5MC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N1 | C2 | sing | 1.34Å | 1.39Å | |
| N1 | C6 | sing | 1.36Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| C4 | N4 | sing | 1.37Å | 1.34Å | |
| C4 | C5 | sing | 1.41Å | 1.42Å | |
| N4 | HN41 | sing | 0.97Å | 1.02Å | |
| N4 | HN42 | sing | 0.97Å | 1.02Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | CM5 | sing | 1.51Å | 1.49Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| CM5 | HM51 | sing | 1.09Å | 1.11Å | |
| CM5 | HM52 | sing | 1.09Å | 1.12Å | |
| CM5 | HM53 | sing | 1.09Å | 1.12Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.9° | 109.5° |
| OP1 | P | OP3 | 107.4° | 109.5° |
| OP1 | P | O5' | 108.2° | 109.5° |
| OP2 | P | OP3 | 108.4° | 109.4° |
| OP2 | P | O5' | 107.3° | 109.5° |
| P | OP2 | HOP2 | 119.8° | 106.8° |
| OP3 | P | O5' | 104.8° | 109.5° |
| P | OP3 | HOP3 | 107.3° | 106.8° |
| P | O5' | C5' | 120.9° | 106.8° |
| O5' | C5' | C4' | 110.0° | 109.5° |
| O5' | C5' | H5' | 112.0° | 109.4° |
| O5' | C5' | H5'' | 112.0° | 109.4° |
| C4' | C5' | H5' | 112.0° | 109.5° |
| C4' | C5' | H5'' | 112.0° | 109.5° |
| C5' | C4' | O4' | 110.0° | 110.4° |
| C5' | C4' | C3' | 114.2° | 110.5° |
| C5' | C4' | H4' | 104.0° | 110.4° |
| H5' | C5' | H5'' | 98.4° | 109.5° |
| O4' | C4' | C3' | 102.6° | 104.8° |
| O4' | C4' | H4' | 115.3° | 110.4° |
| C4' | O4' | C1' | 109.3° | 105.2° |
| C3' | C4' | H4' | 111.1° | 110.3° |
| C4' | C3' | O3' | 111.0° | 110.5° |
| C4' | C3' | C2' | 101.4° | 104.1° |
| C4' | C3' | H3' | 114.3° | 110.4° |
| O4' | C1' | C2' | 106.9° | 104.9° |
| O4' | C1' | N1 | 109.1° | 110.3° |
| O4' | C1' | H1' | 111.7° | 110.3° |
| O3' | C3' | C2' | 111.2° | 110.6° |
| O3' | C3' | H3' | 105.0° | 110.5° |
| C3' | O3' | HO3' | 111.0° | 106.8° |
| C2' | C3' | H3' | 114.1° | 110.6° |
| C3' | C2' | O2' | 114.3° | 110.5° |
| C3' | C2' | C1' | 100.9° | 104.0° |
| C3' | C2' | H2' | 112.7° | 110.5° |
| O2' | C2' | C1' | 111.3° | 110.8° |
| O2' | C2' | H2' | 102.5° | 110.4° |
| C2' | O2' | HO2' | 114.3° | 106.8° |
| C1' | C2' | H2' | 115.5° | 110.4° |
| C2' | C1' | N1 | 110.2° | 110.4° |
| C2' | C1' | H1' | 110.6° | 110.4° |
| N1 | C1' | H1' | 108.5° | 110.4° |
| C1' | N1 | C2 | 118.3° | 119.9° |
| C1' | N1 | C6 | 121.5° | 119.8° |
| C2 | N1 | C6 | 120.2° | 120.4° |
| N1 | C2 | O2 | 118.9° | 119.4° |
| N1 | C2 | N3 | 119.5° | 121.1° |
| N1 | C6 | C5 | 120.7° | 119.3° |
| N1 | C6 | H6 | 120.6° | 120.4° |
| O2 | C2 | N3 | 121.6° | 119.5° |
| C2 | N3 | C4 | 119.9° | 120.7° |
| N3 | C4 | N4 | 117.7° | 120.2° |
| N3 | C4 | C5 | 121.9° | 119.6° |
| N4 | C4 | C5 | 120.3° | 120.2° |
| C4 | N4 | HN41 | 117.8° | 120.0° |
| C4 | N4 | HN42 | 109.2° | 120.1° |
| C4 | C5 | C6 | 117.7° | 119.0° |
| C4 | C5 | CM5 | 118.9° | 120.5° |
| HN41 | N4 | HN42 | 109.2° | 119.9° |
| C6 | C5 | CM5 | 123.1° | 120.5° |
