5M6
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C23 | C25 | sing | 1.54Å | 1.57Å | |
C23 | O13 | sing | 1.43Å | 1.47Å | |
C25 | C24 | sing | 1.55Å | 1.58Å | |
C24 | C18 | sing | 1.55Å | 1.57Å | |
O13 | C18 | sing | 1.44Å | 1.47Å | |
C18 | C16 | sing | 1.53Å | 1.55Å | |
C16 | N11 | sing | 1.46Å | 1.49Å | |
N11 | C9 | sing | 1.35Å | 1.37Å | |
C22 | C8 | sing | 1.51Å | 1.49Å | |
C7 | C6 | doub | 1.34Å | 1.32Å | Aromatic |
C7 | C2 | sing | 1.40Å | 1.42Å | Aromatic |
C9 | O12 | doub | 1.22Å | 1.27Å | |
C9 | C6 | sing | 1.47Å | 1.47Å | |
C6 | S5 | sing | 1.76Å | 1.78Å | Aromatic |
C2 | C8 | sing | 1.43Å | 1.43Å | Aromatic |
C2 | C1 | doub | 1.39Å | 1.40Å | Aromatic |
C8 | N4 | doub | 1.30Å | 1.32Å | Aromatic |
N4 | N3 | sing | 1.40Å | 1.39Å | Aromatic |
C1 | S5 | sing | 1.76Å | 1.75Å | Aromatic |
C1 | N3 | sing | 1.37Å | 1.36Å | Aromatic |
N3 | C10 | sing | 1.40Å | 1.38Å | |
C10 | C15 | doub | 1.39Å | 1.39Å | Aromatic |
C10 | C14 | sing | 1.39Å | 1.38Å | Aromatic |
C15 | C19 | sing | 1.38Å | 1.40Å | Aromatic |
C14 | C20 | doub | 1.38Å | 1.38Å | Aromatic |
C19 | C17 | doub | 1.38Å | 1.38Å | Aromatic |
C20 | C17 | sing | 1.38Å | 1.38Å | Aromatic |
C17 | CL1 | sing | 1.74Å | 1.79Å | |
C7 | H1 | sing | 1.08Å | 1.08Å | |
C15 | H2 | sing | 1.08Å | 1.08Å | |
C20 | H3 | sing | 1.08Å | 1.08Å | |
C22 | H4 | sing | 1.09Å | 1.10Å | |
C22 | H5 | sing | 1.09Å | 1.10Å | |
C22 | H6 | sing | 1.09Å | 1.10Å | |
C24 | H7 | sing | 1.09Å | 1.10Å | |
C24 | H8 | sing | 1.09Å | 1.10Å | |
N11 | H9 | sing | 0.97Å | 1.00Å | |
C14 | H10 | sing | 1.08Å | 1.08Å | |
C16 | H11 | sing | 1.09Å | 1.10Å | |
C16 | H12 | sing | 1.09Å | 1.10Å | |
C18 | H13 | sing | 1.09Å | 1.10Å | |
C19 | H14 | sing | 1.08Å | 1.08Å | |
C23 | H15 | sing | 1.09Å | 1.10Å | |
C23 | H16 | sing | 1.09Å | 1.10Å | |
C25 | H17 | sing | 1.09Å | 1.10Å | |
C25 | H18 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C25 | C23 | O13 | 106.7° | 107.6° |
C23 | C25 | C24 | 102.9° | 102.2° |
C25 | C23 | H15 | 110.2° | 109.8° |
C25 | C23 | H16 | 110.1° | 109.8° |
C23 | C25 | H17 | 111.1° | 110.9° |
C23 | C25 | H18 | 111.1° | 110.8° |
C23 | O13 | C18 | 108.5° | 110.0° |
O13 | C23 | H15 | 110.1° | 109.8° |
