5ND
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N10 | CA | sing | 1.47Å | 1.43Å | |
| N10 | C2 | sing | 1.35Å | 1.45Å | |
| CA | CB | sing | 1.53Å | 1.50Å | |
| CA | C | sing | 1.52Å | 1.47Å | |
| CB | CG | sing | 1.51Å | 1.49Å | |
| CG | CD1 | sing | 1.39Å | 1.39Å | Aromatic |
| CG | CD2 | doub | 1.36Å | 1.39Å | Aromatic |
| CD1 | CE1 | doub | 1.36Å | 1.38Å | Aromatic |
| CE1 | CZ | sing | 1.41Å | 1.38Å | Aromatic |
| CZ | CE2 | doub | 1.42Å | 1.38Å | Aromatic |
| CZ | C6 | sing | 1.41Å | 1.39Å | Aromatic |
| CE2 | CD2 | sing | 1.41Å | 1.39Å | Aromatic |
| CE2 | C1 | sing | 1.40Å | 1.38Å | Aromatic |
| C | N11 | sing | 1.35Å | 1.42Å | |
| C | O3 | doub | 1.21Å | 1.22Å | |
| N11 | C2 | sing | 1.34Å | 1.45Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C1 | C3 | doub | 1.36Å | 1.38Å | Aromatic |
| C3 | C5 | sing | 1.39Å | 1.39Å | Aromatic |
| C5 | C6 | doub | 1.36Å | 1.38Å | Aromatic |
| N10 | H10 | sing | 0.97Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB1C | sing | 1.09Å | 1.10Å | |
| CB | HB2C | sing | 1.09Å | 1.10Å | |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1 | H1 | sing | 1.08Å | 1.08Å | |
| N11 | H11 | sing | 0.97Å | 1.00Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N10 | C2 | 107.9° | 106.6° |
| N10 | CA | CB | 109.9° | 110.6° |
| N10 | CA | C | 108.0° | 103.6° |
| CA | N10 | H10 | 126.1° | 126.7° |
| N10 | CA | HA | 110.3° | 110.6° |
| N10 | C2 | N11 | 108.0° | 112.5° |
| N10 | C2 | O2 | 126.0° | 123.8° |
| C2 | N10 | H10 | 126.0° | 126.7° |
| CB | CA | C | 109.6° | 110.6° |
| CA | CB | CG | 109.3° | 109.5° |
| CB | CA | HA | 109.3° | 110.6° |
| CA | CB | HB1C | 109.5° | 109.4° |
| CA | CB | HB2C | 109.5° | 109.5° |
| CA | C | N11 | 108.0° | 105.7° |
| CA | C | O3 | 125.9° | 127.1° |
| C | CA | HA | 109.7° | 110.7° |
| CB | CG | CD1 | 120.3° | 119.5° |
| CB | CG | CD2 | 120.6° | 119.5° |
| CG | CB | HB1C | 109.5° | 109.5° |
| CG | CB | HB2C | 109.5° | 109.4° |
| CD1 | CG | CD2 | 119.1° | 121.0° |
| CG | CD1 | CE1 | 120.4° | 121.0° |
| CG | CD1 | HD1 | 119.8° | 119.5° |
| CG | CD2 | CE2 | 120.6° | 119.7° |
| CG | CD2 | HD2 | 119.7° | 120.2° |
| CD1 | CE1 | CZ | 120.2° | 119.7° |
| CE1 | CD1 | HD1 | 119.8° | 119.5° |
| CD1 | CE1 | HE1 | 119.9° | 120.2° |
| CE1 | CZ | CE2 | 119.9° | 119.3° |
| CE1 | CZ | C6 | 120.1° | 121.3° |
| CZ | CE1 | HE1 | 119.9° | 120.2° |
| CE2 | CZ | C6 | 120.1° | 119.4° |
| CZ | CE2 | CD2 | 119.8° | 119.3° |
| CZ | CE2 | C1 | 120.0° | 119.3° |