| C5 | C6 | H6 | 118.7° | 120.3° |
| C5 | CM5 | HM51 | 118.9° | 109.5° |
| C5 | CM5 | HM52 | 108.8° | 109.5° |
| C5 | CM5 | HM53 | 108.8° | 109.5° |
| HM51 | CM5 | HM52 | 108.8° | 109.4° |
| HM51 | CM5 | HM53 | 108.9° | 109.5° |
| HM52 | CM5 | HM53 | 101.2° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 123.6° | 120.0° |
| OP1 | P | OP2 | O5' | 123.8° | 120.0° |
| OP1 | P | OP3 | O5' | 114.9° | 120.0° |
| OP1 | P | OP2 | HOP2 | 179.9° | 60.0° |
| OP1 | P | OP3 | HOP3 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 154.9° | 60.0° |
| OP2 | P | OP3 | O5' | 114.3° | 120.0° |
| OP2 | P | OP3 | HOP3 | 49.3° | 60.0° |
| OP2 | P | O5' | C5' | 24.2° | 180.0° |
| OP3 | P | OP2 | HOP2 | 56.5° | 60.0° |
| OP3 | P | O5' | C5' | 90.8° | 60.0° |
| O5' | P | OP2 | HOP2 | 56.1° | 180.0° |
| O5' | P | OP3 | HOP3 | 65.0° | 60.0° |
| P | O5' | C5' | C4' | 168.7° | 180.0° |
| P | O5' | C5' | H5' | 66.0° | 60.0° |
| P | O5' | C5' | H5'' | 43.4° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 117.9° | 119.9° |
| O5' | C5' | C4' | O4' | 40.4° | 61.4° |
| O5' | C5' | C4' | C3' | 74.2° | 176.9° |
| O5' | C5' | C4' | H4' | 164.5° | 60.9° |
| C4' | C5' | H5' | H5'' | 118.0° | 120.0° |
| C5' | C4' | O4' | C3' | 121.9° | 119.0° |
| C5' | C4' | O4' | H4' | 117.2° | 122.3° |
| C5' | C4' | C3' | H4' | 117.3° | 122.3° |
| C5' | C4' | O4' | C1' | 148.4° | 159.4° |
| C5' | C4' | C3' | O3' | 81.3° | 98.3° |
| C5' | C4' | C3' | C2' | 160.4° | 143.0° |
| C5' | C4' | C3' | H3' | 37.2° | 24.2° |
| H5' | C5' | C4' | O4' | 165.7° | 178.6° |
| H5' | C5' | C4' | C3' | 51.0° | 63.1° |
| H5' | C5' | C4' | H4' | 70.3° | 59.1° |
| H5'' | C5' | C4' | O4' | 84.8° | 58.5° |
| H5'' | C5' | C4' | C3' | 160.5° | 56.9° |
| H5'' | C5' | C4' | H4' | 39.2° | 179.2° |
| O4' | C4' | C3' | H4' | 123.8° | 118.8° |
| O4' | C4' | C3' | O3' | 159.7° | 142.8° |
| O4' | C4' | C3' | C2' | 41.5° | 24.0° |
| O4' | C4' | C3' | H3' | 81.7° | 94.7° |
| C4' | O4' | C1' | C2' | 0.7° | 40.4° |
| C4' | O4' | C1' | N1 | 119.8° | 159.3° |
| C4' | O4' | C1' | H1' | 120.4° | 78.5° |
| C3' | C4' | O4' | C1' | 26.5° | 40.4° |
| C4' | C3' | O3' | C2' | 112.1° | 114.7° |
| C4' | C3' | O3' | H3' | 124.0° | 122.5° |
| C4' | C3' | C2' | H3' | 123.4° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 179.9° |
| C4' | C3' | C2' | O2' | 79.3° | 118.9° |
| C4' | C3' | C2' | C1' | 40.3° | 0.1° |
| C4' | C3' | C2' | H2' | 164.1° | 118.6° |
| H4' | C4' | O4' | C1' | 94.4° | 78.3° |
| H4' | C4' | C3' | O3' | 35.9° | 24.0° |
| H4' | C4' | C3' | C2' | 82.3° | 94.7° |
| H4' | C4' | C3' | H3' | 154.5° | 146.5° |
| O4' | C1' | C2' | C3' | 25.2° | 23.9° |
| O4' | C1' | C2' | O2' | 96.5° | 142.6° |
| O4' | C1' | C2' | N1 | 118.4° | 118.8° |
| O4' | C1' | C2' | H1' | 121.7° | 118.8° |
| O4' | C1' | C2' | H2' | 147.0° | 94.7° |
| O4' | C1' | N1 | H1' | 121.8° | 122.2° |
