5N5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N6	C6	sing	1.38Å	1.34Å
N7	C5	sing	1.35Å	1.33Å	Aromatic
N7	C8	doub	1.30Å	1.34Å	Aromatic
C6	C5	doub	1.41Å	1.39Å	Aromatic
C6	N1	sing	1.33Å	1.34Å	Aromatic
C5	C4	sing	1.41Å	1.39Å	Aromatic
C8	N9	sing	1.36Å	1.34Å	Aromatic
C2'	O2'	sing	1.43Å	1.42Å
C2'	C3'	sing	1.55Å	1.54Å
C2'	C1'	sing	1.55Å	1.53Å
N1	C2	doub	1.32Å	1.33Å	Aromatic
O3'	C3'	sing	1.43Å	1.44Å
C3'	C4'	sing	1.54Å	1.53Å
C4	N9	sing	1.37Å	1.33Å	Aromatic
C4	N3	doub	1.33Å	1.35Å	Aromatic
N9	C1'	sing	1.46Å	1.50Å
C2	N3	sing	1.32Å	1.33Å	Aromatic
C1'	O4'	sing	1.44Å	1.45Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C5'	sing	1.53Å	1.53Å
C5'	N5'	sing	1.47Å	1.47Å
O2'	H1	sing	0.97Å	0.95Å
C2'	H2	sing	1.09Å	1.10Å
C3'	H3	sing	1.09Å	1.10Å
O3'	H4	sing	0.97Å	0.95Å
C4'	H5	sing	1.09Å	1.10Å
C5'	H6	sing	1.09Å	1.10Å
C5'	H7	sing	1.09Å	1.10Å
N5'	H8	sing	1.01Å	1.00Å
N5'	H9	sing	1.01Å	1.00Å
C1'	H11	sing	1.09Å	1.10Å
C8	H12	sing	1.08Å	1.08Å
C2	H13	sing	1.08Å	1.08Å
N6	H14	sing	0.97Å	1.00Å
N6	H15	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N6	C6	C5	120.8°	120.8°
N6	C6	N1	120.2°	120.8°
C6	N6	H14	109.5°	119.9°
C6	N6	H15	109.5°	120.0°
C5	N7	C8	107.7°	109.4°
N7	C5	C6	133.9°	134.7°
N7	C5	C4	107.4°	107.2°
N7	C8	N9	109.7°	110.0°
N7	C8	H12	125.2°	125.0°
C5	C6	N1	118.9°	118.4°
C6	C5	C4	118.6°	118.2°
C6	N1	C2	120.8°	121.2°
C5	C4	N9	107.5°	106.0°
C5	C4	N3	119.4°	119.1°
C8	N9	C4	107.6°	107.5°
C8	N9	C1'	126.6°	126.3°
N9	C8	H12	125.1°	125.0°
O2'	C2'	C3'	110.8°	110.9°
O2'	C2'	C1'	108.5°	110.9°
C2'	O2'	H1	109.5°	114.0°
O2'	C2'	H2	112.0°	110.8°
C3'	C2'	C1'	104.5°	102.1°
C2'	C3'	O3'	111.9°	110.5°
C2'	C3'	C4'	102.0°	104.2°
C3'	C2'	H2	110.3°	110.9°
C2'	C3'	H3	110.0°	110.5°
C2'	C1'	N9	110.0°	110.6°
C2'	C1'	O4'	105.5°	103.5°
C1'	C2'	H2	110.3°	110.9°
C2'	C1'	H11	109.4°	110.6°
N1	C2	N3	122.1°	122.5°
N1	C2	H13	118.9°	118.7°
O3'	C3'	C4'	111.0°	110.5°
O3'	C3'	H3	111.4°	110.5°
C3'	O3'	H4	109.5°	114.0°
C3'	C4'	O4'	102.2°	107.3°
C3'	C4'	C5'	110.4°	109.9°
C4'	C3'	H3	110.2°	110.5°
