Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5L2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.47Å
C1O5sing1.43Å1.41Å
C1SBNsing1.81Å1.84Å
C2C3sing1.53Å1.49Å
C2O2sing1.43Å1.48Å
C3C4sing1.53Å1.48Å
C3O3sing1.43Å1.44Å
C4C5sing1.53Å1.52Å
C4O4sing1.43Å1.39Å
C5C6sing1.53Å1.39Å
C5O5sing1.43Å1.48Å
C6O6sing1.45Å1.39Å
O6CAZsing1.34Å1.38Å
CAZOAGdoub1.21Å1.16Å
CAZCABsing1.51Å1.53Å
SBNOANdoub1.42Å1.54Å
SBNOAOdoub1.42Å1.54Å
SBNNsing1.66Å1.42Å
NCD1sing1.47Å1.19Å
NCAsing1.47Å1.47Å
CD1CGsing1.55Å1.64Å
CGOD2sing1.43Å1.53Å
CGCBsing1.55Å1.17Å
OD2SBMsing1.52Å1.69Å
SBMOALdoub1.42Å1.51Å
SBMOAMdoub1.42Å1.54Å
SBMNAFsing1.66Å1.60Å
CBCAsing1.54Å1.55Å
CACsing1.51Å1.50Å
COdoub1.21Å1.13Å
COASsing1.34Å1.37Å
OASCAAsing1.45Å1.38Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
CABH11sing1.09Å1.10Å
CABH12sing1.09Å1.10Å
CABH13sing1.09Å1.10Å
CD1H16sing1.09Å1.10Å
CGH17sing1.09Å1.10Å
NAFH18sing0.97Å1.00Å
NAFH19sing0.97Å1.00Å
CBH20sing1.09Å1.10Å
CBH21sing1.09Å1.10Å
CAH22sing1.09Å1.10Å
CAAH23sing1.09Å1.10Å
CAAH24sing1.09Å1.10Å
CAAH25sing1.09Å1.10Å
CD1H14sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O5116.7°109.4°
C2C1SBN107.2°109.5°
C1C2C3113.7°109.2°
C1C2O2112.1°109.5°
C2C1H1111.3°109.5°
C1C2H2105.2°109.5°
O5C1SBN101.3°109.5°
C1O5C5120.4°114.1°
O5C1H1112.4°109.5°
C1SBNOAN110.1°110.6°
C1SBNOAO100.5°110.5°
C1SBNN112.7°104.4°
SBNC1H1107.0°109.5°
C3C2O2114.6°109.5°
C2C3C4122.7°109.0°
C2C3O3120.7°109.5°
C3C2H2104.9°109.6°
C2C3H397.3°109.6°
O2C2H2105.1°109.5°
C2O2HO2109.5°114.0°
C4C3O3111.7°109.5°
C3C4C5113.3°109.2°
C3C4O4118.3°109.6°
C4C3H397.3°109.6°
C3C4H4100.4°109.5°
O3C3H397.5°109.6°
C3O3HO3109.5°114.0°
C5C4O4118.5°109.6°
C4C5C6117.7°109.5°
C4C5O5118.2°109.4°
C5C4H4100.1°109.5°
C4C5H596.7°109.5°
O4C4H4101.1°109.6°
C4O4HO4109.5°114.0°
C6C5O5119.6°109.5°
C5C6O6107.6°109.5°
C6C5H597.4°109.5°
C5C6H61110.0°109.5°
C5C6H62109.9°109.5°
O5C5H596.9°109.5°
C6O6CAZ116.8°117.0°
O6C6H61109.9°109.5°
O6C6H62109.9°109.4°
O6CAZOAG121.8°120.0°
O6CAZCAB114.7°120.0°
OAGCAZCAB123.4°120.0°
CAZCABH11109.5°109.5°
CAZCABH12109.5°109.5°
CAZCABH13109.5°109.5°
OANSBNOAO115.4°121.1°
OANSBNN109.2°104.3°
OAOSBNN108.7°104.3°
SBNNCD1121.4°125.6°
SBNNCA119.6°125.7°
CD1NCA107.2°108.7°
NCD1CG104.5°104.8°
NCD1H16110.7°110.4°
NCD1H14110.7°110.4°
NCACB102.3°107.3°
NCAC111.6°109.9°
NCAH22111.1°109.8°
CD1CGOD2109.4°110.9°
CD1CGCB101.9°101.6°
CGCD1H16110.7°110.4°
CD1CGH17106.7°111.0°
CGCD1H14110.7°110.3°
OD2CGCB116.5°111.0°
CGOD2SBM125.9°114.0°
OD2CGH17107.9°110.9°
CGCBCA105.7°103.0°
CBCGH17113.8°111.1°
CGCBH20110.4°110.8°
CGCBH21110.4°110.7°
OD2SBMOAL102.4°106.4°