| O4' | C1' | N1 | C2 | 176.3° | 57.2° |
| O4' | C1' | N1 | C6 | 3.7° | 123.0° |
| O3' | C3' | C2' | H3' | 118.5° | 122.7° |
| O3' | C3' | C2' | O2' | 38.8° | 0.2° |
| O3' | C3' | C2' | C1' | 158.4° | 118.8° |
| O3' | C3' | C2' | H2' | 77.8° | 122.7° |
| C2' | C3' | O3' | HO3' | 67.9° | 65.3° |
| C3' | C2' | O2' | C1' | 113.6° | 114.8° |
| C3' | C2' | O2' | H2' | 122.3° | 122.6° |
| C3' | C2' | C1' | H2' | 121.9° | 118.6° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 93.2° | 142.7° |
| C3' | C2' | C1' | H1' | 146.9° | 95.0° |
| H3' | C3' | O3' | HO3' | 56.0° | 57.4° |
| H3' | C3' | C2' | O2' | 157.3° | 122.5° |
| H3' | C3' | C2' | C1' | 83.1° | 118.5° |
| H3' | C3' | C2' | H2' | 40.7° | 0.0° |
| O2' | C2' | C1' | H2' | 116.4° | 122.7° |
| O2' | C2' | C1' | N1 | 145.1° | 98.5° |
| O2' | C2' | C1' | H1' | 25.2° | 23.8° |
| C1' | C2' | O2' | HO2' | 66.4° | 176.2° |
| C2' | C1' | N1 | H1' | 121.2° | 122.3° |
| C2' | C1' | N1 | C2 | 66.6° | 58.3° |
| C2' | C1' | N1 | C6 | 113.3° | 121.5° |
| H2' | C2' | O2' | HO2' | 57.7° | 61.2° |
| H2' | C2' | C1' | N1 | 28.7° | 24.1° |
| H2' | C2' | C1' | H1' | 91.2° | 146.4° |
| C1' | N1 | C2 | C6 | 180.0° | 179.8° |
| C1' | N1 | C2 | O2 | 2.2° | 0.1° |
| C1' | N1 | C2 | N3 | 178.3° | 180.0° |
| C1' | N1 | C6 | C5 | 179.6° | 179.9° |
| C1' | N1 | C6 | H6 | 0.3° | 0.2° |
| H1' | C1' | N1 | C2 | 54.5° | 179.3° |
| H1' | C1' | N1 | C6 | 125.5° | 0.8° |
| N1 | C2 | O2 | N3 | 179.4° | 179.9° |
| N1 | C2 | N3 | C4 | 1.1° | 0.4° |
| C2 | N1 | C6 | C5 | 0.4° | 0.1° |
| C2 | N1 | C6 | H6 | 179.6° | 180.0° |
| C6 | N1 | C2 | O2 | 177.7° | 180.0° |
| C6 | N1 | C2 | N3 | 1.7° | 0.1° |
| N1 | C6 | C5 | C4 | 1.4° | 0.3° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | CM5 | 173.0° | 180.0° |
| O2 | C2 | N3 | C4 | 178.3° | 179.7° |
| C2 | N3 | C4 | N4 | 178.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.7° | 0.5° |
| N3 | C4 | N4 | C5 | 179.6° | 179.5° |
| N3 | C4 | N4 | HN41 | 180.0° | 0.1° |
| N3 | C4 | N4 | HN42 | 54.7° | 180.0° |
| N3 | C4 | C5 | C6 | 2.0° | 0.5° |
| N3 | C4 | C5 | CM5 | 172.6° | 179.7° |
| C4 | N4 | HN41 | HN42 | 125.3° | 179.9° |
| N4 | C4 | C5 | C6 | 177.6° | 180.0° |
| N4 | C4 | C5 | CM5 | 7.8° | 0.3° |
| C5 | C4 | N4 | HN41 | 0.4° | 179.5° |
| C5 | C4 | N4 | HN42 | 124.9° | 0.6° |
| C4 | C5 | C6 | CM5 | 174.4° | 179.7° |
| C4 | C5 | C6 | H6 | 178.6° | 179.8° |
| C4 | C5 | CM5 | HM51 | 180.0° | 0.2° |
| C4 | C5 | CM5 | HM52 | 54.7° | 119.7° |
| C4 | C5 | CM5 | HM53 | 54.7° | 120.3° |
| C6 | C5 | CM5 | HM51 | 5.7° | 180.0° |
| C6 | C5 | CM5 | HM52 | 119.6° | 60.0° |
| C6 | C5 | CM5 | HM53 | 131.0° | 60.0° |
| CM5 | C5 | C6 | H6 | 7.0° | 0.1° |
| C5 | CM5 | HM51 | HM52 | 125.3° | 120.0° |
| C5 | CM5 | HM51 | HM53 | 125.3° | 120.0° |
| C5 | CM5 | HM52 | HM53 | 114.5° | 120.0° |
| HM51 | CM5 | HM52 | HM53 | 114.6° | 120.0° |
