5OL
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.43Å | |
CA | C03 | sing | 1.53Å | 1.51Å | |
CA | C | sing | 1.51Å | 1.51Å | |
C03 | C04 | sing | 1.53Å | 1.52Å | |
C05 | C04 | sing | 1.53Å | 1.52Å | |
C05 | C06 | sing | 1.53Å | 1.52Å | |
C | O | doub | 1.21Å | 1.27Å | |
N07 | C06 | sing | 1.47Å | 1.43Å | |
N07 | C08 | sing | 1.47Å | 1.43Å | |
O01 | C08 | sing | 1.43Å | 1.41Å | |
C08 | C11 | sing | 1.53Å | 1.51Å | |
C08 | O02 | sing | 1.43Å | 1.42Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
N | H | sing | 1.01Å | 1.00Å | |
C03 | H5 | sing | 1.09Å | 1.10Å | |
C03 | H6 | sing | 1.09Å | 1.10Å | |
C04 | H7 | sing | 1.09Å | 1.10Å | |
C04 | H8 | sing | 1.09Å | 1.10Å | |
C05 | H9 | sing | 1.09Å | 1.10Å | |
C05 | H10 | sing | 1.09Å | 1.10Å | |
C06 | H11 | sing | 1.09Å | 1.10Å | |
C06 | H12 | sing | 1.09Å | 1.10Å | |
N07 | H13 | sing | 1.01Å | 1.00Å | |
O02 | H15 | sing | 0.97Å | 0.95Å | |
O01 | H16 | sing | 0.97Å | 0.95Å | |
C11 | H17 | sing | 1.09Å | 1.10Å | |
C11 | H18 | sing | 1.09Å | 1.10Å | |
C11 | H19 | sing | 1.09Å | 1.10Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | CA | C03 | 110.6° | 109.5° |
N | CA | C | 109.0° | 109.5° |
N | CA | HA | 109.6° | 109.5° |
CA | N | H2 | 109.5° | 111.0° |
CA | N | H | 109.5° | 111.0° |
C03 | CA | C | 110.5° | 109.5° |
CA | C03 | C04 | 112.9° | 109.5° |
C03 | CA | HA | 108.5° | 109.5° |
CA | C03 | H5 | 108.6° | 109.5° |
CA | C03 | H6 | 108.6° | 109.5° |
CA | C | O | 118.8° | 120.0° |
CA | C | OXT | 115.5° | 120.0° |
C | CA | HA | 108.6° | 109.5° |
C03 | C04 | C05 | 112.3° | 109.5° |
C04 | C03 | H5 | 108.6° | 109.5° |
C04 | C03 | H6 | 108.6° | 109.5° |
C03 | C04 | H7 | 108.7° | 109.4° |
C03 | C04 | H8 | 108.8° | 109.5° |
C04 | C05 | C06 | 115.8° | 109.4° |
C05 | C04 | H7 | 108.8° | 109.5° |
C05 | C04 | H8 | 108.8° | 109.5° |
C04 | C05 | H9 | 107.9° | 109.5° |
C04 | C05 | H10 | 107.9° | 109.5° |
C05 | C06 | N07 | 109.8° | 109.4° |
C06 | C05 | H9 | 107.9° | 109.4° |
C06 | C05 | H10 | 107.9° | 109.5° |
C05 | C06 | H11 | 109.4° | 109.5° |
C05 | C06 | H12 | 109.4° | 109.5° |
O | C | OXT | 125.6° | 120.0° |
C06 | N07 | C08 | 115.1° | 111.0° |
N07 | C06 | H11 | 109.4° | 109.4° |
N07 | C06 | H12 | 109.4° | 109.5° |
C06 | N07 | H13 | 108.1° | 111.0° |
N07 | C08 | O01 | 108.9° | 109.5° |
N07 | C08 | C11 | 105.7° | 109.5° |
N07 | C08 | O02 | 113.2° | 109.4° |
C08 | N07 | H13 | 108.0° | 111.0° |
O01 | C08 | C11 | 109.5° | 109.5° |
