5MU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.34Å | 1.37Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | C5 | sing | 1.41Å | 1.45Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C5 | C5M | sing | 1.51Å | 1.50Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C5M | H71 | sing | 1.09Å | 1.11Å | |
| C5M | H72 | sing | 1.09Å | 1.12Å | |
| C5M | H73 | sing | 1.09Å | 1.12Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.64Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 121.3° | 120.7° |
| C2 | N1 | C1' | 116.1° | 119.7° |
| N1 | C2 | N3 | 115.3° | 120.9° |
| N1 | C2 | O2 | 121.8° | 119.5° |
| C6 | N1 | C1' | 122.6° | 119.6° |
| N1 | C6 | C5 | 122.8° | 119.6° |
| N1 | C6 | H6 | 120.0° | 120.2° |
| N1 | C1' | C2' | 112.9° | 110.4° |
| N1 | C1' | O4' | 108.1° | 110.4° |
| N1 | C1' | H1' | 107.1° | 110.3° |
| N3 | C2 | O2 | 122.9° | 119.6° |
| C2 | N3 | C4 | 127.2° | 120.3° |
| C2 | N3 | HN3 | 116.2° | 119.9° |
| C4 | N3 | HN3 | 116.6° | 119.8° |
| N3 | C4 | C5 | 114.1° | 119.3° |
| N3 | C4 | O4 | 119.5° | 120.4° |
| C5 | C4 | O4 | 126.3° | 120.3° |
| C4 | C5 | C5M | 118.5° | 120.4° |
| C4 | C5 | C6 | 119.2° | 119.2° |
| C5M | C5 | C6 | 122.3° | 120.4° |
| C5 | C5M | H71 | 118.5° | 109.4° |
| C5 | C5M | H72 | 109.0° | 109.5° |
| C5 | C5M | H73 | 109.0° | 109.5° |
| C5 | C6 | H6 | 117.2° | 120.2° |
| H71 | C5M | H72 | 109.0° | 109.4° |
| H71 | C5M | H73 | 108.9° | 109.4° |
| H72 | C5M | H73 | 101.0° | 109.5° |
| C2' | C1' | O4' | 106.4° | 104.9° |
| C2' | C1' | H1' | 108.8° | 110.3° |
| C1' | C2' | O2' | 111.2° | 110.8° |
| C1' | C2' | C3' | 100.8° | 104.0° |
| C1' | C2' | H2' | 114.9° | 110.4° |
| O4' | C1' | H1' | 113.6° | 110.4° |
| C1' | O4' | C4' | 109.7° | 105.3° |
| O2' | C2' | C3' | 112.4° | 110.5° |
| O2' | C2' | H2' | 104.0° | 110.4° |
| C2' | O2' | HO2' | 111.2° | 106.8° |
| C3' | C2' | H2' | 113.8° | 110.6° |
| C2' | C3' | C4' | 100.9° | 104.1° |
| C2' | C3' | O3' | 113.6° | 110.6° |
| C2' | C3' | H3' | 113.4° | 110.6° |
| C4' | C3' | O3' | 112.0° | 110.6° |
| C4' | C3' | H3' | 114.9° | 110.5° |
| C3' | C4' | O4' | 102.8° | 104.8° |
| C3' | C4' | C5' | 115.4° | 110.5° |
| C3' | C4' | H4' | 109.7° | 110.3° |
| O3' | C3' | H3' | 102.6° | 110.4° |
| C3' | O3' | HO3' | 113.5° | 106.8° |
| O4' | C4' | C5' | 108.0° | 110.4° |
| O4' | C4' | H4' | 116.8° | 110.4° |
| C5' | C4' | H4' | 104.6° | 110.3° |
| C4' | C5' | O5' | 109.7° | 109.5° |
| C4' | C5' | H5' | 112.1° | 109.5° |
| C4' | C5' | H5'' | 112.1° | 109.5° |
| O5' | C5' | H5' | 112.1° | 109.5° |
| O5' | C5' | H5'' | 112.1° | 109.4° |
| C5' | O5' | P | 120.9° | 106.8° |
| H5' | C5' | H5'' | 98.3° | 109.5° |
| O5' | P | OP1 | 108.4° | 109.5° |
| O5' | P | OP2 | 107.3° | 109.4° |
| O5' | P | OP3 | 106.0° | 109.5° |
| OP1 | P | OP2 | 120.0° | 109.4° |
