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SummaryGeometryRelated PDB entries

5O5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C05C06doub1.38Å1.38ÅAromatic
C05C03sing1.38Å1.39ÅAromatic
C06C07sing1.39Å1.38ÅAromatic
CL2C03sing1.74Å1.74Å
C03C02doub1.38Å1.36ÅAromatic
C07O08sing1.36Å1.41Å
C07C15doub1.39Å1.38ÅAromatic
O08C09sing1.43Å1.39Å
C02C15sing1.38Å1.38ÅAromatic
C02CL1sing1.74Å1.72Å
C09C10sing1.51Å1.50Å
C10N11sing1.35Å1.34ÅAromatic
C10N14doub1.31Å1.33ÅAromatic
N11N12sing1.29Å1.35ÅAromatic
N14N13sing1.29Å1.34ÅAromatic
N12N13doub1.29Å1.32ÅAromatic
C05H1sing1.08Å1.08Å
C06H2sing1.08Å1.08Å
C09H3sing1.09Å1.10Å
C09H4sing1.09Å1.10Å
N11H5sing0.97Å1.00Å
C15H6sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C06C05C03120.5°120.0°
C05C06C07120.2°120.0°
C06C05H1119.7°120.0°
C05C06H2119.9°120.0°
C05C03CL2119.6°119.9°
C05C03C02119.1°120.1°
C03C05H1119.8°120.0°
C06C07O08116.5°120.0°
C06C07C15118.8°119.9°
C07C06H2119.9°120.0°
CL2C03C02121.2°120.0°
C03C02C15120.7°120.0°
C03C02CL1118.5°120.0°
O08C07C15124.7°120.0°
C07O08C09117.5°117.0°
C07C15C02120.6°119.9°
C07C15H6119.7°120.0°
O08C09C10108.7°109.4°
O08C09H3109.7°109.4°
O08C09H4109.7°109.5°
C15C02CL1120.8°120.0°
C02C15H6119.7°120.0°
C09C10N11127.6°126.7°
C09C10N14123.5°126.7°
C10C09H3109.7°109.5°
C10C09H4109.7°109.5°
N11C10N14108.9°106.6°
C10N11N12106.6°107.2°
C10N11H5126.7°126.4°
C10N14N13107.2°108.0°
N11N12N13108.7°108.8°
N12N11H5126.7°126.4°
N14N13N12108.6°109.4°
H3C09H4109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C06C05C03H1180.0°179.9°
C05C06C07H2180.0°179.9°
C06C05C03CL2179.5°180.0°
C06C05C03C020.0°0.0°
C05C06C07O08177.7°180.0°
C05C06C07C152.2°0.0°
C03C05C06C070.7°0.0°
C05C03CL2C02179.5°179.9°
C05C03C02C150.7°0.0°
C05C03C02CL1179.9°179.7°
C03C05C06H2179.3°179.9°
C06C07O08C15179.9°179.9°
C06C07O08C09174.3°180.0°
C06C07C15C022.9°0.0°
C07C06C05H1179.3°179.9°
C06C07C15H6177.1°179.7°
CL2C03C02C15178.8°180.0°
CL2C03C02CL10.7°0.2°
CL2C03C05H10.5°0.1°
C03C02C15C072.2°0.0°
C03C02C15CL1179.4°179.7°
C02C03C05H1179.9°180.0°
C03C02C15H6177.8°179.7°
O08C07C15C02176.9°180.0°
C07O08C09C1069.2°180.0°
O08C07C06H22.3°0.1°
C07O08C09H3170.9°60.1°
C07O08C09H450.7°60.0°
O08C07C15H63.1°0.2°
C15C07O08C095.8°0.1°
C07C15C02H6180.0°179.7°
C07C15C02CL1178.3°179.7°
C15C07C06H2177.8°180.0°
O08C09C10H3119.9°120.0°
O08C09C10H4119.9°120.0°
O08C09C10N1148.8°0.0°
O08C09C10N14129.8°179.7°
O08C09H3H4120.4°120.0°
CL1C02C15H61.7°0.0°
C09C10N11N14178.8°179.7°
C09C10N11N12179.0°180.0°
C09C10N14N13180.0°179.9°
C10C09H3H4120.4°120.0°
C09C10N11H51.0°0.1°
C10N11N12H5180.0°179.9°
N11C10N14N131.1°0.4°
C10N11N12N130.9°0.0°
N11C10C09H371.0°120.0°
N11C10C09H4168.7°120.0°
N14C10N11N120.1°0.3°
C10N14N13N121.6°0.4°
N14C10C09H3110.3°59.7°
N14C10C09H410.0°60.3°
N14C10N11H5179.9°179.8°
N11N12N13N141.6°0.2°
N13N12N11H5179.1°180.0°
H1C05C06H20.7°0.0°

220113

PDB entries from 2024-05-22

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