5OC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O5'	sing	1.61Å	1.59Å
P	OP3	doub	1.48Å	1.48Å
N1	C6	sing	1.37Å	1.37Å
N1	C2	sing	1.35Å	1.40Å
C2	N3	sing	1.33Å	1.35Å
O2	C2	doub	1.22Å	1.24Å
N3	C4	doub	1.33Å	1.34Å
C4	N4	sing	1.38Å	1.33Å
N4	HN4	sing	0.97Å	1.00Å
N4	HN4A	sing	0.97Å	1.00Å
C5	C4	sing	1.41Å	1.43Å
C5	O5	sing	1.36Å	1.32Å
C6	C5	doub	1.36Å	1.34Å
C6	H6	sing	1.08Å	1.08Å
C1'	N1	sing	1.46Å	1.47Å
C1'	C2'	sing	1.54Å	1.53Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	C3'	sing	1.55Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.43Å
O4'	C4'	sing	1.44Å	1.44Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	O5'	sing	1.43Å	1.44Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
OP1	P	sing	1.61Å	1.48Å
OP1	HOP1	sing	0.97Å	0.95Å
P	OP2	sing	1.61Å	1.72Å
O5	H13	sing	0.97Å	0.95Å
OP2	HOP2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5'	P	OP3	108.5°	109.4°
P	O5'	C5'	120.2°	123.0°
O5'	P	OP1	106.0°	109.5°
O5'	P	OP2	166.1°	109.4°
OP3	P	OP1	119.6°	109.5°
OP3	P	OP2	85.4°	109.5°
C6	N1	C2	120.3°	120.3°
N1	C6	C5	121.1°	119.2°
N1	C6	H6	119.4°	120.4°
C6	N1	C1'	121.2°	119.8°
N1	C2	N3	119.3°	121.2°
N1	C2	O2	118.9°	119.4°
C2	N1	C1'	118.5°	119.8°
N3	C2	O2	121.8°	119.5°
C2	N3	C4	120.0°	120.8°
N3	C4	N4	117.9°	120.2°
N3	C4	C5	121.9°	119.6°
C4	N4	HN4	120.0°	120.0°
C4	N4	HN4A	120.0°	120.0°
N4	C4	C5	120.2°	120.2°
HN4	N4	HN4A	120.0°	120.0°
C4	C5	O5	122.5°	120.5°
C4	C5	C6	117.5°	118.9°
O5	C5	C6	120.0°	120.5°
C5	O5	H13	109.5°	114.0°
C5	C6	H6	119.5°	120.4°
N1	C1'	C2'	113.6°	109.9°
N1	C1'	H1'	106.7°	109.9°
N1	C1'	O4'	108.4°	109.9°
C2'	C1'	H1'	108.0°	109.9°
C1'	C2'	H2'	111.7°	110.5°
C1'	C2'	H2'A	111.6°	110.4°
C1'	C2'	C3'	103.1°	104.2°
C2'	C1'	O4'	107.1°	107.3°
H1'	C1'	O4'	113.3°	110.0°
H2'	C2'	H2'A	107.2°	110.5°
H2'	C2'	C3'	111.6°	110.5°
H2'A	C2'	C3'	111.7°	110.6°
C2'	C3'	O3'	111.4°	110.9°
C2'	C3'	H3'	114.0°	111.0°
C2'	C3'	C4'	101.8°	102.1°
O3'	C3'	H3'	104.6°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
O3'	C3'	C4'	111.6°	110.9°