O13 | C23 | H16 | 110.2° | 109.8° |
C25 | C24 | C18 | 104.7° | 101.0° |
C25 | C24 | H7 | 110.6° | 111.1° |
C25 | C24 | H8 | 110.6° | 111.1° |
C24 | C25 | H17 | 111.1° | 110.8° |
C24 | C25 | H18 | 111.1° | 110.9° |
C24 | C18 | O13 | 108.6° | 105.1° |
C24 | C18 | C16 | 110.4° | 110.3° |
C18 | C24 | H7 | 110.7° | 111.2° |
C18 | C24 | H8 | 110.6° | 111.1° |
C24 | C18 | H13 | 107.8° | 110.3° |
O13 | C18 | C16 | 112.7° | 110.3° |
O13 | C18 | H13 | 109.1° | 110.3° |
C18 | C16 | N11 | 107.6° | 109.5° |
C18 | C16 | H11 | 109.9° | 109.5° |
C18 | C16 | H12 | 109.9° | 109.4° |
C16 | C18 | H13 | 108.0° | 110.3° |
C16 | N11 | C9 | 121.3° | 120.0° |
C16 | N11 | H9 | 119.3° | 120.0° |
N11 | C16 | H11 | 109.9° | 109.5° |
N11 | C16 | H12 | 109.9° | 109.4° |
N11 | C9 | O12 | 121.3° | 120.0° |
N11 | C9 | C6 | 121.2° | 120.0° |
C9 | N11 | H9 | 119.4° | 120.0° |
C22 | C8 | C2 | 121.7° | 125.7° |
C22 | C8 | N4 | 126.6° | 125.7° |
C8 | C22 | H4 | 109.5° | 109.5° |
C8 | C22 | H5 | 109.5° | 109.5° |
C8 | C22 | H6 | 109.5° | 109.5° |
C6 | C7 | C2 | 111.2° | 115.3° |
C7 | C6 | C9 | 126.8° | 124.8° |
C7 | C6 | S5 | 114.9° | 110.4° |
C6 | C7 | H1 | 124.4° | 122.4° |
C7 | C2 | C8 | 141.6° | 140.5° |
C7 | C2 | C1 | 114.4° | 113.0° |
C2 | C7 | H1 | 124.4° | 122.3° |
O12 | C9 | C6 | 117.1° | 120.0° |
C9 | C6 | S5 | 117.8° | 124.8° |
C6 | S5 | C1 | 88.9° | 91.5° |
C8 | C2 | C1 | 104.0° | 106.5° |
C2 | C8 | N4 | 111.8° | 108.6° |
C2 | C1 | S5 | 110.6° | 109.8° |
C2 | C1 | N3 | 107.8° | 107.4° |
C8 | N4 | N3 | 105.4° | 109.4° |
N4 | N3 | C1 | 110.9° | 108.1° |
N4 | N3 | C10 | 126.1° | 125.9° |
S5 | C1 | N3 | 141.6° | 142.8° |
C1 | N3 | C10 | 122.6° | 126.0° |
N3 | C10 | C15 | 122.1° | 120.1° |
N3 | C10 | C14 | 116.2° | 120.1° |
C15 | C10 | C14 | 121.6° | 119.9° |
C10 | C15 | C19 | 119.2° | 120.0° |
C10 | C15 | H2 | 120.4° | 120.0° |
C10 | C14 | C20 | 117.4° | 119.9° |
C10 | C14 | H10 | 121.3° | 120.0° |
C15 | C19 | C17 | 119.7° | 120.0° |
C19 | C15 | H2 | 120.4° | 120.0° |
C15 | C19 | H14 | 120.1° | 120.0° |
C14 | C20 | C17 | 123.0° | 120.1° |
C14 | C20 | H3 | 118.5° | 120.0° |
C20 | C14 | H10 | 121.3° | 120.0° |
C19 | C17 | C20 | 119.0° | 120.1° |
C19 | C17 | CL1 | 121.9° | 120.0° |
