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SummaryGeometryRelated PDB entries

5OM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C30O32sing1.43Å1.43Å
C30C31sing1.53Å1.42Å
C30C02sing1.53Å1.54Å
O01C02sing1.43Å1.40Å
O32C31sing1.43Å1.46Å
C02C03sing1.53Å1.54Å
C02O02sing1.43Å1.43Å
C03C04sing1.53Å1.53Å
COdoub1.21Å1.22Å
CCAsing1.51Å1.52Å
C04C05sing1.53Å1.55Å
C05C06sing1.53Å1.56Å
C06C07sing1.53Å1.55Å
C07CAsing1.53Å1.53Å
CANsing1.47Å1.42Å
COXTsing1.34Å1.46Å
O01H1sing0.97Å0.95Å
C03H20sing1.09Å1.10Å
C03H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C05H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
C06H9sing1.09Å1.10Å
C07H10sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
CAHAsing1.09Å1.10Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
O02H16sing0.97Å0.95Å
C30H17sing1.09Å1.10Å
C31H18sing1.09Å1.10Å
C31H19sing1.09Å1.10Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O32C30C3161.5°57.6°
O32C30C02112.2°117.7°
C30O32C3159.1°64.8°
O32C30H17120.0°117.8°
C31C30C02113.0°117.8°
C30C31O3259.4°57.6°
C31C30H17120.2°117.8°
C30C31H18120.1°117.7°
C30C31H19120.1°117.7°
C30C02O01106.2°109.5°
C30C02C03102.8°109.5°
C30C02O02115.1°109.5°
C02C30H17117.7°115.8°
O01C02C03111.9°109.5°
O01C02O02111.0°109.5°
C02O01H1109.5°114.0°
O32C31H18120.1°117.8°
O32C31H19120.1°117.8°
C03C02O02109.6°109.5°
C02C03C04112.9°109.5°
C02C03H20108.6°109.5°
C02C03H3108.6°109.5°
C02O02H16109.5°114.0°
C03C04C05110.2°109.5°
C04C03H20108.6°109.4°
C04C03H3108.6°109.5°
C03C04H4109.3°109.5°
C03C04H5109.3°109.5°
OCCA118.0°120.0°
OCOXT117.3°120.0°
CCAC07108.2°109.5°
CCAN117.7°109.5°
CACOXT124.6°120.0°
CCAHA107.7°109.5°
C04C05C06112.5°109.5°
C05C04H4109.3°109.4°
C05C04H5109.3°109.5°
C04C05H6108.7°109.4°
C04C05H7108.7°109.5°
C05C06C07109.4°109.5°
C06C05H6108.7°109.5°
C06C05H7108.7°109.5°
C05C06H8109.5°109.5°
C05C06H9109.5°109.5°
C06C07CA112.2°109.5°
C07C06H8109.5°109.4°
C07C06H9109.5°109.5°
C06C07H10108.8°109.4°
C06C07H11108.8°109.5°
C07CAN106.4°109.5°
CAC07H10108.8°109.5°
CAC07H11108.8°109.5°
C07CAHA107.5°109.5°
NCAHA108.9°109.5°
CANH109.5°111.0°
CANH2109.5°111.0°
COXTHXT109.5°117.0°
H20C03H3109.5°109.5°
H4C04H5109.5°109.5°
H6C05H7109.5°109.5°
H8C06H9109.5°109.5°
H10C07H11109.5°109.5°
HNH2109.4°111.0°
H18C31H19109.5°115.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O32C30C31C02103.7°106.8°
O32C30C31H17110.1°106.8°
O32C30C02H17145.6°146.9°
O32C30C02O01103.2°133.6°
O32C30C02C03139.1°106.4°
O32C30C02O0220.0°13.6°
O32C30C31H18109.3°106.9°
O32C30C31H19109.3°106.9°
C31C30C02H17147.1°147.1°
C31C30C02O01170.4°67.6°
C31C30C02C0371.9°172.4°
C31C30C02O0247.2°52.4°
C30C31H18H19145.1°146.8°