C3'	C4'	H5	111.1°	109.9°
N9	C4	N3	133.2°	135.0°
C4	N9	C1'	125.7°	126.3°
C4	N3	C2	120.1°	120.7°
N9	C1'	O4'	111.6°	110.6°
N9	C1'	H11	109.8°	110.7°
N3	C2	H13	118.9°	118.8°
C1'	O4'	C4'	105.3°	106.9°
O4'	C1'	H11	110.5°	110.6°
O4'	C4'	C5'	109.6°	109.9°
O4'	C4'	H5	112.3°	109.9°
C4'	C5'	N5'	109.3°	109.5°
C5'	C4'	H5	111.0°	110.0°
C4'	C5'	H6	109.5°	109.4°
C4'	C5'	H7	109.5°	109.5°
N5'	C5'	H6	109.5°	109.5°
N5'	C5'	H7	109.5°	109.5°
C5'	N5'	H8	109.5°	110.9°
C5'	N5'	H9	109.5°	111.0°
H6	C5'	H7	109.5°	109.5°
H8	N5'	H9	109.5°	111.0°
H14	N6	H15	109.4°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N6	C6	C5	N7	0.1°	0.0°
N6	C6	C5	N1	179.7°	179.9°
N6	C6	C5	C4	180.0°	179.7°
N6	C6	N1	C2	179.8°	179.7°
C6	N6	H14	H15	120.0°	180.0°
N7	C5	C6	C4	179.9°	179.7°
N7	C5	C6	N1	179.6°	179.9°
C5	N7	C8	N9	0.1°	0.0°
N7	C5	C4	N9	0.1°	0.4°
N7	C5	C4	N3	179.9°	180.0°
C5	N7	C8	H12	179.9°	179.9°
C8	N7	C5	C6	179.9°	179.9°
C8	N7	C5	C4	0.0°	0.3°
N7	C8	N9	H12	180.0°	179.9°
N7	C8	N9	C4	0.2°	0.3°
N7	C8	N9	C1'	179.8°	179.9°
C5	C6	N1	C2	0.5°	0.4°
C6	C5	C4	N9	179.8°	179.8°
C6	C5	C4	N3	0.2°	0.3°
C5	C6	N6	H14	179.7°	0.0°
C5	C6	N6	H15	60.3°	180.0°
N1	C6	C5	C4	0.3°	0.4°
C6	N1	C2	N3	0.3°	0.2°
C6	N1	C2	H13	179.7°	179.7°
N1	C6	N6	H14	0.0°	179.8°
N1	C6	N6	H15	120.0°	0.1°
C5	C4	N9	C8	0.2°	0.4°
C5	C4	N9	N3	180.0°	179.4°
C5	C4	N9	C1'	179.8°	179.8°
C5	C4	N3	C2	0.4°	0.0°
C8	N9	C1'	C2'	71.9°	95.0°
C8	N9	C4	C1'	179.6°	179.8°
C8	N9	C4	N3	179.8°	179.9°
C8	N9	C1'	O4'	44.9°	19.1°
C8	N9	C1'	H11	167.7°	142.1°
O2'	C2'	C3'	C1'	116.7°	118.2°
O2'	C2'	C3'	H2	124.6°	123.6°
O2'	C2'	C1'	H2	123.0°	123.6°
O2'	C2'	C3'	O3'	23.2°	20.4°
O2'	C2'	C3'	C4'	95.5°	139.1°
O2'	C2'	C1'	N9	115.9°	86.3°
O2'	C2'	C1'	O4'	123.6°	155.2°
O2'	C2'	C3'	H3	147.6°	102.2°
O2'	C2'	C1'	H11	4.8°	36.8°
C3'	C2'	C1'	H2	118.6°	118.2°
C2'	C3'	O3'	C4'	113.3°	114.8°
C2'	C3'	O3'	H3	123.6°	122.6°
C2'	C3'	C4'	H3	116.8°	118.7°
C3'	C2'	C1'	N9	125.8°	155.5°
C3'	C2'	C1'	O4'	5.3°	37.0°
C2'	C3'	C4'	O4'	40.6°	2.0°
C2'	C3'	C4'	C5'	157.1°	121.5°
C3'	C2'	O2'	H1	180.0°	61.4°