| CZ | C6 | C5 | 119.9° | 119.6° |
| CZ | C6 | H6 | 120.1° | 120.2° |
| CD2 | CE2 | C1 | 120.2° | 121.3° |
| CE2 | CD2 | HD2 | 119.7° | 120.1° |
| CE2 | C1 | C3 | 119.9° | 119.7° |
| CE2 | C1 | H1 | 120.0° | 120.2° |
| N11 | C | O3 | 126.0° | 127.2° |
| C | N11 | C2 | 108.0° | 111.6° |
| C | N11 | H11 | 126.0° | 124.2° |
| N11 | C2 | O2 | 126.0° | 123.7° |
| C2 | N11 | H11 | 126.0° | 124.2° |
| C1 | C3 | C5 | 120.1° | 121.0° |
| C3 | C1 | H1 | 120.0° | 120.1° |
| C1 | C3 | H3 | 119.9° | 119.5° |
| C3 | C5 | C6 | 120.0° | 121.0° |
| C5 | C3 | H3 | 120.0° | 119.5° |
| C3 | C5 | H5 | 120.0° | 119.5° |
| C5 | C6 | H6 | 120.0° | 120.2° |
| C6 | C5 | H5 | 120.0° | 119.5° |
| HB1C | CB | HB2C | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N10 | C2 | H10 | 180.0° | 179.7° |
| N10 | CA | CB | C | 118.6° | 114.1° |
| N10 | CA | CB | HA | 121.2° | 122.9° |
| N10 | CA | C | HA | 120.2° | 118.5° |
| N10 | CA | CB | CG | 82.3° | 65.0° |
| N10 | CA | C | N11 | 0.2° | 0.0° |
| N10 | CA | C | O3 | 179.8° | 180.0° |
| CA | N10 | C2 | N11 | 0.5° | 0.0° |
| CA | N10 | C2 | O2 | 179.9° | 180.0° |
| N10 | CA | CB | HB1C | 157.8° | 175.0° |
| N10 | CA | CB | HB2C | 37.7° | 54.9° |
| C2 | N10 | CA | CB | 120.0° | 118.5° |
| C2 | N10 | CA | C | 0.4° | 0.0° |
| N10 | C2 | N11 | C | 0.3° | 0.0° |
| N10 | C2 | N11 | O2 | 179.6° | 180.0° |
| C2 | N10 | CA | HA | 119.5° | 118.6° |
| N10 | C2 | N11 | H11 | 179.7° | 180.0° |
| CB | CA | C | HA | 120.0° | 123.0° |
| CA | CB | CG | HB1C | 120.0° | 120.0° |
| CA | CB | CG | HB2C | 120.0° | 120.0° |
| CA | CB | CG | CD1 | 23.3° | 90.0° |
| CA | CB | CG | CD2 | 156.1° | 90.3° |
| CB | CA | C | N11 | 120.0° | 118.5° |
| CB | CA | C | O3 | 60.0° | 61.5° |
| CB | CA | N10 | H10 | 60.0° | 61.8° |
| CA | CB | HB1C | HB2C | 120.0° | 120.0° |
| C | CA | CB | CG | 159.2° | 179.1° |
| CA | C | N11 | O3 | 180.0° | 180.0° |
| CA | C | N11 | C2 | 0.1° | 0.0° |
| C | CA | N10 | H10 | 179.6° | 179.7° |
| C | CA | CB | HB1C | 39.2° | 60.9° |
| C | CA | CB | HB2C | 80.9° | 59.2° |
| CA | C | N11 | H11 | 180.0° | 180.0° |
| CB | CG | CD1 | CD2 | 179.3° | 179.8° |
| CB | CG | CD1 | CE1 | 179.5° | 180.0° |
| CB | CG | CD2 | CE2 | 179.4° | 179.8° |
| CG | CB | CA | HA | 38.9° | 57.8° |
| CG | CB | HB1C | HB2C | 120.1° | 120.0° |
| CB | CG | CD1 | HD1 | 0.5° | 0.0° |
| CB | CG | CD2 | HD2 | 0.6° | 0.1° |
| CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
| CG | CD1 | CE1 | CZ | 0.1° | 0.0° |
| CD1 | CG | CD2 | CE2 | 0.1° | 0.4° |