C17 | C19 | H14 | 120.1° | 120.0° |
C20 | C17 | CL1 | 119.1° | 119.9° |
C17 | C20 | H3 | 118.6° | 120.0° |
H4 | C22 | H5 | 109.5° | 109.5° |
H4 | C22 | H6 | 109.4° | 109.4° |
H5 | C22 | H6 | 109.5° | 109.5° |
H7 | C24 | H8 | 109.5° | 111.0° |
H11 | C16 | H12 | 109.5° | 109.5° |
H15 | C23 | H16 | 109.5° | 109.9° |
H17 | C25 | H18 | 109.5° | 110.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C25 | C23 | O13 | H15 | 119.6° | 119.5° |
C25 | C23 | O13 | H16 | 119.6° | 119.5° |
C23 | C25 | C24 | H17 | 118.9° | 118.2° |
C23 | C25 | C24 | H18 | 118.9° | 118.2° |
C23 | C25 | C24 | C18 | 18.7° | 34.1° |
C25 | C23 | O13 | C18 | 28.4° | 1.7° |
C23 | C25 | C24 | H7 | 137.9° | 152.1° |
C23 | C25 | C24 | H8 | 100.5° | 83.8° |
C25 | C23 | H15 | H16 | 121.3° | 120.9° |
C23 | C25 | H17 | H18 | 123.0° | 123.6° |
O13 | C23 | C25 | C24 | 28.8° | 21.3° |
C23 | O13 | C18 | C24 | 15.9° | 24.4° |
C23 | O13 | C18 | C16 | 138.6° | 143.4° |
C23 | O13 | C18 | H13 | 101.4° | 94.5° |
O13 | C23 | H15 | H16 | 121.3° | 121.0° |
O13 | C23 | C25 | H17 | 90.1° | 96.8° |
O13 | C23 | C25 | H18 | 147.8° | 139.5° |
C25 | C24 | C18 | H7 | 119.2° | 117.9° |
C25 | C24 | C18 | H8 | 119.2° | 117.9° |
C25 | C24 | C18 | O13 | 2.8° | 36.5° |
C25 | C24 | C18 | C16 | 121.3° | 155.4° |
C25 | C24 | H7 | H8 | 122.2° | 124.2° |
C25 | C24 | C18 | H13 | 120.9° | 82.5° |
C24 | C25 | C23 | H15 | 90.7° | 98.2° |
C24 | C25 | C23 | H16 | 148.4° | 140.8° |
C24 | C25 | H17 | H18 | 123.1° | 123.6° |
C24 | C18 | O13 | C16 | 122.7° | 118.9° |
C24 | C18 | O13 | H13 | 117.3° | 118.9° |
C24 | C18 | C16 | H13 | 117.7° | 122.1° |
C24 | C18 | C16 | N11 | 69.2° | 180.0° |
C18 | C24 | H7 | H8 | 122.2° | 124.2° |
C24 | C18 | C16 | H11 | 171.1° | 60.0° |
C24 | C18 | C16 | H12 | 50.6° | 60.1° |
C18 | C24 | C25 | H17 | 100.3° | 84.1° |
C18 | C24 | C25 | H18 | 137.6° | 152.3° |
O13 | C18 | C16 | H13 | 120.7° | 122.1° |
O13 | C18 | C16 | N11 | 169.1° | 64.3° |
O13 | C18 | C24 | H7 | 122.0° | 154.4° |
O13 | C18 | C24 | H8 | 116.4° | 81.5° |
O13 | C18 | C16 | H11 | 49.4° | 175.7° |
O13 | C18 | C16 | H12 | 71.1° | 55.7° |
C18 | O13 | C23 | H15 | 91.2° | 121.2° |
C18 | O13 | C23 | H16 | 147.9° | 117.8° |