O01 | C08 | O02 | 110.9° | 109.5° |
C08 | O01 | H16 | 109.5° | 114.0° |
C11 | C08 | O02 | 108.5° | 109.5° |
C08 | C11 | H17 | 109.5° | 109.5° |
C08 | C11 | H18 | 109.5° | 109.4° |
C08 | C11 | H19 | 109.5° | 109.5° |
C08 | O02 | H15 | 109.5° | 114.0° |
C | OXT | HXT | 109.5° | 117.0° |
H2 | N | H | 109.4° | 111.0° |
H5 | C03 | H6 | 109.5° | 109.4° |
H7 | C04 | H8 | 109.5° | 109.5° |
H9 | C05 | H10 | 109.5° | 109.5° |
H11 | C06 | H12 | 109.5° | 109.5° |
H17 | C11 | H18 | 109.5° | 109.5° |
H17 | C11 | H19 | 109.4° | 109.5° |
H18 | C11 | H19 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | CA | C03 | C | 120.8° | 120.0° |
N | CA | C03 | HA | 120.2° | 120.0° |
N | CA | C | HA | 119.3° | 120.0° |
N | CA | C03 | C04 | 177.8° | 65.0° |
N | CA | C | O | 142.4° | 20.0° |
N | CA | C | OXT | 36.9° | 160.0° |
CA | N | H2 | H | 120.0° | 124.0° |
N | CA | C03 | H5 | 57.3° | 55.0° |
N | CA | C03 | H6 | 61.7° | 175.0° |
C03 | CA | C | HA | 119.0° | 120.0° |
CA | C03 | C04 | H5 | 120.5° | 120.0° |
CA | C03 | C04 | H6 | 120.5° | 120.0° |
CA | C03 | C04 | C05 | 172.1° | 180.0° |
C03 | CA | C | O | 95.9° | 100.0° |
C03 | CA | C | OXT | 84.8° | 80.0° |
C03 | CA | N | H2 | 180.0° | 60.0° |
C03 | CA | N | H | 60.0° | 64.0° |
CA | C03 | H5 | H6 | 118.4° | 120.0° |
CA | C03 | C04 | H7 | 67.5° | 60.0° |
CA | C03 | C04 | H8 | 51.7° | 59.9° |
C | CA | C03 | C04 | 61.4° | 175.0° |
CA | C | O | OXT | 179.2° | 180.0° |
C | CA | N | H2 | 58.3° | 59.9° |
C | CA | N | H | 61.7° | 176.0° |
C | CA | C03 | H5 | 178.1° | 65.0° |
C | CA | C03 | H6 | 59.1° | 55.0° |
CA | C | OXT | HXT | 179.2° | 179.9° |
C03 | C04 | C05 | H7 | 120.4° | 120.0° |
C03 | C04 | C05 | H8 | 120.4° | 120.0° |
C03 | C04 | C05 | C06 | 179.8° | 180.0° |
C04 | C03 | CA | HA | 57.6° | 55.0° |
C04 | C03 | H5 | H6 | 118.4° | 120.0° |
C03 | C04 | H7 | H8 | 118.7° | 119.9° |
C03 | C04 | C05 | H9 | 58.9° | 60.1° |
C03 | C04 | C05 | H10 | 59.3° | 60.0° |
C04 | C05 | C06 | H9 | 120.9° | 120.0° |
C04 | C05 | C06 | H10 | 120.9° | 120.0° |
C04 | C05 | C06 | N07 | 171.6° | 180.0° |
C05 | C04 | C03 | H5 | 51.6° | 60.0° |
C05 | C04 | C03 | H6 | 67.4° | 60.0° |
C05 | C04 | H7 | H8 | 118.7° | 120.1° |
C04 | C05 | H9 | H10 | 117.1° | 120.1° |
C04 | C05 | C06 | H11 | 51.5° | 60.0° |
C04 | C05 | C06 | H12 | 68.4° | 60.0° |
C05 | C06 | N07 | H11 | 120.0° | 120.0° |
C05 | C06 | N07 | H12 | 120.1° | 120.0° |
C05 | C06 | N07 | C08 | 172.6° | 180.0° |
C06 | C05 | C04 | H7 | 59.8° | 60.0° |