C30C02O01C03111.5°120.0°
C30C02O01O02125.7°120.0°
C30C02C03O02122.8°120.0°
C30C02C03C04177.5°180.0°
C30C02O01H1180.0°60.0°
C30C02C03H2057.0°60.0°
C30C02C03H362.0°60.0°
C30C02O02H16180.0°60.0°
C02C30C31H185.6°0.1°
C02C30C31H19147.0°146.3°
O01C02C03O02123.6°120.0°
O01C02C03C0463.9°60.0°
O01C02C03H2056.6°180.0°
O01C02C03H3175.6°60.0°
O01C02O02H1659.4°180.0°
O01C02C30H1742.4°79.4°
O32C31H18H19145.0°147.1°
C02C03C04H20120.5°120.0°
C02C03C04H3120.5°120.0°
C02C03C04C05178.3°180.0°
C03C02O01H168.5°60.0°
C02C03H20H3118.4°120.0°
C02C03C04H461.6°60.0°
C02C03C04H558.2°60.0°
C03C02O02H1664.8°60.1°
C03C02C30H1775.3°40.5°
O02C02C03C0459.6°60.0°
O02C02O01H154.2°179.9°
O02C02C03H20179.8°60.0°
O02C02C03H360.9°180.0°
O02C02C30H17165.6°160.6°
C03C04C05H4120.1°120.0°
C03C04C05H5120.1°120.0°
C03C04C05C06162.0°180.0°
C04C03H20H3118.4°120.0°
C03C04H4H5119.6°120.0°
C03C04C05H641.5°60.0°
C03C04C05H777.5°60.0°
OCCAOXT178.2°179.9°
OCCAC0798.0°100.0°
OCCAN141.5°20.0°
OCCAHA18.0°140.0°
OCOXTHXT0.0°0.1°
CCAC07C0666.0°175.0°
CCAC07N127.4°120.0°
CCAC07HA116.1°120.0°
CCANHA122.8°120.0°
CCAC07H1054.4°55.0°
CCAC07H11173.6°65.0°
CCANH180.0°63.9°
CCANH260.0°60.0°
CACOXTHXT178.2°180.0°
C04C05C06H6120.5°120.0°
C04C05C06H7120.5°120.0°
C04C05C06C07175.1°180.0°
C05C04C03H2057.8°60.0°
C05C04C03H361.2°60.0°
C05C04H4H5119.7°120.0°
C04C05H6H7118.6°120.0°
C04C05C06H855.1°60.0°
C04C05C06H964.9°60.0°
C05C06C07H8120.0°120.0°
C05C06C07H9120.0°120.0°
C05C06C07CA177.7°180.0°
C06C05C04H477.9°60.0°
C06C05C04H541.9°60.0°
C06C05H6H7118.6°120.0°
C05C06H8H9120.0°120.0°
C05C06C07H1061.9°60.0°
C05C06C07H1157.3°60.0°
C06C07CAH10120.4°120.0°
C06C07CAH11120.4°120.0°
C06C07CAN166.6°65.0°
C07C06C05H664.4°60.0°
C07C06C05H754.6°60.0°
C07C06H8H9120.1°120.0°
C06C07H10H11118.7°120.0°
C06C07CAHA50.0°55.0°
C07CANHA115.7°120.0°
C07CACOXT80.2°80.1°
CAC07C06H857.7°60.0°
CAC07C06H962.3°60.0°
CAC07H10H11118.8°120.0°
C07CANH58.5°176.1°
C07CANH2178.5°60.0°
NCACOXT40.3°159.9°
NCAC07H1073.0°175.0°
NCAC07H1146.2°55.0°
CANHH2120.0°123.9°
OXTCCAHA163.8°39.9°
H20C03C04H4177.9°180.0°
H20C03C04H562.3°60.0°
H3C03C04H458.9°60.0°
H3C03C04H5178.7°180.0°
H4C04C05H6161.6°180.0°
H4C04C05H742.6°60.0°
H5C04C05H678.6°60.0°
H5C04C05H7162.4°180.0°
H6C05C06H8175.6°180.0°
H6C05C06H955.6°60.0°
H7C05C06H865.4°60.0°
H7C05C06H9174.6°180.0°
H8C06C07H10178.1°180.0°
H8C06C07H1162.7°60.0°
H9C06C07H1058.1°60.0°
H9C06C07H11177.2°180.0°
H10C07CAHA170.5°65.0°
H11C07CAHA70.4°175.0°
HACANH57.1°56.1°
HACANH262.8°180.0°
H17C30C31H18140.6°146.3°
H17C30C31H190.8°0.1°

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PDB entries from 2024-07-17

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