 | H4 | 118.0° | 119.9° |
| PAL | CAI | CAG | H5 | 53.5° | 60.1° |
| PAL | CAI | CAG | H12 | 64.4° | 59.9° |
| CAI | CAG | CB | H5 | 121.1° | 120.0° |
| CAI | CAG | CB | H12 | 121.1° | 120.0° |
| CAI | CAG | CB | CA | 57.2° | 180.0° |
| CAG | CAI | H3 | H4 | 118.0° | 120.0° |
| CAI | CAG | H5 | H12 | 116.6° | 120.0° |
| CAI | CAG | CB | H6 | 63.6° | 60.1° |
| CAI | CAG | CB | H13 | 178.0° | 60.0° |
| CAG | CB | CA | N | 84.7° | 65.0° |
| CAG | CB | CA | H6 | 120.8° | 120.0° |
| CAG | CB | CA | H13 | 120.8° | 120.0° |
| CAG | CB | CA | C | 153.6° | 175.0° |
| CB | CAG | CAI | H3 | 64.7° | 60.0° |
| CB | CAG | CAI | H4 | 53.9° | 60.0° |
| CB | CAG | H5 | H12 | 116.6° | 120.1° |
| CAG | CB | H6 | H13 | 117.5° | 120.1° |
| CAG | CB | CA | H7 | 34.5° | 54.9° |
| N | CA | CB | C | 121.7° | 120.0° |
| N | CA | CB | H7 | 119.2° | 119.9° |
| N | CA | C | H7 | 119.6° | 119.9° |
| N | CA | C | OXT | 178.5° | 20.0° |
| N | CA | C | O | 3.3° | 160.0° |
| N | CA | CB | H6 | 154.5° | 175.0° |
| N | CA | CB | H13 | 36.1° | 55.0° |
| CA | N | H8 | H9 | 120.0° | 123.9° |
| CB | CA | C | H7 | 119.2° | 120.0° |
| CB | CA | C | OXT | 60.3° | 100.0° |
| CB | CA | C | O | 117.9° | 80.0° |
| CA | CB | CAG | H5 | 178.3° | 60.0° |
| CA | CB | CAG | H12 | 63.8° | 60.0° |
| CA | CB | H6 | H13 | 117.5° | 119.9° |
| CB | CA | N | H8 | 180.0° | 60.0° |
| CB | CA | N | H9 | 60.0° | 63.9° |
| CA | C | OXT | O | 178.3° | 180.0° |
| C | CA | CB | H6 | 32.8° | 55.0° |
| C | CA | CB | H13 | 85.6° | 65.0° |
| C | CA | N | H8 | 59.2° | 60.0° |
| C | CA | N | H9 | 60.8° | 176.0° |
| CA | C | O | H11 | 178.3° | 180.0° |
| OXT | C | CA | H7 | 58.9° | 140.0° |
| OXT | C | O | H11 | 0.0° | 0.1° |
| O | C | CA | H7 | 123.0° | 40.0° |
| H3 | CAI | CAG | H5 | 174.2° | 180.0° |
| H3 | CAI | CAG | H12 | 56.3° | 60.0° |
| H4 | CAI | CAG | H5 | 67.1° | 60.0° |
| H4 | CAI | CAG | H12 | 175.0° | 180.0° |
| H5 | CAG | CB | H6 | 57.5° | 180.0° |
| H5 | CAG | CB | H13 | 60.9° | 59.9° |
| H12 | CAG | CB | H6 | 175.4° | 60.0° |
| H12 | CAG | CB | H13 | 57.0° | 180.0° |
| H6 | CB | CA | H7 | 86.3° | 65.1° |
| H13 | CB | CA | H7 | 155.3° | 175.0° |
| H7 | CA | N | H8 | 60.6° | 180.0° |
| H7 | CA | N | H9 | 179.5° | 56.0° |