| OP1 | P | OP3 | 110.8° | 109.5° |
| OP2 | P | OP3 | 103.4° | 109.4° |
| P | OP2 | HOP2 | 107.3° | 106.8° |
| P | OP3 | HOP3 | 106.0° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 179.2° | 179.9° |
| N1 | C2 | N3 | O2 | 179.7° | 179.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.3° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.1° |
| C2 | N1 | C6 | H6 | 179.6° | 180.0° |
| C2 | N1 | C1' | C2' | 86.4° | 58.4° |
| C2 | N1 | C1' | O4' | 156.1° | 57.1° |
| C2 | N1 | C1' | H1' | 33.4° | 179.4° |
| C6 | N1 | C2 | N3 | 0.2° | 0.1° |
| C6 | N1 | C2 | O2 | 179.9° | 179.9° |
| N1 | C6 | C5 | C4 | 1.2° | 0.3° |
| N1 | C6 | C5 | C5M | 177.9° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| C6 | N1 | C1' | C2' | 92.8° | 121.5° |
| C6 | N1 | C1' | O4' | 24.7° | 123.0° |
| C6 | N1 | C1' | H1' | 147.4° | 0.7° |
| C1' | N1 | C2 | N3 | 179.4° | 180.0° |
| C1' | N1 | C2 | O2 | 0.9° | 0.0° |
| C1' | N1 | C6 | C5 | 178.8° | 180.0° |
| C1' | N1 | C6 | H6 | 1.2° | 0.1° |
| N1 | C1' | C2' | O4' | 118.4° | 118.9° |
| N1 | C1' | C2' | H1' | 118.8° | 122.2° |
| N1 | C1' | O4' | H1' | 118.7° | 122.2° |
| N1 | C1' | C2' | O2' | 149.1° | 98.5° |
| N1 | C1' | C2' | C3' | 91.5° | 142.7° |
| N1 | C1' | C2' | H2' | 31.4° | 24.1° |
| N1 | C1' | O4' | C4' | 120.5° | 159.3° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.9° | 0.5° |
| C2 | N3 | C4 | O4 | 178.7° | 180.0° |
| O2 | C2 | N3 | C4 | 179.6° | 179.7° |
| O2 | C2 | N3 | HN3 | 0.4° | 0.0° |
| N3 | C4 | C5 | O4 | 177.6° | 179.5° |
| N3 | C4 | C5 | C5M | 177.7° | 179.8° |
| N3 | C4 | C5 | C6 | 1.4° | 0.5° |
| HN3 | N3 | C4 | C5 | 179.1° | 179.8° |
| HN3 | N3 | C4 | O4 | 1.3° | 0.3° |
| C4 | C5 | C5M | C6 | 179.1° | 179.7° |
| C4 | C5 | C5M | H71 | 180.0° | 0.3° |
| C4 | C5 | C5M | H72 | 54.7° | 119.7° |
| C4 | C5 | C5M | H73 | 54.7° | 120.2° |
| C4 | C5 | C6 | H6 | 178.8° | 179.8° |
| O4 | C4 | C5 | C5M | 0.1° | 0.3° |
| O4 | C4 | C5 | C6 | 179.0° | 180.0° |
| C5 | C5M | H71 | H72 | 125.4° | 120.0° |
| C5 | C5M | H71 | H73 | 125.3° | 120.0° |
| C5 | C5M | H72 | H73 | 114.7° | 120.1° |
| C5M | C5 | C6 | H6 | 2.1° | 0.1° |
| C6 | C5 | C5M | H71 | 1.0° | 180.0° |
| C6 | C5 | C5M | H72 | 124.4° | 60.0° |
| C6 | C5 | C5M | H73 | 126.2° | 60.1° |
| H71 | C5M | H72 | H73 | 114.6° | 119.9° |
| C2' | C1' | O4' | H1' | 119.7° | 118.8° |
| C1' | C2' | O2' | C3' | 112.2° | 114.7° |
| C1' | C2' | O2' | H2' | 124.2° | 122.6° |
| C1' | C2' | C3' | H2' | 123.6° | 118.5° |
| C1' | C2' | O2' | HO2' | 180.0° | 176.1° |
| C1' | C2' | C3' | C4' | 41.2° | 0.1° |
| C1' | C2' | C3' | O3' | 161.2° | 118.8° |
| C1' | C2' | C3' | H3' | 82.2° | 118.6° |
| C2' | C1' | O4' | C4' | 1.1° | 40.4° |
| O4' | C1' | C2' | O2' | 92.4° | 142.6° |
| O4' | C1' | C2' | C3' | 27.0° | 23.9° |
| O4' | C1' | C2' | H2' | 149.8° | 94.8° |