| CD1 | CG | CB | HB1C | 96.7° | 30.0° |
| CD1 | CG | CB | HB2C | 143.3° | 150.0° |
| CD1 | CG | CD2 | HD2 | 179.9° | 179.7° |
| CG | CD1 | CE1 | HE1 | 179.8° | 180.0° |
| CD2 | CG | CD1 | CE1 | 0.2° | 0.2° |
| CG | CD2 | CE2 | CZ | 0.0° | 0.4° |
| CG | CD2 | CE2 | HD2 | 180.0° | 179.9° |
| CG | CD2 | CE2 | C1 | 180.0° | 179.8° |
| CD2 | CG | CB | HB1C | 83.9° | 149.8° |
| CD2 | CG | CB | HB2C | 36.1° | 29.7° |
| CD2 | CG | CD1 | HD1 | 179.8° | 179.8° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.0° | 0.0° |
| CD1 | CE1 | CZ | C6 | 180.0° | 180.0° |
| CE1 | CZ | CE2 | C6 | 180.0° | 180.0° |
| CE1 | CZ | CE2 | CD2 | 0.1° | 0.2° |
| CE1 | CZ | CE2 | C1 | 179.9° | 180.0° |
| CE1 | CZ | C6 | C5 | 180.0° | 179.9° |
| CZ | CE1 | CD1 | HD1 | 179.9° | 180.0° |
| CE1 | CZ | C6 | H6 | 0.1° | 0.0° |
| CZ | CE2 | CD2 | C1 | 180.0° | 179.8° |
| CZ | CE2 | C1 | C3 | 0.0° | 0.0° |
| CE2 | CZ | C6 | C5 | 0.0° | 0.1° |
| CZ | CE2 | CD2 | HD2 | 180.0° | 179.7° |
| CE2 | CZ | CE1 | HE1 | 180.0° | 180.0° |
| CE2 | CZ | C6 | H6 | 179.9° | 180.0° |
| CZ | CE2 | C1 | H1 | 180.0° | 180.0° |
| C6 | CZ | CE2 | CD2 | 180.0° | 179.8° |
| C6 | CZ | CE2 | C1 | 0.0° | 0.0° |
| CZ | C6 | C5 | C3 | 0.0° | 0.1° |
| CZ | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | CZ | CE1 | HE1 | 0.1° | 0.0° |
| CZ | C6 | C5 | H5 | 180.0° | 179.9° |
| CD2 | CE2 | C1 | C3 | 180.0° | 179.8° |
| CD2 | CE2 | C1 | H1 | 0.0° | 0.2° |
| CE2 | C1 | C3 | H1 | 180.0° | 180.0° |
| CE2 | C1 | C3 | C5 | 0.1° | 0.0° |
| C1 | CE2 | CD2 | HD2 | 0.0° | 0.1° |
| CE2 | C1 | C3 | H3 | 180.0° | 180.0° |
| C | N11 | C2 | H11 | 180.0° | 179.9° |
| C | N11 | C2 | O2 | 180.0° | 180.0° |
| N11 | C | CA | HA | 120.0° | 118.6° |
| O3 | C | N11 | C2 | 179.9° | 180.0° |
| O3 | C | CA | HA | 60.0° | 61.5° |
| O3 | C | N11 | H11 | 0.1° | 0.1° |
| N11 | C2 | N10 | H10 | 179.5° | 179.8° |
| O2 | C2 | N10 | H10 | 0.1° | 0.3° |
| O2 | C2 | N11 | H11 | 0.1° | 0.1° |
| C1 | C3 | C5 | H3 | 180.0° | 180.0° |
| C1 | C3 | C5 | C6 | 0.1° | 0.0° |
| C1 | C3 | C5 | H5 | 179.9° | 180.0° |
| C3 | C5 | C6 | H5 | 180.0° | 180.0° |
| C3 | C5 | C6 | H6 | 180.0° | 180.0° |
| C5 | C3 | C1 | H1 | 179.9° | 180.0° |
| C6 | C5 | C3 | H3 | 180.0° | 179.9° |
| H10 | N10 | CA | HA | 60.6° | 61.1° |
| HA | CA | CB | HB1C | 81.1° | 62.2° |
| HA | CA | CB | HB2C | 158.9° | 177.8° |
| HD1 | CD1 | CE1 | HE1 | 0.2° | 0.0° |
| H6 | C6 | C5 | H5 | 0.0° | 0.0° |
| H1 | C1 | C3 | H3 | 0.0° | 0.0° |
| H3 | C3 | C5 | H5 | 0.0° | 0.0° |