C2'	C3'	O3'	H4	180.0°	61.4°
C2'	C3'	C4'	H5	79.3°	117.4°
C3'	C2'	C1'	H11	113.5°	81.5°
C1'	C2'	C3'	O3'	139.9°	97.8°
C1'	C2'	C3'	C4'	21.2°	20.9°
C2'	C1'	N9	C4	108.6°	84.7°
C2'	C1'	N9	O4'	116.7°	114.1°
C2'	C1'	N9	H11	120.4°	122.9°
C2'	C1'	O4'	H11	118.1°	118.5°
C2'	C1'	O4'	C4'	31.8°	40.1°
C1'	C2'	O2'	H1	65.8°	174.1°
C1'	C2'	C3'	H3	95.7°	139.6°
N1	C2	N3	C4	0.2°	0.0°
N1	C2	N3	H13	180.0°	179.9°
O3'	C3'	C4'	H3	123.9°	122.6°
O3'	C3'	C4'	O4'	159.9°	120.7°
O3'	C3'	C4'	C5'	83.6°	119.9°
O3'	C3'	C2'	H2	101.4°	144.0°
O3'	C3'	C4'	H5	40.0°	1.3°
C3'	C4'	O4'	C1'	45.6°	26.5°
C3'	C4'	O4'	C5'	117.1°	119.4°
C3'	C4'	O4'	H5	119.1°	119.5°
C3'	C4'	C5'	H5	123.6°	121.1°
C3'	C4'	C5'	N5'	169.0°	175.0°
C4'	C3'	C2'	H2	139.9°	97.4°
C4'	C3'	O3'	H4	66.7°	176.2°
C3'	C4'	C5'	H6	49.0°	55.0°
C3'	C4'	C5'	H7	71.0°	65.0°
N9	C4	N3	C2	179.6°	179.4°
C4	N9	C1'	O4'	134.7°	161.2°
C4	N9	C1'	H11	11.9°	38.2°
C4	N9	C8	H12	179.8°	179.8°
N3	C4	N9	C1'	0.2°	0.3°
C4	N3	C2	H13	179.8°	179.9°
N9	C1'	O4'	H11	122.4°	123.1°
N9	C1'	O4'	C4'	151.3°	158.5°
N9	C1'	C2'	H2	7.2°	37.3°
C1'	N9	C8	H12	0.2°	0.0°
C1'	O4'	C4'	C5'	162.7°	146.0°
O4'	C1'	C2'	H2	113.4°	81.2°
C1'	O4'	C4'	H5	73.4°	92.9°
O4'	C4'	C5'	H5	124.6°	121.0°
O4'	C4'	C5'	N5'	79.2°	67.1°
O4'	C4'	C3'	H3	76.2°	116.7°
O4'	C4'	C5'	H6	160.8°	172.8°
O4'	C4'	C5'	H7	40.7°	52.9°
C4'	O4'	C1'	H11	86.3°	78.4°
C4'	C5'	N5'	H6	120.0°	120.0°
C4'	C5'	N5'	H7	120.0°	120.0°
C5'	C4'	C3'	H3	40.3°	2.8°
C4'	C5'	H6	H7	120.1°	120.0°
C4'	C5'	N5'	H8	180.0°	56.0°
C4'	C5'	N5'	H9	60.0°	180.0°
N5'	C5'	C4'	H5	45.4°	53.9°
N5'	C5'	H6	H7	120.0°	120.0°
C5'	N5'	H8	H9	120.0°	123.9°
H1	O2'	C2'	H2	56.3°	62.2°
H2	C2'	C3'	H3	22.9°	21.4°
H2	C2'	C1'	H11	127.8°	160.4°
H3	C3'	O3'	H4	56.4°	61.2°
H3	C3'	C4'	H5	163.9°	123.9°
H5	C4'	C5'	H6	74.6°	66.1°
H5	C4'	C5'	H7	165.3°	173.9°
H6	C5'	N5'	H8	60.0°	63.9°
H6	C5'	N5'	H9	180.0°	60.0°
H7	C5'	N5'	H8	60.1°	176.0°
H7	C5'	N5'	H9	60.0°	60.0°

Definition date:	2012-01-06
Last modified:	2012-03-09
Release status:	REL
Processing site:	RCSB
Derived from:	3V8Q