C06 | C05 | C04 | H8 | 59.4° | 60.0° |
C06 | C05 | H9 | H10 | 117.1° | 120.0° |
C05 | C06 | H11 | H12 | 119.9° | 120.0° |
C05 | C06 | N07 | H13 | 51.8° | 56.1° |
O | C | CA | HA | 23.1° | 140.0° |
O | C | OXT | HXT | 0.0° | 0.1° |
C06 | N07 | C08 | H13 | 120.9° | 123.9° |
C06 | N07 | C08 | O01 | 75.3° | 60.0° |
C06 | N07 | C08 | C11 | 167.2° | 180.0° |
C06 | N07 | C08 | O02 | 48.5° | 60.0° |
N07 | C06 | C05 | H9 | 67.5° | 60.0° |
N07 | C06 | C05 | H10 | 50.7° | 60.0° |
N07 | C06 | H11 | H12 | 119.8° | 120.0° |
N07 | C08 | O01 | C11 | 115.1° | 120.0° |
N07 | C08 | O01 | O02 | 125.2° | 120.0° |
N07 | C08 | C11 | O02 | 121.7° | 120.0° |
C08 | N07 | C06 | H11 | 67.3° | 60.0° |
C08 | N07 | C06 | H12 | 52.6° | 60.0° |
N07 | C08 | O02 | H15 | 180.0° | 60.0° |
N07 | C08 | O01 | H16 | 180.0° | 60.0° |
N07 | C08 | C11 | H17 | 180.0° | 60.0° |
N07 | C08 | C11 | H18 | 60.0° | 180.0° |
N07 | C08 | C11 | H19 | 60.0° | 60.0° |
O01 | C08 | C11 | O02 | 121.1° | 120.0° |
O01 | C08 | N07 | H13 | 45.6° | 63.9° |
O01 | C08 | O02 | H15 | 57.3° | 180.0° |
O01 | C08 | C11 | H17 | 62.9° | 180.0° |
O01 | C08 | C11 | H18 | 57.1° | 60.0° |
O01 | C08 | C11 | H19 | 177.1° | 60.0° |
C11 | C08 | N07 | H13 | 72.0° | 56.0° |
C11 | C08 | O02 | H15 | 63.0° | 60.0° |
C11 | C08 | O01 | H16 | 64.9° | 60.0° |
C08 | C11 | H17 | H18 | 120.0° | 119.9° |
C08 | C11 | H17 | H19 | 120.0° | 120.1° |
C08 | C11 | H18 | H19 | 120.0° | 120.0° |
O02 | C08 | N07 | H13 | 169.4° | 176.1° |
O02 | C08 | O01 | H16 | 54.8° | 180.0° |
O02 | C08 | C11 | H17 | 58.3° | 59.9° |
O02 | C08 | C11 | H18 | 178.3° | 60.0° |
O02 | C08 | C11 | H19 | 61.7° | 180.0° |
OXT | C | CA | HA | 156.2° | 40.0° |
HA | CA | N | H2 | 60.4° | 180.0° |
HA | CA | N | H | 179.6° | 56.0° |
HA | CA | C03 | H5 | 62.9° | 175.0° |
HA | CA | C03 | H6 | 178.1° | 65.0° |
H5 | C03 | C04 | H7 | 172.0° | 180.0° |
H5 | C03 | C04 | H8 | 68.8° | 60.0° |
H6 | C03 | C04 | H7 | 53.0° | 60.0° |
H6 | C03 | C04 | H8 | 172.2° | 180.0° |
H7 | C04 | C05 | H9 | 179.3° | 180.0° |
H7 | C04 | C05 | H10 | 61.1° | 60.0° |
H8 | C04 | C05 | H9 | 61.5° | 60.0° |
H8 | C04 | C05 | H10 | 179.7° | 180.0° |
H9 | C05 | C06 | H11 | 172.5° | 180.0° |
H9 | C05 | C06 | H12 | 52.5° | 60.0° |
H10 | C05 | C06 | H11 | 69.4° | 60.0° |
H10 | C05 | C06 | H12 | 170.7° | 179.9° |
H11 | C06 | N07 | H13 | 171.8° | 176.1° |
H12 | C06 | N07 | H13 | 68.3° | 63.9° |
H17 | C11 | H18 | H19 | 120.0° | 120.0° |