| C1' | O4' | C4' | C3' | 25.5° | 40.4° |
| C1' | O4' | C4' | C5' | 147.9° | 159.5° |
| C1' | O4' | C4' | H4' | 94.6° | 78.3° |
| H1' | C1' | C2' | O2' | 30.3° | 23.7° |
| H1' | C1' | C2' | C3' | 149.7° | 95.0° |
| H1' | C1' | C2' | H2' | 87.4° | 146.4° |
| H1' | C1' | O4' | C4' | 120.8° | 78.4° |
| O2' | C2' | C3' | H2' | 117.9° | 122.6° |
| O2' | C2' | C3' | C4' | 77.3° | 118.9° |
| O2' | C2' | C3' | O3' | 42.7° | 0.1° |
| O2' | C2' | C3' | H3' | 159.3° | 122.5° |
| C3' | C2' | O2' | HO2' | 67.8° | 61.4° |
| C2' | C3' | C4' | O3' | 121.1° | 118.8° |
| C2' | C3' | C4' | H3' | 122.3° | 118.7° |
| C2' | C3' | O3' | H3' | 122.8° | 122.7° |
| C2' | C3' | C4' | O4' | 41.4° | 24.0° |
| C2' | C3' | C4' | C5' | 158.8° | 143.0° |
| C2' | C3' | C4' | H4' | 83.5° | 94.8° |
| C2' | C3' | O3' | HO3' | 180.0° | 65.3° |
| H2' | C2' | O2' | HO2' | 55.8° | 61.3° |
| H2' | C2' | C3' | C4' | 164.8° | 118.6° |
| H2' | C2' | C3' | O3' | 75.2° | 122.7° |
| H2' | C2' | C3' | H3' | 41.4° | 0.1° |
| C4' | C3' | O3' | H3' | 123.8° | 122.6° |
| C3' | C4' | O4' | C5' | 122.4° | 119.0° |
| C3' | C4' | O4' | H4' | 120.1° | 118.8° |
| C3' | C4' | C5' | H4' | 120.6° | 122.3° |
| C4' | C3' | O3' | HO3' | 66.5° | 180.0° |
| C3' | C4' | C5' | O5' | 58.0° | 176.9° |
| C3' | C4' | C5' | H5' | 176.7° | 63.1° |
| C3' | C4' | C5' | H5'' | 67.2° | 57.0° |
| O3' | C3' | C4' | O4' | 162.5° | 142.8° |
| O3' | C3' | C4' | C5' | 80.1° | 98.3° |
| O3' | C3' | C4' | H4' | 37.6° | 24.0° |
| H3' | C3' | C4' | O4' | 80.9° | 94.7° |
| H3' | C3' | C4' | C5' | 36.4° | 24.2° |
| H3' | C3' | C4' | H4' | 154.2° | 146.5° |
| H3' | C3' | O3' | HO3' | 57.2° | 57.4° |
| O4' | C4' | C5' | H4' | 125.1° | 122.3° |
| O4' | C4' | C5' | O5' | 56.4° | 61.4° |
| O4' | C4' | C5' | H5' | 68.9° | 178.5° |
| O4' | C4' | C5' | H5'' | 178.4° | 58.5° |
| C4' | C5' | O5' | H5' | 125.3° | 120.0° |
| C4' | C5' | O5' | H5'' | 125.3° | 120.0° |
| C4' | C5' | H5' | H5'' | 118.1° | 120.0° |
| C4' | C5' | O5' | P | 167.6° | 180.0° |
| H4' | C4' | C5' | O5' | 178.6° | 60.8° |
| H4' | C4' | C5' | H5' | 56.2° | 59.2° |
| H4' | C4' | C5' | H5'' | 53.3° | 179.2° |
| O5' | C5' | H5' | H5'' | 118.0° | 120.0° |
| C5' | O5' | P | OP1 | 155.4° | 60.0° |
| C5' | O5' | P | OP2 | 24.4° | 180.0° |
| C5' | O5' | P | OP3 | 85.6° | 60.0° |
| H5' | C5' | O5' | P | 67.2° | 60.0° |
| H5'' | C5' | O5' | P | 42.3° | 60.0° |
| O5' | P | OP1 | OP2 | 123.7° | 120.0° |
| O5' | P | OP1 | OP3 | 115.9° | 120.1° |
| O5' | P | OP2 | OP3 | 111.8° | 120.0° |
| O5' | P | OP2 | HOP2 | 180.0° | 179.9° |
| O5' | P | OP3 | HOP3 | 179.9° | 60.0° |
| OP1 | P | OP2 | OP3 | 124.0° | 120.0° |
| OP1 | P | OP2 | HOP2 | 55.7° | 59.9° |
| OP1 | P | OP3 | HOP3 | 62.5° | 180.0° |
| OP2 | P | OP3 | HOP3 | 67.3° | 60.0° |
| OP3 | P | OP2 | HOP2 | 68.2° | 60.1° |