C18 | C16 | N11 | H11 | 119.7° | 120.0° |
C18 | C16 | N11 | H12 | 119.7° | 119.9° |
C18 | C16 | N11 | C9 | 138.0° | 180.0° |
C16 | C18 | C24 | H7 | 2.1° | 86.7° |
C16 | C18 | C24 | H8 | 119.4° | 37.4° |
C18 | C16 | N11 | H9 | 42.0° | 0.0° |
C18 | C16 | H11 | H12 | 120.8° | 120.0° |
C16 | N11 | C9 | H9 | 180.0° | 180.0° |
C16 | N11 | C9 | O12 | 5.9° | 0.0° |
C16 | N11 | C9 | C6 | 178.0° | 180.0° |
N11 | C16 | H11 | H12 | 120.9° | 120.0° |
N11 | C16 | C18 | H13 | 48.5° | 57.9° |
N11 | C9 | C6 | C7 | 8.0° | 180.0° |
N11 | C9 | O12 | C6 | 172.4° | 180.0° |
N11 | C9 | C6 | S5 | 179.3° | 0.0° |
C9 | N11 | C16 | H11 | 102.3° | 60.0° |
C9 | N11 | C16 | H12 | 18.3° | 60.0° |
C22 | C8 | C2 | C7 | 0.3° | 0.2° |
C22 | C8 | C2 | N4 | 179.2° | 179.5° |
C22 | C8 | C2 | C1 | 179.4° | 179.8° |
C22 | C8 | N4 | N3 | 178.4° | 180.0° |
C8 | C22 | H4 | H5 | 120.0° | 120.1° |
C8 | C22 | H4 | H6 | 120.0° | 120.0° |
C8 | C22 | H5 | H6 | 120.0° | 120.0° |
C6 | C7 | C2 | H1 | 180.0° | 179.9° |
C7 | C6 | C9 | O12 | 164.4° | 0.0° |
C7 | C6 | C9 | S5 | 171.3° | 180.0° |
C6 | C7 | C2 | C8 | 177.8° | 180.0° |
C6 | C7 | C2 | C1 | 1.9° | 0.0° |
C7 | C6 | S5 | C1 | 1.8° | 0.0° |
C2 | C7 | C6 | C9 | 173.9° | 180.0° |
C2 | C7 | C6 | S5 | 2.4° | 0.1° |
C7 | C2 | C8 | C1 | 179.7° | 180.0° |
C7 | C2 | C8 | N4 | 179.0° | 179.7° |
C7 | C2 | C1 | S5 | 0.5° | 0.0° |
C7 | C2 | C1 | N3 | 179.4° | 180.0° |
O12 | C9 | C6 | S5 | 6.9° | 180.0° |
O12 | C9 | N11 | H9 | 174.1° | 180.0° |
C9 | C6 | S5 | C1 | 174.1° | 180.0° |
C9 | C6 | C7 | H1 | 6.1° | 0.1° |
C6 | C9 | N11 | H9 | 2.0° | 0.0° |
C6 | S5 | C1 | C2 | 0.6° | 0.0° |
C6 | S5 | C1 | N3 | 177.7° | 180.0° |
S5 | C6 | C7 | H1 | 177.6° | 180.0° |
C2 | C8 | N4 | N3 | 2.4° | 0.4° |
C8 | C2 | C1 | S5 | 179.2° | 180.0° |
C8 | C2 | C1 | N3 | 0.3° | 0.0° |
C8 | C2 | C7 | H1 | 2.2° | 0.0° |
C2 | C8 | C22 | H4 | 179.1° | 90.6° |
C2 | C8 | C22 | H5 | 59.1° | 29.4° |
C2 | C8 | C22 | H6 | 60.9° | 149.5° |
C1 | C2 | C8 | N4 | 1.4° | 0.3° |
C2 | C1 | N3 | N4 | 1.8° | 0.2° |
C2 | C1 | S5 | N3 | 178.3° | 180.0° |
C2 | C1 | N3 | C10 | 171.1° | 180.0° |
C1 | C2 | C7 | H1 | 178.1° | 180.0° |
C8 | N4 | N3 | C1 | 2.7° | 0.4° |
C8 | N4 | N3 | C10 | 170.0° | 179.8° |