H3'	C3'	C4'	113.8°	111.0°
C3'	C4'	H4'	110.0°	110.6°
C3'	C4'	O4'	103.8°	103.5°
C3'	C4'	C5'	115.3°	110.6°
H4'	C4'	O4'	114.5°	110.6°
H4'	C4'	C5'	102.9°	110.5°
C1'	O4'	C4'	109.0°	107.0°
O4'	C4'	C5'	110.8°	110.8°
C4'	C5'	O5'	110.7°	109.5°
C4'	C5'	H5'	109.0°	109.5°
C4'	C5'	H5'A	109.1°	109.5°
O5'	C5'	H5'	109.0°	109.5°
O5'	C5'	H5'A	109.1°	109.5°
H5'	C5'	H5'A	109.9°	109.5°
P	OP1	HOP1	109.5°	114.0°
OP1	P	OP2	66.7°	109.5°
P	OP2	HOP2	109.5°	113.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	P	OP3	OP1	121.6°	120.0°
O5'	P	OP3	OP2	178.5°	119.9°
P	O5'	C5'	C4'	172.5°	180.0°
P	O5'	C5'	H5'	52.5°	60.0°
P	O5'	C5'	H5'A	67.5°	60.1°
O5'	P	OP1	OP2	167.4°	120.0°
O5'	P	OP1	HOP1	122.9°	60.1°
O5'	P	OP2	HOP2	174.2°	180.0°
OP3	P	O5'	C5'	177.2°	55.1°
OP3	P	OP1	OP2	69.8°	120.0°
OP3	P	OP1	HOP1	0.0°	179.9°
OP3	P	OP2	HOP2	0.0°	60.0°
C6	N1	C2	C1'	178.4°	179.7°
C6	N1	C2	N3	0.9°	0.0°
C6	N1	C2	O2	179.3°	179.9°
N1	C6	C5	C4	0.5°	0.0°
N1	C6	C5	O5	179.3°	180.0°
N1	C6	C5	H6	180.0°	180.0°
C6	N1	C1'	C2'	93.9°	115.0°
C6	N1	C1'	H1'	147.2°	6.1°
C6	N1	C1'	O4'	24.9°	127.2°
N1	C2	N3	O2	179.8°	179.9°
N1	C2	N3	C4	0.3°	0.0°
C2	N1	C6	C5	1.0°	0.0°
C2	N1	C6	H6	179.0°	180.0°
C2	N1	C1'	C2'	84.5°	64.7°
C2	N1	C1'	H1'	34.3°	174.2°
C2	N1	C1'	O4'	156.6°	53.1°
C2	N3	C4	N4	179.7°	180.0°
C2	N3	C4	C5	0.3°	0.0°
N3	C2	N1	C1'	179.3°	179.7°
O2	C2	N3	C4	180.0°	179.9°
O2	C2	N1	C1'	0.9°	0.2°
N3	C4	N4	C5	180.0°	180.0°
N3	C4	N4	HN4	0.0°	0.0°
N3	C4	N4	HN4A	180.0°	180.0°
N3	C4	C5	O5	179.9°	180.0°
N3	C4	C5	C6	0.2°	0.0°
C4	N4	HN4	HN4A	179.9°	179.9°
N4	C4	C5	O5	0.1°	0.0°
N4	C4	C5	C6	179.9°	180.0°
HN4	N4	C4	C5	180.0°	180.0°
HN4A	N4	C4	C5	0.0°	0.0°
C4	C5	O5	C6	179.8°	180.0°
C4	C5	C6	H6	179.5°	180.0°
C4	C5	O5	H13	180.0°	0.0°
O5	C5	C6	H6	0.7°	0.0°
C5	C6	N1	C1'	179.4°	179.7°
C6	C5	O5	H13	0.3°	180.0°
H6	C6	N1	C1'	0.6°	0.3°
N1	C1'	C2'	H1'	118.1°	121.0°
N1	C1'	C2'	O4'	119.6°	119.4°
N1	C1'	H1'	O4'	119.2°	121.1°
N1	C1'	C2'	H2'	137.7°	119.9°
N1	C1'	C2'	H2'A	17.7°	2.6°
N1	C1'	C2'	C3'	102.3°	121.4°