OD2SBMOAM114.9°106.4°
OD2SBMNAF105.1°107.2°
OALSBMOAM114.4°123.2°
OALSBMNAF100.4°106.4°
OAMSBMNAF117.6°106.4°
SBMNAFH18109.5°120.0°
SBMNAFH19109.4°120.0°
CBCAC110.8°110.0°
CACBH20110.4°110.8°
CACBH21110.4°110.5°
CBCAH22110.1°109.8°
CACO119.4°120.0°
CACOAS116.8°120.0°
CCAH22110.7°110.0°
OCOAS123.7°120.0°
COASCAA119.5°117.0°
OASCAAH23109.5°109.5°
OASCAAH24109.5°109.4°
OASCAAH25109.5°109.5°
H61C6H62109.5°109.4°
H11CABH12109.5°109.4°
H11CABH13109.5°109.5°
H12CABH13109.5°109.5°
H16CD1H14109.4°110.4°
H18NAFH19109.5°119.9°
H20CBH21109.5°110.8°
H23CAAH24109.5°109.5°
H23CAAH25109.5°109.5°
H24CAAH25109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O5SBN115.9°120.0°
C2C1O5H1130.3°120.0°
C2C1SBNH1119.4°120.0°
C1C2C3O2130.8°119.9°
C1C2C3H2114.4°119.9°
C1C2O2H2113.7°120.1°
C1C2C3C417.6°57.0°
C1C2C3O3135.5°176.8°
C2C1O5C532.4°61.2°
C2C1SBNOAN37.5°166.9°
C2C1SBNOAO84.7°56.4°
C2C1SBNN159.7°55.2°
C1C2C3H3121.2°62.9°
C1C2O2HO2180.0°180.0°
O5C1SBNH1117.8°120.1°
O5C1C2C341.3°57.6°
O5C1C2O2173.3°62.3°
C1O5C5C41.8°61.2°
C1O5C5C6157.6°178.9°
O5C1SBNOAN85.2°73.2°
O5C1SBNOAO152.5°63.6°
O5C1SBNN37.0°175.2°
O5C1C2H273.0°177.6°
C1O5C5H599.7°58.8°
SBNC1C2C3153.9°62.4°
SBNC1C2O274.1°177.7°
SBNC1O5C5148.3°58.8°
C1SBNOANOAO112.9°131.5°
C1SBNOANN124.3°111.7°
C1SBNOAON118.5°111.7°
C1SBNNCD184.4°82.4°
C1SBNNCA53.8°98.0°
SBNC1C2H239.6°57.6°
C3C2O2H2114.7°120.2°
C2C3C4O3155.2°119.8°
C2C3C4H3103.6°119.9°
C2C3O3H3103.2°120.2°
C2C3C4C514.0°57.0°
C2C3C4O4131.4°62.9°
C3C2C1H189.5°177.6°
C2C3C4H4119.8°176.9°
C3C2O2HO248.4°60.3°
C2C3O3HO3180.0°180.0°
O2C2C3C4148.5°62.9°
O2C2C3O34.6°56.9°
O2C2C1H142.5°57.7°
O2C2C3H3107.9°177.2°
C4C3O3H3101.0°120.2°
C3C4C5O4145.3°120.0°
C3C4C5H4106.1°119.9°
C3C4O4H4108.4°120.2°
C3C4C5C6179.6°177.6°
C3C4C5O524.1°57.7°
C4C3C2H296.8°176.9°
C3C4C5H577.5°62.3°
C4C3O3HO324.2°60.4°
C3C4O4HO4180.0°60.0°
O3C3C4C5169.2°176.9°
O3C3C4O423.8°56.9°
O3C3C2H2110.2°63.2°
O3C3C4H484.9°63.3°
C5C4O4H4108.0°120.1°
C4C5C6O5156.0°119.9°
C4C5C6H5101.7°120.1°
C4C5O5H5101.5°120.0°
C4C5C6O6163.4°175.2°
C5C4C3H389.6°62.9°
C4C5C6H6143.7°64.7°
C4C5C6H6276.9°55.2°
C5C4O4HO436.4°179.7°
O4C4C5C635.1°57.6°
O4C4C5O5121.2°62.3°
O4C4C3H3125.0°177.2°
O4C4C5H5137.2°177.7°
C6C5O5H5102.6°120.1°
C5C6O6H61119.7°120.1°
C5C6O6H62119.7°120.0°
C5C6O6CAZ146.7°175.1°
C6C5C4H473.5°62.6°
C5C6H61H62120.9°120.0°
O5C5C6O67.4°64.9°
C5O5C1H197.9°178.8°
O5C5C4H4130.2°177.5°
O5C5C6H61112.3°55.1°
O5C5C6H62127.2°175.1°
C6O6CAZOAG22.0°5.0°
C6O6CAZCAB157.0°174.9°
O6C6C5H594.9°55.1°
O6C6H61H62120.8°119.9°
O6CAZOAGCAB178.9°179.9°
CAZO6C6H6126.9°64.8°
CAZO6C6H6293.6°55.1°