N4 | C8 | C22 | H4 | 0.0° | 89.9° |
N4 | C8 | C22 | H5 | 120.0° | 150.0° |
N4 | C8 | C22 | H6 | 120.0° | 30.0° |
N4 | N3 | C1 | S5 | 179.8° | 179.7° |
N4 | N3 | C1 | C10 | 172.9° | 179.8° |
N4 | N3 | C10 | C15 | 175.5° | 35.3° |
N4 | N3 | C10 | C14 | 8.1° | 144.4° |
S5 | C1 | N3 | C10 | 7.3° | 0.0° |
C1 | N3 | C10 | C15 | 12.7° | 145.0° |
C1 | N3 | C10 | C14 | 163.7° | 35.3° |
N3 | C10 | C15 | C14 | 176.3° | 179.7° |
N3 | C10 | C15 | C19 | 179.4° | 180.0° |
N3 | C10 | C14 | C20 | 178.2° | 180.0° |
N3 | C10 | C15 | H2 | 0.6° | 0.0° |
N3 | C10 | C14 | H10 | 1.8° | 0.0° |
C10 | C15 | C19 | H2 | 180.0° | 180.0° |
C15 | C10 | C14 | C20 | 1.7° | 0.3° |
C10 | C15 | C19 | C17 | 3.1° | 0.0° |
C15 | C10 | C14 | H10 | 178.3° | 179.8° |
C10 | C15 | C19 | H14 | 176.9° | 180.0° |
C14 | C10 | C15 | C19 | 3.1° | 0.3° |
C10 | C14 | C20 | H10 | 180.0° | 179.9° |
C10 | C14 | C20 | C17 | 0.3° | 0.0° |
C14 | C10 | C15 | H2 | 176.9° | 179.7° |
C10 | C14 | C20 | H3 | 179.7° | 180.0° |
C15 | C19 | C17 | H14 | 180.0° | 179.9° |
C15 | C19 | C17 | C20 | 1.7° | 0.3° |
C15 | C19 | C17 | CL1 | 177.6° | 180.0° |
C14 | C20 | C17 | C19 | 0.3° | 0.3° |
C14 | C20 | C17 | H3 | 180.0° | 180.0° |
C14 | C20 | C17 | CL1 | 179.0° | 179.9° |
C19 | C17 | C20 | CL1 | 179.3° | 179.7° |
C17 | C19 | C15 | H2 | 177.0° | 180.0° |
C19 | C17 | C20 | H3 | 179.7° | 179.7° |
C17 | C20 | C14 | H10 | 179.7° | 180.0° |
C20 | C17 | C19 | H14 | 178.3° | 179.8° |
CL1 | C17 | C20 | H3 | 1.0° | 0.0° |
CL1 | C17 | C19 | H14 | 2.4° | 0.1° |
H2 | C15 | C19 | H14 | 3.1° | 0.0° |
H3 | C20 | C14 | H10 | 0.3° | 0.1° |
H4 | C22 | H5 | H6 | 119.9° | 119.9° |
H7 | C24 | C18 | H13 | 119.9° | 35.5° |
H7 | C24 | C25 | H17 | 19.0° | 33.9° |
H7 | C24 | C25 | H18 | 103.1° | 89.7° |
H8 | C24 | C18 | H13 | 1.6° | 159.6° |
H8 | C24 | C25 | H17 | 140.5° | 158.0° |
H8 | C24 | C25 | H18 | 18.4° | 34.3° |
H9 | N11 | C16 | H11 | 77.7° | 120.0° |
H9 | N11 | C16 | H12 | 161.7° | 120.0° |
H11 | C16 | C18 | H13 | 71.2° | 62.1° |
H12 | C16 | C18 | H13 | 168.2° | 177.8° |
H15 | C23 | C25 | H17 | 150.3° | 143.7° |
H15 | C23 | C25 | H18 | 28.2° | 20.0° |
H16 | C23 | C25 | H17 | 29.5° | 22.7° |
H16 | C23 | C25 | H18 | 92.6° | 101.0° |