N1	C1'	O4'	C4'	130.3°	145.9°
C2'	C1'	H1'	O4'	118.4°	117.9°
C1'	C2'	H2'	H2'A	122.6°	122.5°
C1'	C2'	H2'	C3'	114.9°	114.8°
C1'	C2'	H2'A	C3'	114.9°	114.8°
C1'	C2'	C3'	O3'	152.8°	139.1°
C1'	C2'	C3'	H3'	89.2°	97.4°
C1'	C2'	C3'	C4'	33.7°	20.9°
C2'	C1'	O4'	C4'	7.4°	26.5°
H1'	C1'	C2'	H2'	19.6°	1.2°
H1'	C1'	C2'	H2'A	100.4°	123.7°
H1'	C1'	C2'	C3'	139.6°	117.5°
H1'	C1'	O4'	C4'	111.5°	93.0°
H2'	C2'	H2'A	C3'	122.6°	122.7°
H2'	C2'	C3'	O3'	32.8°	20.4°
H2'	C2'	C3'	H3'	150.8°	144.0°
H2'	C2'	C3'	C4'	86.3°	97.7°
H2'	C2'	C1'	O4'	102.7°	120.7°
H2'A	C2'	C3'	O3'	87.2°	102.3°
H2'A	C2'	C3'	H3'	30.8°	21.3°
H2'A	C2'	C3'	C4'	153.8°	139.6°
H2'A	C2'	C1'	O4'	137.3°	116.8°
C2'	C3'	O3'	H3'	123.6°	123.6°
C2'	C3'	O3'	C4'	113.0°	112.7°
C2'	C3'	H3'	C4'	116.1°	112.8°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	H4'	84.0°	81.5°
C3'	C2'	C1'	O4'	17.3°	2.0°
C2'	C3'	C4'	O4'	38.9°	37.0°
C2'	C3'	C4'	C5'	160.2°	155.7°
O3'	C3'	H3'	C4'	122.0°	123.6°
O3'	C3'	C4'	H4'	34.8°	36.7°
O3'	C3'	C4'	O4'	157.7°	155.2°
O3'	C3'	C4'	C5'	80.9°	86.1°
H3'	C3'	O3'	HO3'	56.4°	62.2°
H3'	C3'	C4'	H4'	152.9°	160.2°
H3'	C3'	C4'	O4'	84.2°	81.2°
H3'	C3'	C4'	C5'	37.2°	37.4°
HO3'	O3'	C3'	C4'	67.0°	174.2°
C3'	C4'	H4'	O4'	116.4°	114.1°
C3'	C4'	H4'	C5'	123.3°	122.9°
C3'	C4'	O4'	C1'	29.2°	40.1°
C3'	C4'	O4'	C5'	124.3°	118.6°
C3'	C4'	C5'	O5'	46.9°	175.0°
C3'	C4'	C5'	H5'	166.9°	55.0°
C3'	C4'	C5'	H5'A	73.1°	65.0°
H4'	C4'	O4'	C1'	90.7°	78.5°
H4'	C4'	O4'	C5'	115.8°	122.9°
H4'	C4'	C5'	O5'	166.6°	52.2°
H4'	C4'	C5'	H5'	73.4°	67.9°
H4'	C4'	C5'	H5'A	46.6°	172.1°
C1'	O4'	C4'	C5'	153.5°	158.6°
O4'	C4'	C5'	O5'	70.6°	70.8°
O4'	C4'	C5'	H5'	49.4°	169.1°
O4'	C4'	C5'	H5'A	169.4°	49.1°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	119.5°	120.0°
O5'	C5'	H5'	H5'A	119.5°	120.0°
C5'	O5'	P	OP1	53.1°	64.9°
C5'	O5'	P	OP2	3.4°	175.0°
OP1	P	OP2	HOP2	125.1°	60.0°
HOP1	OP1	P	OP2	69.7°	59.9°

Definition date:	2011-08-15
Last modified:	2011-11-04
Release status:	REL
Processing site:	RCSB
Derived from:	3TAB