O6CAZCABH11179.0°65.1°
O6CAZCABH1259.0°175.0°
O6CAZCABH1361.0°55.0°
OAGCAZCABH110.0°115.0°
OAGCAZCABH12120.0°4.9°
OAGCAZCABH13120.0°125.0°
CAZCABH11H12120.0°119.9°
CAZCABH11H13120.0°120.1°
CAZCABH12H13120.0°120.0°
OANSBNOAON123.1°116.8°
OANSBNNCD138.4°33.7°
OANSBNNCA176.6°146.0°
OANSBNC1H1156.9°46.9°
OAOSBNNCD1165.1°161.6°
OAOSBNNCA56.7°18.1°
OAOSBNC1H134.7°176.4°
SBNNCD1CA142.7°179.7°
SBNNCD1CG171.1°156.0°
SBNNCACB152.6°178.9°
SBNNCAC88.9°61.5°
NSBNC1H180.8°64.8°
SBNNCD1H1651.9°37.0°
SBNNCAH2235.2°59.6°
SBNNCD1H1469.7°85.3°
NCD1CGH16119.2°118.9°
NCD1CGH14119.2°118.8°
NCD1CGOD2169.7°81.1°
NCD1CGCB45.8°37.0°
CD1NCACB9.2°1.4°
CD1NCAC127.6°118.2°
NCD1H16H14122.3°122.3°
NCD1CGH1773.8°155.1°
CD1NCAH22108.3°120.7°
CANCD1CG28.5°24.3°
NCACBCG22.8°21.8°
NCACBC119.1°119.5°
NCACBH22118.2°119.3°
NCACH22124.3°121.0°
NCACO55.4°0.1°
NCACOAS121.5°180.0°
CANCD1H1690.8°143.2°
NCACBH2096.6°140.3°
NCACBH21142.2°96.5°
CANCD1H14147.7°94.4°
CD1CGOD2CB114.8°112.2°
CD1CGOD2H17115.7°123.9°
CD1CGCBH17114.5°118.1°
CD1CGOD2SBM118.8°95.5°
CD1CGCBCA36.5°35.3°
CGCD1H16H14122.3°122.2°
CD1CGCBH2082.9°153.8°
CD1CGCBH21155.9°82.9°
OD2CGCBH17126.5°123.8°
CGOD2SBMOAL80.0°174.4°
CGOD2SBMOAM44.6°41.4°
CGOD2SBMNAF175.4°72.1°
OD2CGCBCA155.5°82.8°
OD2CGCD1H1650.5°37.8°
OD2CGCBH2036.1°35.7°
OD2CGCBH2185.1°159.1°
OD2CGCD1H1471.1°160.1°
CBCGOD2SBM126.3°152.3°
CGCBCAH20119.4°118.5°
CGCBCAH21119.4°118.3°
CGCBCAC96.3°141.3°
CBCGCD1H1673.4°155.9°
CGCBH20H21121.7°123.3°
CGCBCAH22141.0°97.5°
CBCGCD1H14165.0°81.8°
OD2SBMOALOAM125.0°123.0°
OD2SBMOALNAF108.1°114.1°
OD2SBMOAMNAF124.5°114.1°
SBMOD2CGH173.1°28.3°
OD2SBMNAFH18180.0°150.0°
OD2SBMNAFH1960.0°30.0°
OALSBMOAMNAF117.5°122.9°
OALSBMNAFH1874.0°36.4°
OALSBMNAFH19166.0°143.5°
OAMSBMNAFH1850.7°96.5°
OAMSBMNAFH1969.3°83.6°
SBMNAFH18H19120.0°179.9°
CBCACH22122.4°121.1°
CBCACO57.9°117.9°
CBCACOAS125.2°62.1°
CACBCGH1778.0°153.4°
CACBH20H21121.8°123.0°
CACOOAS176.6°179.9°
CACOASCAA170.6°179.9°
CCACBH20144.3°100.2°
CCACBH2123.1°23.0°
OCOASCAA6.1°0.0°
OCCAH22179.7°121.1°
OASCCAH222.8°59.0°
COASCAAH23180.0°60.0°
COASCAAH2460.0°60.0°
COASCAAH2560.0°180.0°
OASCAAH23H24120.0°120.0°
OASCAAH23H25120.0°120.0°
OASCAAH24H25120.0°120.0°
H1C1C2H2156.2°62.4°
H2C2C3H36.8°57.0°
H2C2O2HO266.2°59.9°
H3C3C4H416.2°57.0°
H3C3O3HO376.9°59.8°
H4C4C5H528.6°57.5°
H4C4O4HO471.6°60.2°
H5C5C6H61145.4°175.2°
H5C5C6H6224.8°64.8°
H11CABH12H13120.0°120.0°
H16CD1CGH17167.0°85.9°
H17CGCBH20162.6°88.1°
H17CGCBH2141.5°35.3°
H17CGCD1H1445.4°36.3°
H20CBCAH2221.6°21.0°
H21CBCAH2299.6°144.2°
H23CAAH24H25120.0°120.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon